Direct-fed microbials(DFM) are considered as a promising technique to improve animal productivity without affecting animal health or harming the environment.The potential of three bacterial DFM to reduce methane(CH4)e...Direct-fed microbials(DFM) are considered as a promising technique to improve animal productivity without affecting animal health or harming the environment.The potential of three bacterial DFM to reduce methane(CH4)emissions,modulate ruminal fermentation,milk production and composition of primiparous dairy cows was examined in this study.As previous reports have shown that DFM respond differently to different diets,two contrasting diets were used in this study.Eight lactating primiparous cows were randomly divided into two groups that were fed a corn silage-based,high-starch diet(HSD) or a grass silage-based,high-fiber diet(HFD).Cows in each dietary group were randomly assigned to four treatments in a 4 × 4 Latin square design.The bacterial DFM used were selected for their proven CH4-reducing effect in vitro.Treatments included control(without DFM) and 3 DFM treatments: Propionibacterium freudenreichii 53-W(2.9 × 10^10 colony forming units(CFU)/cow per day),Lactobacillus pentosus D31(3.6 × 10^11 CFU/cow per day) and Lactobacillus bulgaricus D1(4.6 × 10^10 CFU/cow per day).Each experimental period included 4 weeks of treatment and 1 week of wash-out,with measures performed in the fourth week of the treatment period.Enteric CH4 emissions were measured during 3 consecutive days using respiration chambers.Rumen samples were collected for ruminal fermentation parameters and quantitative microbial analyses.Milk samples were collected for composition analysis.Body weight of cows were recorded at the end of each treatment period.Irrespective of diet,no mitigating effect of DFM was observed on CH4 emissions in dairy cows.In contrast,Propionibacterium increased CH4 intensity by 27%(g CH4/kg milk) in cows fed HSD.There was no effect of DFM on other fermentation parameters and on bacterial,archaeal and protozoal numbers.Similarly,the effect of DFM on milk fatty acid composition was negligible.Propionibacterium and L.pentosus DFM tended to increase body weight gain with HSD.We conclude that,contrary to the effect previously observed in vitro,bacterial DFM Propionibacterium freudenreichii 53-W,Lactobacillus pentosus D31 and Lactobacillus bulgaricus D1 did not alter ruminal fermentation and failed to reduce CH4 emissions in lactating primiparous cows fed high-starch or high-fiber diets.展开更多
Direct-fed microbials(DFMs)are feed additives containing live naturally existing microbes that can benefit animals’health and production performance.Due to the banned or strictly limited prophylactic and growth promo...Direct-fed microbials(DFMs)are feed additives containing live naturally existing microbes that can benefit animals’health and production performance.Due to the banned or strictly limited prophylactic and growth promoting usage of antibiotics,DFMs have been considered as one of antimicrobial alternatives in livestock industry.Microorganisms used as DFMs for ruminants usually consist of bacteria including lactic acid producing bacteria,lactic acid utilizing bacteria and other bacterial groups,and fungi containing Saccharomyces and Aspergillus.To date,the available DFMs for ruminants have been largely based on their effects on improving the feed efficiency and ruminant productivity through enhancing the rumen function such as stabilizing ruminal pH,promoting ruminal fermentation and feed digestion.Recent research has shown emerging evidence that the DFMs may improve performance and health in young ruminants,however,these positive outcomes were not consistent among studies and the modes of action have not been clearly defined.This review summarizes the DFM studies conducted in ruminants in the last decade,aiming to provide the new knowledge on DFM supplementation strategies for various ruminant production stages,and to identify what are the potential barriers and challenges for current ruminant industry to adopt the DFMs.Overall literature research indicates that DFMs have the potential to mitigate ruminal acidosis,improve immune response and gut health,increase productivity(growth and milk production),and reduce methane emissions or fecal shedding of pathogens.More research is needed to explore the mode of action of specific DFMs in the gut of ruminants,and the optimal supplementation strategies to promote the development and efficiency of DFM products for ruminants.展开更多
Direct-fed microbials（DFM）, generally regarded as safe status, are successfully used in improving rumen ecology, gastro-intestinal health, feed efficiency, milk production and growth rate in ruminants. On the other ...Direct-fed microbials（DFM）, generally regarded as safe status, are successfully used in improving rumen ecology, gastro-intestinal health, feed efficiency, milk production and growth rate in ruminants. On the other hand, methanogenesis in rumen, which accounts for a significant loss of ruminant energy and increased greenhouse gas in environment, is of great concern, therefore, use of DFM for improving productivity without compromising the animal health and ecological sustainability is encouraged. The present study was conducted to investigate the methane reducing potential of bacteriocinogenic strain Pediococcus pentosaceus-34. Since, the culture showed no hemolysis on blood agar and DNase activity, hence, it was considered to be avirulent in nature, a prerequisite for any DFM. The culture also showed tolerance to pH 5.0 for 24 h with 0.5% organic acid mixture, whereas when given a shock for 2 h at different p H and organic acids concentrations, it showed growth at pH 3.0 and 4.0 with 0.1 and 1.0% organic acids, respectively, as having good animal probiotics attributes. The total gas production was significantly（P〈0.05） higher in live pedicoccal culture（LPC） and dead pedicoccal culture（DPC） both with wheat straw, when compared to the control. In sugarcane bagasse, gas production was significantly lower（P〈0.05） with LPC compared to the control and DPC both. Methane was reduced by the inclusion of LPC in sugarcane bagasse（0.07 mL CH4 mg–1 dry matter digestibility） with no effect on other rumen fermentation parameters. However, with wheat straw and LPC total gas, in vitro dry matter digestibility, total volatile fatty acids increased significantly but no reduction in methane production was observed in comparison to the control. Therefore, further research is warranted in this direction, if the bacteriocinogenic strains can be used as DFM for ruminants to improve the ruminant productivity.展开更多
