Because there are thousands of peach cultivars,cultivar classification is a critical step before starting a breeding project.Various molecular markers such as simple sequence repeats(SSRs)can be used.In this study,67 ...Because there are thousands of peach cultivars,cultivar classification is a critical step before starting a breeding project.Various molecular markers such as simple sequence repeats(SSRs)can be used.In this study,67 polymorphic primers produced 302 bands.Higher values for SI index(1.903)suggested higher genetic variability in the genotype under investigation.Mean values for observed alleles(Na),expected heterozygosity(He),effective alleles(Ne),Nei’s information index(h),and polymorphic information content(PIC)were 4.5,0.83,5.45,0.83,and 0.81,respectively.The dendrogram constructed based on Jaccard’s similarity coefficients outlined four distinct clusters in the entire germplasm.In addition,an analysis of molecular variance(AMOVA)showed that70.68%of the total variation was due to within-population variation,while 29.32%was due to variation among populations.According to this research,all primers were successfully used for the peach accessions.The EST-SSR markers should be useful in peach breeding programs and other research.展开更多
The objective of this study was to compare the soil seed bank in an area under natural regeneration(F1)and another reforested through seedling planting(F2),seven years after bauxite mining,in Southeast,Brazil.In each ...The objective of this study was to compare the soil seed bank in an area under natural regeneration(F1)and another reforested through seedling planting(F2),seven years after bauxite mining,in Southeast,Brazil.In each area,10 sampling points were randomly distributed,using three samples of topsoil to represent each point.The samples were transported to a shade house and evaluated for six months,where emerging individuals were identified every two weeks.Floristic similarity was evaluated with cluster analysis based on the Jaccard index(SJ).Species richness and abundance of individuals were compared using Student's t test.In F1,2,114.94 propagules m-2 were registered,belonging to 51 species and 24 botanical families,Shannon-Wiener diversity index H’=2.770 and Pielou evenness index J’=0.705.In F2,1,168.62 propagules m-2 were registered,belonging to 42 species and 22 families,H’=2.618 and J’=0.700.The(SJ)between F1 and F2 was 0.61,indicating a high similarity.The results showed high density of propagules,good diversity and absence of ecological dominance.The high number of individuals and diversity of tree species with zoochoric dispersion found in the areas indicates that both natural regeneration and reforestation were efficient in the ecological restoration of bauxite mined areas.展开更多
Genetic diversity among 5029 accessions representing a proposed Chinese wheat core collection was analyzed using 78 pairs of fluorescent microsatellite (SSR) primers mapped to 21 chromosomes. A stepwise hierarchical s...Genetic diversity among 5029 accessions representing a proposed Chinese wheat core collection was analyzed using 78 pairs of fluorescent microsatellite (SSR) primers mapped to 21 chromosomes. A stepwise hierarchical sampling strategy with priority based on 4×105 SSR data-points was used to construct a core collection from the 23090 initial collections. The core collection consisted of 1160 accessions, including 762 landraces, 348 modern varieties and 50 introduced varieties. The core ac-counts for 23.1% of the 5029 candidate core accessions and 5% of the 23090 initial collections, but retains 94.9% of alleles from the candidate collections and captures 91.5% of the genetic variation in the initial collections. These data indicate that it is possible to maintain genetic diversity in a core collection while retaining fewer accessions than the accepted standard, i.e., 10% of the initial collections captured more than 70% of their genetic diversity. Estimated genetic representation of the core con-structed by preferred sampling (91.5%) is much higher than that by random sampling (79.8%). Both mean genetic richness and genetic diversity indices of the landraces were higher than those of the modern varieties in the core. Structure and principal coordinate analysis revealed that the landraces and the modern varieties were two relatively independent subpopulations. Strong genetic differentiation associated with ecological environments has occurred in the landraces, but was relatively weak in the modern cultivars. In addition, a mini-core collection was constructed, which consisted of 231 accessions with an estimated 70% representation of the genetic variation from the initial collections. The mini-core has been distributed to various research and breeding institutes for detailed phenotyping and breeding of genetic introgression lines.展开更多
基金The work was supported by Payme-Noor University of Tehran,Iran and Shahid Chamran University of Ahvaz(AG1396-Grant_Faculty of Agriculture).
文摘Because there are thousands of peach cultivars,cultivar classification is a critical step before starting a breeding project.Various molecular markers such as simple sequence repeats(SSRs)can be used.In this study,67 polymorphic primers produced 302 bands.Higher values for SI index(1.903)suggested higher genetic variability in the genotype under investigation.Mean values for observed alleles(Na),expected heterozygosity(He),effective alleles(Ne),Nei’s information index(h),and polymorphic information content(PIC)were 4.5,0.83,5.45,0.83,and 0.81,respectively.The dendrogram constructed based on Jaccard’s similarity coefficients outlined four distinct clusters in the entire germplasm.In addition,an analysis of molecular variance(AMOVA)showed that70.68%of the total variation was due to within-population variation,while 29.32%was due to variation among populations.According to this research,all primers were successfully used for the peach accessions.The EST-SSR markers should be useful in peach breeding programs and other research.
基金To the CNPq,Fapemig and Capes by research fellowships for the authors and to the Companhia Brasileira de Alumínio for provided infrastructure and financial support for the project.
文摘The objective of this study was to compare the soil seed bank in an area under natural regeneration(F1)and another reforested through seedling planting(F2),seven years after bauxite mining,in Southeast,Brazil.In each area,10 sampling points were randomly distributed,using three samples of topsoil to represent each point.The samples were transported to a shade house and evaluated for six months,where emerging individuals were identified every two weeks.Floristic similarity was evaluated with cluster analysis based on the Jaccard index(SJ).Species richness and abundance of individuals were compared using Student's t test.In F1,2,114.94 propagules m-2 were registered,belonging to 51 species and 24 botanical families,Shannon-Wiener diversity index H’=2.770 and Pielou evenness index J’=0.705.In F2,1,168.62 propagules m-2 were registered,belonging to 42 species and 22 families,H’=2.618 and J’=0.700.The(SJ)between F1 and F2 was 0.61,indicating a high similarity.The results showed high density of propagules,good diversity and absence of ecological dominance.The high number of individuals and diversity of tree species with zoochoric dispersion found in the areas indicates that both natural regeneration and reforestation were efficient in the ecological restoration of bauxite mined areas.
基金the National Basic Research Program of China (Grant Nos. G19980202 and 2004CB117202)
文摘Genetic diversity among 5029 accessions representing a proposed Chinese wheat core collection was analyzed using 78 pairs of fluorescent microsatellite (SSR) primers mapped to 21 chromosomes. A stepwise hierarchical sampling strategy with priority based on 4×105 SSR data-points was used to construct a core collection from the 23090 initial collections. The core collection consisted of 1160 accessions, including 762 landraces, 348 modern varieties and 50 introduced varieties. The core ac-counts for 23.1% of the 5029 candidate core accessions and 5% of the 23090 initial collections, but retains 94.9% of alleles from the candidate collections and captures 91.5% of the genetic variation in the initial collections. These data indicate that it is possible to maintain genetic diversity in a core collection while retaining fewer accessions than the accepted standard, i.e., 10% of the initial collections captured more than 70% of their genetic diversity. Estimated genetic representation of the core con-structed by preferred sampling (91.5%) is much higher than that by random sampling (79.8%). Both mean genetic richness and genetic diversity indices of the landraces were higher than those of the modern varieties in the core. Structure and principal coordinate analysis revealed that the landraces and the modern varieties were two relatively independent subpopulations. Strong genetic differentiation associated with ecological environments has occurred in the landraces, but was relatively weak in the modern cultivars. In addition, a mini-core collection was constructed, which consisted of 231 accessions with an estimated 70% representation of the genetic variation from the initial collections. The mini-core has been distributed to various research and breeding institutes for detailed phenotyping and breeding of genetic introgression lines.