Objective: To evaluate the ability of Bacillus spp. as direct-fed microbials(DFM) to biodegrade al atoxin B1(AFB1) by using an in vitro digestive model simulating in vivo conditions.Methods: Sixty-nine Bacillus isolat...Objective: To evaluate the ability of Bacillus spp. as direct-fed microbials(DFM) to biodegrade al atoxin B1(AFB1) by using an in vitro digestive model simulating in vivo conditions.Methods: Sixty-nine Bacillus isolates were obtained from intestines, and soil samples were screened by using a selective media method against 0.25 and 1.00 μg/m L of AFB1 in modii ed Czapek-Dox medium. Plates were incubated at 37 °C and observed every two days for two weeks. Physiological properties of the three Bacillus spp. candidates were characterized biochemically and by 16 S r RNA sequence analyzes for identii cation. Tolerance to acidic p H, osmotic concentrations of Na Cl, bile salts were tested, and antimicrobial sensitivity proi les were also determined. Bacillus candidates were individually sporulated by using a solid fermentation method and combined. Spores were incorporated into 1 of 3 experimental feed groups: 1) Negative control group, with unmedicated starter broiler feed without AFB1; 2) Positive control group, with negative control feed contaminated with 0.01% AFB1; 3) DFM treated group, with positive control feed supplemented with 109 spores/g. After digestion time(3:15 h), supernatants and digesta were collected for high-performance liquid chromatography l uorescence detection analysis by triplicate.Results: Three out of those sixty-nine DFM candidates showed ability to biodegrade AFB1 in vitro based on growth as well as reduction of l uorescence and area of clearance around each colony in modii ed Czapek-Dox medium which was clearly visible under day light after 48 h of evaluation. Analysis of 16S-DNA identii ed the strains as Bacillus amyloliquefaciens, Bacillus megaterium and Bacillus subtilis. The three Bacillus strains were tolerant to acidic conditions(p H 2.0), tolerant to a high osmotic pressure(Na Cl at 6.5%), and were able to tolerate 0.037% bile salts after 24 h of incubation. No signii cant dif erences(P > 0.05) were observed in the concentrations of AFB1 in neither the supernatants nor digesta samples evaluated by highperformance liquid chromatography with l uorescence detection between positive control or DFM treated groups. Conclusions: In vitro digestion time was not enough to confirm biodegradation of AFB1. Further studies to evaluate the possible biodegradation ef ects of the BacillusDFM when continuously administered in experimentally contaminated feed with AFB1, are in progress.展开更多
Three experiments were conducted to evaluate direct-fed microbial (<strong>DFM</strong>) supplementation on live performance, carcass characteristics, and fecal shedding of <em>E. coli</em> in ...Three experiments were conducted to evaluate direct-fed microbial (<strong>DFM</strong>) supplementation on live performance, carcass characteristics, and fecal shedding of <em>E. coli</em> in feedlot steers. In Exp. 1, 400 steers (BW = 348 kg) were assigned to treatments: <strong>CON</strong> = lactose carrier only, <strong>BOV</strong> =<em> P. freudenreichii </em>(NP24) +<em> L. acidophilus</em> (NP51), <strong>BOVD</strong> = <em>P. freudenreichii</em> (NP24) +<em> L. acidophilus</em> (NP51), and <strong>COMB</strong> = BOV fed for the first 101 d on feed, followed by BOVD for the final 28 d prior to harvest. In Exp. 2 (n = 1800;BW = 354 kg) and Exp. 3 (n = 112;BW = 397 kg), steers were utilized in a randomized complete block design and assigned to DFM treatments using low dose and high dose, respectively. Fecal samples were collected prior to harvest and analyzed for <em>E. coli</em> serogroups. In Exp. 1, DFM reduced (P < 0.01) the concentration of<em> E. coli</em> O157. Prevalence of O157 was reduced by BOVD supplementation in Exp. 2 and 3 (P < 0.01 and P = 0.08, respectively), and concentration of <em>E. coli</em> O157 in positive samples was reduced in both experiments where enumeration was performed (P ≤ 0.02). Weighted mean differences across the three experiments were equal to a 33% reduction in the prevalence of E. coli O157:H7 in BOVD treated cattle. A significant reduction in prevalence of O26, O45, O103, and O121 was observed in Exp. 2 (P ≤ 0.03). These results indicate that high levels of <em>L. acidophilus</em> (NP51) may represent an effective pre-harvest food safety intervention to reduce fecal shedding of several <em>E. coli</em> serogroups.展开更多
Manipulating the gastrointestinal microbial ecosystem to enhance animal performance and reproductive responses has been one of the main goals of animal science researchers and veterinarians.Recent restrictions to the ...Manipulating the gastrointestinal microbial ecosystem to enhance animal performance and reproductive responses has been one of the main goals of animal science researchers and veterinarians.Recent restrictions to the use of antimicrobials as growth promoters led researchers to seek alternative practices that can show promise both from the standpoint of efficacy as well as from the practical and economic aspects.One of the alternatives that surfaced as very promising in the last few decades is the use of direct-fed microbials （DFM） as a means to modulate the effects of the gastrointestinal microbiome on the host immune status, health and productivity.展开更多
The gut microbiota:The human body is colonized by a diverse and complex microbial community–including bacteria,viruses,archaea,and unicellular eukaryotes–that plays a central role in human wellbeing.Indeed,microbiot...The gut microbiota:The human body is colonized by a diverse and complex microbial community–including bacteria,viruses,archaea,and unicellular eukaryotes–that plays a central role in human wellbeing.Indeed,microbiota is crucial for several functions,including host metabolism,physiology,maintenance of the intestinal epithelial integrity,nutrition,and immune function,earning it the designation of a“vital organ”(Guinane and Cotter,2013).展开更多
Background The enteric methane inhibitor 3-nitrooxypropanol(3-NOP)inhibits the key enzyme in ruminal methanogenesis,but whether short-term(ST)and long-term(LT)dietary supplementation has similar effects on rumen micro...Background The enteric methane inhibitor 3-nitrooxypropanol(3-NOP)inhibits the key enzyme in ruminal methanogenesis,but whether short-term(ST)and long-term(LT)dietary supplementation has similar effects on rumen microbiota in beef cattle and how microbes change after 3-NOP withdrawal have not been studied.This study investigated changes in rumen bacteria,archaea,and protozoa after ST and LT dietary supplementation and removal of 3-NOP using metataxonomic analysis.Results A total of 143 rumen samples were collected from two beef cattle studies with 3-NOP supplementation.The ST study(95 samples)used eight ruminally cannulated beef cattle in a 4×4 Latin square design with four 28-d of 3-NOP treatments[mg/kg of dry matter(DM)]:control:0,low:53,med:161,and high:345.The LT study(48 samples)was a completely randomized design with two 3-NOP treatments[control:0,and high:280 mg/kg of DM)fed for 112-d followed by a 16-d withdrawal(without 3-NOP).Bacterial and archaeal communities were significantly affected by 3-NOP supplementation but limited effects on protozoal communities were observed.Under ST supplementation,the relative abundances of Prevotella,Methanobrevibacter(Mbb.)ruminantium,Methanosphaera sp.ISO3-F5,and Entodinium were increased(Q<0.05),whereas those of Mbb.gottschalkii and Epidinium were decreased(Q<0.05)with 3-NOP supplementation.In LT study,relative abundances of Mbb.ruminantium,and Methanosphaera sp.Group5 were increased(Q<0.05),while those of Saccharofermentans and Mbb.gottschalkii were decreased(Q<0.05)with 3-NOP supplementation.Comparison between 3-NOP supplementation and the withdrawal revealed increased relative abundances of Clostridia UCG-014 and Oscillospiraceae NK4A214 group and decreased those of Eubacterium nodatum group and Methanosphaera sp.Group5(P<0.05)after 3-NOP withdrawal.Further comparison of rumen microbiota between control and 3-NOP withdrawal showed significantly higher(P=0.029)relative abundances of Eggerthellaceae DNF00809,p-1088-a5 gut group,and Family XII UCG-001 in control group while no significant differences were detected for archaea and protozoa.Microbial network analysis revealed that microbial interactions differed by both 3-NOP dose and durations.Conclusions Both ST and LT supplementation affected overall rumen microbial profile,with individual microbial groups responded to 3-NOP supplementation differently.After 3-NOP withdrawal,not all microbes showed recovery,indicating that the 3-NOP driven shifts were only partially reversible.These findings provide an understanding of the effects of 3-NOP on rumen microbial communities and their adaptability to methane mitigation strategies.展开更多
Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a po...Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a potential role during this critical transitional period.However,its involvement in post-weaning diarrhea remains poorly understood.Here,we aim to elucidate the role and underlying mechanisms of Prevotella in alleviating diarrhea in weaned piglets.Results To model unsanitary housing conditions,piglets were housed in uncleaned pens containing residual fecal matter from previous occupants and exposed to cold stress by maintaining the ambient temperature at 19℃,below the optimal 28℃.Under these conditions,piglets were orally administered either a blank medium(CON,n=10×2)or Prevotella copri at 1×10^(8)CFU(Pc,n=10×2)on d 1,3,and 5.After 28 d,cold stress induced a diarrhea incidence of 33.45%in the CON group,while P.copri supplementation significantly reduced the diarrhea rate to 19.73%.Treatment with P.copri markedly improved intestinal morphology in the small intestine,decreased serum levels of lipopolysaccharide(LPS)and intestinal fatty acid-binding protein(i-FABP),and enhanced total antioxidant capacity(T-AOC)and catalase(CAT)activity.Quantitative PCR and 16S rRNA gene sequencing revealed that P.copri significantly increased the colonic abundance of Prevotella,reshaping both the composition and functional profile of the gut microbiota.Moreover,P.copri enhanced the modularity and robustness of microbial ecological networks.Untargeted metabolomic profiling of colonic contents revealed a significant enrichment of metabolites involved in the arachidonic acid pathway following P.copri supplementation.In parallel,untargeted metabolomics of P.copri culture supernatants identified differential metabolic pathways including metabolic pathways,biosynthesis of secondary metabolites,and biosynthesis of antibiotics.In vitro assays demonstrated that P.copri-derived metabolites inhibited the growth of three common porcine intestinal pathogens.Furthermore,both P.copri metabolites and arachidonic acid enhanced intestinal barrier integrity and suppressed TNF-α-induced inflammation and apoptosis in Caco-2 cells through activation of the AHR–Nrf2 signaling pathway.Conclusions These findings highlight the role of P.copri in maintaining gut homeostasis and provide new insights into microbiota-based interventions for early-life intestinal disorders.展开更多
Recently,Prevotella spp.,a major genus of gram-negative commensal bacteria in humans,have emerged as a key microbial contributor to host metabolism due to its ability to ferment dietary fibers,produce beneficial short...Recently,Prevotella spp.,a major genus of gram-negative commensal bacteria in humans,have emerged as a key microbial contributor to host metabolism due to its ability to ferment dietary fibers,produce beneficial short-chain fatty acids,and influence immune responses.However,their diversity and functional differences have created challenges for their development and therapeutic use.Recent studies have shown that specific Prevotella species,such as P.copri,P.intestinalis,and P.histicola,can strengthen gut barrier integrity and reduce metabolic imbalances.Notably,Prevotella populations can be increased through high-fiber or herbal-based treatments.Traditional herbal medicines,including fiber-rich decoctions,also demonstrate the potential to boost endogenous Prevotella communities,enhance microbial fermentation,and improve glucose and lipid balance.This perspective examines the context-dependent roles of Prevotella spp.,with emphasis on the functional heterogeneity of key species such as P.copri,suggests a framework for combining herbal modulation with species-level microbiota profiling,and outlines a research plan to explore microbe-herb synergy in treating obesity,type 2 diabetes,and related metabolic disorders.This strategy offers a new,ecology-based approach to complement standard metabolic interventions.展开更多
This study establishes and validates a method for the precise quantification of aquatic microbial loads using microbial diversity absolute quantitative sequencing.By adding synthetic spike-in DNA to water samples from...This study establishes and validates a method for the precise quantification of aquatic microbial loads using microbial diversity absolute quantitative sequencing.By adding synthetic spike-in DNA to water samples from the Dahei River prior to DNA extraction and 16S rRNA gene sequencing,it generates standard curves to convert sequencing data into absolute microbial copy numbers.The method,which is proved highly accurate(R^(2)>0.99),reveals a clear contrast between the river sites:the upstream community has not only a significantly higher total microbial load but also a completely different makeup of species compared to the downstream site.This approach effectively overcomes the limitations of relative abundance analysis,providing a powerful tool for environmental monitoring,and proposes key steps for future standardization to ensure data comparability and integration.展开更多
Background:The Colorectal Cancer(CRC)pathogenesis and therapeutic efficacy are influenced by the gut microbiome,making it a promising biomarker for predicting treatment responses and adverse effects.This systematic re...Background:The Colorectal Cancer(CRC)pathogenesis and therapeutic efficacy are influenced by the gut microbiome,making it a promising biomarker for predicting treatment responses and adverse effects.This systematic review aims to outline the gut microbiome composition in individuals with CRC undergoing the same therapeutic regimen and evaluate interindividual microbiome profile variations to better understand how these differences may influence therapeutic outcomes.Methods:Key studies investigating the microbiome’s role in therapeutic approaches for CRC were searched in both PubMed and Cochrane databases on 12 and 22 March 2025,respectively.Eligible studies included free full-text English-language randomized clinical trials and human observational studies reporting on gut microbiome composition and treatment outcomes.RoB 2 and ROBINS-I were employed in the evaluation of bias for randomized trials and observational studies,respectively.Data extracted was narratively analyzed.Results:Six studies involving a total of 361 individuals were included.Therapeutic interventions,either standard treatments and/or those targeting the gut microbiome,generally increased probiotic taxa and reduced pro-carcinogenic bacteria.However,no consistent pattern of improved clinical outcomes was observed,suggesting that treatment mechanisms,the tumor’s nature,and individual characteristics play critical roles in microbiome modulation.Conclusion:The gut microbiome holds significant potential in clinical settings.Nonetheless,further research is needed to better understand its functional aspects and to consider the influence of treatment mechanisms,the tumor’s nature,and individual characteristics as modulators,in order to optimize clinical outcomes.展开更多
Objective Evidence suggests that depleted gut microbialα-diversity is associated with hypertension;however,whether metabolic markers affect this relationship remains unknown.We aimed to determine the potential metabo...Objective Evidence suggests that depleted gut microbialα-diversity is associated with hypertension;however,whether metabolic markers affect this relationship remains unknown.We aimed to determine the potential metabolites mediating the associations ofα-diversity with blood pressure(BP)and BP variability(BPV).Methods Metagenomics and plasma targeted metabolomics were conducted on 523 Chinese participants from the MetaSalt study.The 24-hour,daytime,and nighttime BP and BPV were calculated based on ambulatory BP measurements.Linear mixed models were used to characterize the relationships betweenα-diversity(Shannon and Chao1 index)and BP indices.Mediation analyses were performed to assess the contribution of metabolites to the observed associations.The influence of key metabolites on hypertension was further evaluated in a prospective cohort of 2,169 participants.Results Gut microbial richness(Chao1)was negatively associated with 24-hour systolic BP,daytime systolic BP,daytime diastolic BP,24-hour systolic BPV,and nighttime systolic BPV(P<0.05).Moreover,26 metabolites were strongly associated with richness(Bonferroni P<0.05).Among them,four key metabolites(imidazole propionate,2-hydroxy-3-methylbutyric acid,homovanillic acid,and hydrocinnamic acid)mediated the associations between richness and BP indices(proportions of mediating effects:14.1%–67.4%).These key metabolites were also associated with hypertension in the prospective cohort.For example,each 1-standard deviation unit increase in hydrocinnamic acid significantly reduced the risk of prevalent(OR[95%CI]=0.90[0.82,0.99];P=0.03)and incident hypertension(HR[95%CI]=0.83[0.71,0.96];P=0.01).Conclusion Our results suggest that gut microbial richness correlates with lower BP and BPV,and that certain metabolites mediate these associations.These findings provide novel insights into the pathogenesis and prevention of hypertension.展开更多
Microbial contamination and the resulting corrosion in aircraft fuel system pose a serious threat to flight safety.Revealing the corrosion behavior and mechanism of fuel-degrading microorganisms on tank materials is c...Microbial contamination and the resulting corrosion in aircraft fuel system pose a serious threat to flight safety.Revealing the corrosion behavior and mechanism of fuel-degrading microorganisms on tank materials is crucial for developing effective mitigation strategies.In this study,the corrosion mechanisms of two representative hydrocarbon-degrading bacteria,Alcanivorax dieselolei and Microbacterium oxydans,toward AA7075 aluminum alloy,were systematically investigated.A combination of biofilm characterization,electrochemical testing,and surface/corrosion product characterization was employed.Both strains markedly accelerated the corrosion of AA7075,as evidence by the progressive decrease in polarization resistance and the pronounced rightward shift of the potentiodynamic polarization curves.Moreover,the difference between the pitting potential(E_(pit))and the corrosion potential(E_(corr))(ΔE=E_(pit)‒E_(corr))decreased due to microbial activities,indicating a pronounced tendency toward accelerated pitting corrosion.Corrosion morphology analysis revealed that both microbes promoted localized pitting corrosion.Furthermore,analysis of aviation kerosene composition indicated that both bacteria accelerated the degradation of C8 and C9 alkanes.These findings highlight the multiple threats of microbial contamination,material degradation,and fuel quality deterioration in fuel systems and underscore the need for targeted protection strategies for marine aviation operations.展开更多
Background An imbalance in the rumen microbiota caused by high-concentrate diets(HCD)is a significant endogenous trigger of mastitis.However,the underlying mechanisms remain largely unknown.Microbial extracellular ves...Background An imbalance in the rumen microbiota caused by high-concentrate diets(HCD)is a significant endogenous trigger of mastitis.However,the underlying mechanisms remain largely unknown.Microbial extracellular vesicles(mEVs)are critical mediators of microbe-host communication.However,the role of mEVs in rumen microbiota-mediated mastitis has not yet been reported.In this study,we used an HCD-induced rumen microbiota dysbiosis model to investigate the role of mEVs-derived from rumen microbiota in the pathogenesis of mastitis.Results Our results indicate that HCD leads to mastitis and systemic inflammation.Meanwhile,HCD-fed goats exhibited substantial rumen microbiota dysbiosis and the disruption of the rumen barrier.Transplanting rumen microbiota from HCD goats into mice induced both mastitis and systemic inflammation in the recipients.Specifically,HCD increases the production of mEVs carrying microbial DNA,which can translocate across the compromised rumen barrier to the mammary gland,triggering a mammary inflammatory response via activation of the cGAS-STING-NF-κB/NLRP3 pathway.Furthermore,treating mice with mEVs isolated from the rumen fluid of HCD goats directly induced mastitis,whereas depletion of microbial DNA attenuated mEVs-induced mastitis.Conclusion Our findings suggest that HCD induces rumen microbiota dysbiosis and impairs rumen barrier function.This dysfunction leads to an increase in microbial DNA-containing mEVs,which subsequently leak into the mammary gland.Once there,these mEVs activate the cGAS-STING-NF-κB/NLRP3 signaling pathway,ultimately inducing mastitis.This study provides a new perspective on the“rumen microbiota-mammary gland axis”and enhances the understanding of the pathogenesis of mastitis.展开更多
Elevation patterns and assembly processes of soil microbial community structures are essential for understanding biogeo-chemical processes in mountain systems.Differences in soil properties caused by elevation gradien...Elevation patterns and assembly processes of soil microbial community structures are essential for understanding biogeo-chemical processes in mountain systems.Differences in soil properties caused by elevation gradients can regulate the spatial distribu-tion and network complexity of the community structure.To explore the variations in soil microbial community structures and their as-sembly mechanisms across different elevations of the Changbai Mountains,as well as their responses to environmental factors,we col-lected microbial samples along an elevational gradient(seven elevations containing four vegetation zones)on the western slope of the Changbai Mountains using the method of metagenomic sequencing.The results showed a significant difference(P<0.05)for the Chao1 index across different elevations,but no significant difference was observed for the Shannon and Simpson indices.With increasing elev-ation,the number of nodes and links in the microbial network gradually decreased.Acidobacteria were highly connected to many nodes.The microbial communities indicated a significant distance-decay relationship(P<0.001)and were affected more by stochastic pro-cesses along the elevation gradient.The results of the Structural Equation Model(SEM)showed that elevation had direct significant ef-fect on carbon(C,P<0.01),nitrogen(N,P<0.01),and phosphorus(P,P<0.05)and weak negative effect on their ecological stoi-chiometry.Elevation was one of the major variables contributing to microbial network topology.The contribution of C and N to micro-bial network complexity was higher than that of P.Our study provides valuable insights into the responses of soil microbial communit-ies to elevation variations.展开更多
Microbially induced calcium carbonate precipitation(MICP)is an eco-friendly technology for soil improvement.Although numerous experiments have been conducted to solidify sand foundations using MICP,the mechanisms by w...Microbially induced calcium carbonate precipitation(MICP)is an eco-friendly technology for soil improvement.Although numerous experiments have been conducted to solidify sand foundations using MICP,the mechanisms by which grain interfacial morphologies influencethe MICP process remain unclear.This study utilized 3D-printed flowcells with different boundary morphologies to investigate the effects of interfacial morphologies on the MICP process.CaCO_(3)precipitation characteristics were investigated through microscopic observation and image quantificationanalysis.The results indicate that low flowvelocities near the interface promote bacterial accumulation due to reduced hydrodynamic shear forces.Rough interfaces,compared to smooth ones,enhance bacterial adsorption owing to the larger regions of low flowvelocity,increased surface area,and the formation of local eddies,which promote greater CaCO_(3)precipitation.Compared to the regions away from the interface,a higher abundance of small CaCO_(3)crystals is observed near the interface because of the high urease activity from bacteria and the reduced shear-induced entrainment due to the low flowvelocity.Besides,larger crystals also preferentially precipitate in proximity to interfaces as the low flowvelocity enhances crystal growth according to the particle attachment theory.The presence of rough interfaces further reduces flowvelocities,leading to the precipitation of larger and more densely packed CaCO_(3)crystals.Therefore,rough interfaces promote the microbially induced calcium carbonate precipitation.This work is expected to enhance the understanding of microbially induced calcium carbonate precipitation characteristics on solid surfaces such as soil grains and contribute to the optimization of MICP applications.展开更多
The combined effects of macronutrients(Nitrogen,Phosphorus,and Potassium-N,P,K)and micronutrient fertilization on turmeric yield,soil enzymatic activity,microbial biomass,and nutrient dynamics remains poorly understoo...The combined effects of macronutrients(Nitrogen,Phosphorus,and Potassium-N,P,K)and micronutrient fertilization on turmeric yield,soil enzymatic activity,microbial biomass,and nutrient dynamics remains poorly understood,despite their significance for sustainable soil fertility management and optimizing crop productivity across diverse agroecosystems.To investigate,a net house experiment on sandy loam Haplic Chernozem was conducted to 03 fertilizer regimes,viz.N_(75)P_(50)K_(50)kg ha^(−1)(T-2),N_(12)5P_(100)K_(100)kg ha^(−1)(T-3),and N_(100)P_(75)K_(75)+B_(3)Zn_(6)Fe_(6)kg ha^(−1)(T-4).Furthermore,the influence of these treatments was systematically assessed on soil nutrient status(N,P,K),enzymatic activities(alkaline phosphomonoesterase,dehydrogenase,fluorescein diacetate hydrolysis),microbial biomass carbon(MBC)and soil organic carbon(SOC).Balanced fertilization significantly turmeric productivity and soil health.All three fertilizer treatments showed a clear yield increase compared to the unfertilized control.Compared to the control,N_(75)P_(50)K_(50)kg/ha T-2 increased rhizome number and biomass per plant by 44.7%and 16.3%,respectively,while N_(100)P_(75)K_(75)+B_(3)Zn_(6)Fe_(6)kg/ha T-4 further enhanced them by 86.6%and 27.7%.T-3 produced the most significant yield response by increasing the rhizome biomass by 38.0%and rhizome number per plant by 100%compared to the control.The nutrient availability was also substantially improved.T-2 enhanced the soil nitrogen contents by 83.3%with maximum N levels observed in T-3&T-4.Phosphorus increased by 61.5%in T-3 and 37.3%in T-4,while potassium was enhanced by 12.9%in T-3 relative to the control,respectively.Enzymatic activities were markedly enhanced as T-3 was recorded to improve alkaline phosphomonoesterase(APA),dehydrogenase(DHA)and fluorescein diacetate hydrolysis(FDA)by 50.6%,37.4%,and 43.4%,where T-4 increased by 32.2%,30.9%,and 35.9%,respectively compared to control.MBC and SOC also rose significantly,with SOC increased by 13.8%(T-2),41.6%(T-3),and 47.2%(T-3)relative to control.The result of this study demonstrates that the integrated macroµnutrient fertilization,particularly T-37 T-4 treatments,sustainably enhanced turmeric yield,soil nutrient availability,enzyme activity,microbial biomass,and organic carbon.These findings highlight the critical role of balanced nutrient management in sustaining soil fertility and crop productivity across agroecosystems.展开更多
The effects of yeast culture and directfed microbes on the growth performance of weaner lambs was examined. Thirty-two Hu lambs with inihtial weight of 22.20 （ ±0.75 ） kg were randomly assigned to one of four t...The effects of yeast culture and directfed microbes on the growth performance of weaner lambs was examined. Thirty-two Hu lambs with inihtial weight of 22.20 （ ±0.75 ） kg were randomly assigned to one of four treatments： basal diet without additive （control）, added with yeast culture at 15 g/head/d （YEC）, YEC plus Bacillus licheniformis preparation at 2. 3 g/head/d （YBL） or plus Clostridium butyricum preparation at 2. 3 g/head/d （YCB）. The feeding trial lasted 75 d with 15 d for adaptation. Feed intake was not influenced （P 〉0. 05） by treatment. Average daily gain of growing lambs was 102, 114, 90, and 89 g/d in control, YEC, YBL, and YCB, respectively, with no significant difference （P 〉 0.05） among treatments, but the carcass weight of YEC lambs was significantly higher （P 〈 0.05） than that of other treatments. Total volatile fatty acids and acetate to propionate ratio in the rumen were unaffected, although the butyric acid concentration was higher （ P 〈 0.05 ） in the ru men fluid of YCB lambs compared with YEC lambs and slightly higher （ P 〉 0. 05 ） than in controls and YBL lambs. Solid-associated fungi population relative to total rumen bacteria 16S ribosomal DNA was significantly lower （ P 〈 0. 05 ） in YBL lambs （3.55） compared with those on YCB （23.12）. There was little difference in blood glucose and plasma urea-N concentrations among the treatments. Blood concentrations of creatinine and globulin were significantly higher （P 〈0.05） in YBL lambs, compared with the control and YEC-fed animals, and no difference with YCB lambs. Total protein and triglycerides in blood were significantly （P 〈 0.05） higher in YBL lambs, compared with controls. These serum biochemical parameters suggest that treatment increased amounts of absorbable protein but not efficiency of protein utilization and in YBL and YCB lambs. The results indicated that yeast culture improve growth performance, while little advantage could be expected from combining yeast culture with either the B. licheniformis preparation or C. butyricum preparation. More research using lower doses of B. licheniformis prepara- tion or C. butyricum preparation in combination with yeast culture is warranted.展开更多
For many years, ruminant nutritionists and microbiologists have been interested in manipulating the microbial ecosystem of the rumen to improve production efficiency of different ruminant species. Removal and restrict...For many years, ruminant nutritionists and microbiologists have been interested in manipulating the microbial ecosystem of the rumen to improve production efficiency of different ruminant species. Removal and restriction of antibiotics subtherapeutic uses from ruminant diets has amplified interest in improving nutrient utilization and animal performance and search for more safe alternatives. Some bacterial and fungal microorganisms as a direct-fed microbial（DFM） can be the most suitable solutions. Microorganisms that are commonly used in DFM for ruminants may be classified mainly as lactic acid producing bacteria（LAB）, lactic acid utilizing bacteria（LUB）, or other microorganism＇s species like Lactobacillus, Bifidobacterium, Enterococcus, Streptococcus, Bacillus, Propionibacterium, Megasphaera elsdenii and Prevotellabryantii, in addition to some fungal species of yeast such as Saccharomyces and Aspergillus. A definitive mode of action for bacterial or fungal DFM has not been established; although a variety of mechanisms have been suggested. Bacterial DFM potentially moderate rumen conditions, and improve weight gain and feed efficiency. Fungal DFM may reduce harmful oxygen from the rumen, prevent excess lactate production, increase feed digestibility, and alter rumen fermentation patterns. DFM may also compete with and inhibit the growth of pathogens, immune system modulation, and modulate microbial balance in the gastrointestinal tract. Improved dry matter intake, milk yield, fat corrected milk yield and milk fat content were obtained with DFM administration. However, the response to DFM is not constant; depending on dosages, feeding times and frequencies, and strains of DFM. Nonetheless, recent studies have supported the positive effects of DFM on ruminant performance.展开更多
基金Funding for the study was from Danone Research,Palaiseau,France.MP and DM acknowledge support from METHLAB a FACCE ERA-GAS project in collaboration with the French National Research Agency(ANR)
文摘Direct-fed microbials(DFM) are considered as a promising technique to improve animal productivity without affecting animal health or harming the environment.The potential of three bacterial DFM to reduce methane(CH4)emissions,modulate ruminal fermentation,milk production and composition of primiparous dairy cows was examined in this study.As previous reports have shown that DFM respond differently to different diets,two contrasting diets were used in this study.Eight lactating primiparous cows were randomly divided into two groups that were fed a corn silage-based,high-starch diet(HSD) or a grass silage-based,high-fiber diet(HFD).Cows in each dietary group were randomly assigned to four treatments in a 4 × 4 Latin square design.The bacterial DFM used were selected for their proven CH4-reducing effect in vitro.Treatments included control(without DFM) and 3 DFM treatments: Propionibacterium freudenreichii 53-W(2.9 × 10^10 colony forming units(CFU)/cow per day),Lactobacillus pentosus D31(3.6 × 10^11 CFU/cow per day) and Lactobacillus bulgaricus D1(4.6 × 10^10 CFU/cow per day).Each experimental period included 4 weeks of treatment and 1 week of wash-out,with measures performed in the fourth week of the treatment period.Enteric CH4 emissions were measured during 3 consecutive days using respiration chambers.Rumen samples were collected for ruminal fermentation parameters and quantitative microbial analyses.Milk samples were collected for composition analysis.Body weight of cows were recorded at the end of each treatment period.Irrespective of diet,no mitigating effect of DFM was observed on CH4 emissions in dairy cows.In contrast,Propionibacterium increased CH4 intensity by 27%(g CH4/kg milk) in cows fed HSD.There was no effect of DFM on other fermentation parameters and on bacterial,archaeal and protozoal numbers.Similarly,the effect of DFM on milk fatty acid composition was negligible.Propionibacterium and L.pentosus DFM tended to increase body weight gain with HSD.We conclude that,contrary to the effect previously observed in vitro,bacterial DFM Propionibacterium freudenreichii 53-W,Lactobacillus pentosus D31 and Lactobacillus bulgaricus D1 did not alter ruminal fermentation and failed to reduce CH4 emissions in lactating primiparous cows fed high-starch or high-fiber diets.
基金The authors acknowledge funding support from Ministry of Alberta Agriculture Results Driven Agriculture Research(2018F097R and 2021F124R)NSERC Discovery Grant.
文摘Direct-fed microbials(DFMs)are feed additives containing live naturally existing microbes that can benefit animals’health and production performance.Due to the banned or strictly limited prophylactic and growth promoting usage of antibiotics,DFMs have been considered as one of antimicrobial alternatives in livestock industry.Microorganisms used as DFMs for ruminants usually consist of bacteria including lactic acid producing bacteria,lactic acid utilizing bacteria and other bacterial groups,and fungi containing Saccharomyces and Aspergillus.To date,the available DFMs for ruminants have been largely based on their effects on improving the feed efficiency and ruminant productivity through enhancing the rumen function such as stabilizing ruminal pH,promoting ruminal fermentation and feed digestion.Recent research has shown emerging evidence that the DFMs may improve performance and health in young ruminants,however,these positive outcomes were not consistent among studies and the modes of action have not been clearly defined.This review summarizes the DFM studies conducted in ruminants in the last decade,aiming to provide the new knowledge on DFM supplementation strategies for various ruminant production stages,and to identify what are the potential barriers and challenges for current ruminant industry to adopt the DFMs.Overall literature research indicates that DFMs have the potential to mitigate ruminal acidosis,improve immune response and gut health,increase productivity(growth and milk production),and reduce methane emissions or fecal shedding of pathogens.More research is needed to explore the mode of action of specific DFMs in the gut of ruminants,and the optimal supplementation strategies to promote the development and efficiency of DFM products for ruminants.
基金a part of a PhD project of Sanjay Kumar that was supported by NDRI (ICAR) fellowshipNational Initiative on Climate Resilient Agriculture, India (NICRA) for providing partial support
文摘Direct-fed microbials（DFM）, generally regarded as safe status, are successfully used in improving rumen ecology, gastro-intestinal health, feed efficiency, milk production and growth rate in ruminants. On the other hand, methanogenesis in rumen, which accounts for a significant loss of ruminant energy and increased greenhouse gas in environment, is of great concern, therefore, use of DFM for improving productivity without compromising the animal health and ecological sustainability is encouraged. The present study was conducted to investigate the methane reducing potential of bacteriocinogenic strain Pediococcus pentosaceus-34. Since, the culture showed no hemolysis on blood agar and DNase activity, hence, it was considered to be avirulent in nature, a prerequisite for any DFM. The culture also showed tolerance to pH 5.0 for 24 h with 0.5% organic acid mixture, whereas when given a shock for 2 h at different p H and organic acids concentrations, it showed growth at pH 3.0 and 4.0 with 0.1 and 1.0% organic acids, respectively, as having good animal probiotics attributes. The total gas production was significantly（P〈0.05） higher in live pedicoccal culture（LPC） and dead pedicoccal culture（DPC） both with wheat straw, when compared to the control. In sugarcane bagasse, gas production was significantly lower（P〈0.05） with LPC compared to the control and DPC both. Methane was reduced by the inclusion of LPC in sugarcane bagasse（0.07 mL CH4 mg–1 dry matter digestibility） with no effect on other rumen fermentation parameters. However, with wheat straw and LPC total gas, in vitro dry matter digestibility, total volatile fatty acids increased significantly but no reduction in methane production was observed in comparison to the control. Therefore, further research is warranted in this direction, if the bacteriocinogenic strains can be used as DFM for ruminants to improve the ruminant productivity.
基金Supported by the Autogenous Vaccine Research Project of the Poultry Health Laboratory,Poultry Science Department,University of Arkansas
文摘Objective: To evaluate the ability of Bacillus spp. as direct-fed microbials(DFM) to biodegrade al atoxin B1(AFB1) by using an in vitro digestive model simulating in vivo conditions.Methods: Sixty-nine Bacillus isolates were obtained from intestines, and soil samples were screened by using a selective media method against 0.25 and 1.00 μg/m L of AFB1 in modii ed Czapek-Dox medium. Plates were incubated at 37 °C and observed every two days for two weeks. Physiological properties of the three Bacillus spp. candidates were characterized biochemically and by 16 S r RNA sequence analyzes for identii cation. Tolerance to acidic p H, osmotic concentrations of Na Cl, bile salts were tested, and antimicrobial sensitivity proi les were also determined. Bacillus candidates were individually sporulated by using a solid fermentation method and combined. Spores were incorporated into 1 of 3 experimental feed groups: 1) Negative control group, with unmedicated starter broiler feed without AFB1; 2) Positive control group, with negative control feed contaminated with 0.01% AFB1; 3) DFM treated group, with positive control feed supplemented with 109 spores/g. After digestion time(3:15 h), supernatants and digesta were collected for high-performance liquid chromatography l uorescence detection analysis by triplicate.Results: Three out of those sixty-nine DFM candidates showed ability to biodegrade AFB1 in vitro based on growth as well as reduction of l uorescence and area of clearance around each colony in modii ed Czapek-Dox medium which was clearly visible under day light after 48 h of evaluation. Analysis of 16S-DNA identii ed the strains as Bacillus amyloliquefaciens, Bacillus megaterium and Bacillus subtilis. The three Bacillus strains were tolerant to acidic conditions(p H 2.0), tolerant to a high osmotic pressure(Na Cl at 6.5%), and were able to tolerate 0.037% bile salts after 24 h of incubation. No signii cant dif erences(P > 0.05) were observed in the concentrations of AFB1 in neither the supernatants nor digesta samples evaluated by highperformance liquid chromatography with l uorescence detection between positive control or DFM treated groups. Conclusions: In vitro digestion time was not enough to confirm biodegradation of AFB1. Further studies to evaluate the possible biodegradation ef ects of the BacillusDFM when continuously administered in experimentally contaminated feed with AFB1, are in progress.
文摘Three experiments were conducted to evaluate direct-fed microbial (<strong>DFM</strong>) supplementation on live performance, carcass characteristics, and fecal shedding of <em>E. coli</em> in feedlot steers. In Exp. 1, 400 steers (BW = 348 kg) were assigned to treatments: <strong>CON</strong> = lactose carrier only, <strong>BOV</strong> =<em> P. freudenreichii </em>(NP24) +<em> L. acidophilus</em> (NP51), <strong>BOVD</strong> = <em>P. freudenreichii</em> (NP24) +<em> L. acidophilus</em> (NP51), and <strong>COMB</strong> = BOV fed for the first 101 d on feed, followed by BOVD for the final 28 d prior to harvest. In Exp. 2 (n = 1800;BW = 354 kg) and Exp. 3 (n = 112;BW = 397 kg), steers were utilized in a randomized complete block design and assigned to DFM treatments using low dose and high dose, respectively. Fecal samples were collected prior to harvest and analyzed for <em>E. coli</em> serogroups. In Exp. 1, DFM reduced (P < 0.01) the concentration of<em> E. coli</em> O157. Prevalence of O157 was reduced by BOVD supplementation in Exp. 2 and 3 (P < 0.01 and P = 0.08, respectively), and concentration of <em>E. coli</em> O157 in positive samples was reduced in both experiments where enumeration was performed (P ≤ 0.02). Weighted mean differences across the three experiments were equal to a 33% reduction in the prevalence of E. coli O157:H7 in BOVD treated cattle. A significant reduction in prevalence of O26, O45, O103, and O121 was observed in Exp. 2 (P ≤ 0.03). These results indicate that high levels of <em>L. acidophilus</em> (NP51) may represent an effective pre-harvest food safety intervention to reduce fecal shedding of several <em>E. coli</em> serogroups.
文摘Manipulating the gastrointestinal microbial ecosystem to enhance animal performance and reproductive responses has been one of the main goals of animal science researchers and veterinarians.Recent restrictions to the use of antimicrobials as growth promoters led researchers to seek alternative practices that can show promise both from the standpoint of efficacy as well as from the practical and economic aspects.One of the alternatives that surfaced as very promising in the last few decades is the use of direct-fed microbials （DFM） as a means to modulate the effects of the gastrointestinal microbiome on the host immune status, health and productivity.
基金supported by the European Union-Next Generation EU,Mission 4 Component 1,Project Title:“Gut and Neuro Muscular system:investigating the impact of microbiota on nerve regeneration and muscle reinnervation after peripheral nerve injury”,CUP D53D23007770006,MUR:20227YB93W,to GR。
文摘The gut microbiota:The human body is colonized by a diverse and complex microbial community–including bacteria,viruses,archaea,and unicellular eukaryotes–that plays a central role in human wellbeing.Indeed,microbiota is crucial for several functions,including host metabolism,physiology,maintenance of the intestinal epithelial integrity,nutrition,and immune function,earning it the designation of a“vital organ”(Guinane and Cotter,2013).
基金funded by the Beef Cattle Research Council Cluster(FDE.18.21C)Natural Sciences and Engineering Research Council of Canada(NSERC)Discovery,NSERC Canadian Research Chair(Tier 1)program+2 种基金NSERC Alliance program(ALLRP 588541‐23)Foundation for Food&Agriculture Research Greener Cattle Initiative(Award ID 22‐000373)DSM Nutritional Products,Kaiseraugst,Switzerland。
文摘Background The enteric methane inhibitor 3-nitrooxypropanol(3-NOP)inhibits the key enzyme in ruminal methanogenesis,but whether short-term(ST)and long-term(LT)dietary supplementation has similar effects on rumen microbiota in beef cattle and how microbes change after 3-NOP withdrawal have not been studied.This study investigated changes in rumen bacteria,archaea,and protozoa after ST and LT dietary supplementation and removal of 3-NOP using metataxonomic analysis.Results A total of 143 rumen samples were collected from two beef cattle studies with 3-NOP supplementation.The ST study(95 samples)used eight ruminally cannulated beef cattle in a 4×4 Latin square design with four 28-d of 3-NOP treatments[mg/kg of dry matter(DM)]:control:0,low:53,med:161,and high:345.The LT study(48 samples)was a completely randomized design with two 3-NOP treatments[control:0,and high:280 mg/kg of DM)fed for 112-d followed by a 16-d withdrawal(without 3-NOP).Bacterial and archaeal communities were significantly affected by 3-NOP supplementation but limited effects on protozoal communities were observed.Under ST supplementation,the relative abundances of Prevotella,Methanobrevibacter(Mbb.)ruminantium,Methanosphaera sp.ISO3-F5,and Entodinium were increased(Q<0.05),whereas those of Mbb.gottschalkii and Epidinium were decreased(Q<0.05)with 3-NOP supplementation.In LT study,relative abundances of Mbb.ruminantium,and Methanosphaera sp.Group5 were increased(Q<0.05),while those of Saccharofermentans and Mbb.gottschalkii were decreased(Q<0.05)with 3-NOP supplementation.Comparison between 3-NOP supplementation and the withdrawal revealed increased relative abundances of Clostridia UCG-014 and Oscillospiraceae NK4A214 group and decreased those of Eubacterium nodatum group and Methanosphaera sp.Group5(P<0.05)after 3-NOP withdrawal.Further comparison of rumen microbiota between control and 3-NOP withdrawal showed significantly higher(P=0.029)relative abundances of Eggerthellaceae DNF00809,p-1088-a5 gut group,and Family XII UCG-001 in control group while no significant differences were detected for archaea and protozoa.Microbial network analysis revealed that microbial interactions differed by both 3-NOP dose and durations.Conclusions Both ST and LT supplementation affected overall rumen microbial profile,with individual microbial groups responded to 3-NOP supplementation differently.After 3-NOP withdrawal,not all microbes showed recovery,indicating that the 3-NOP driven shifts were only partially reversible.These findings provide an understanding of the effects of 3-NOP on rumen microbial communities and their adaptability to methane mitigation strategies.
基金supported by National Natural Science Foundation of China(31730091,32372900,32072743)Natural Science Foundation of Sichuan Province(2023NSFSC0237)Major Science and Technology Projects in Sichuan Province(2021ZDZX0009)。
文摘Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a potential role during this critical transitional period.However,its involvement in post-weaning diarrhea remains poorly understood.Here,we aim to elucidate the role and underlying mechanisms of Prevotella in alleviating diarrhea in weaned piglets.Results To model unsanitary housing conditions,piglets were housed in uncleaned pens containing residual fecal matter from previous occupants and exposed to cold stress by maintaining the ambient temperature at 19℃,below the optimal 28℃.Under these conditions,piglets were orally administered either a blank medium(CON,n=10×2)or Prevotella copri at 1×10^(8)CFU(Pc,n=10×2)on d 1,3,and 5.After 28 d,cold stress induced a diarrhea incidence of 33.45%in the CON group,while P.copri supplementation significantly reduced the diarrhea rate to 19.73%.Treatment with P.copri markedly improved intestinal morphology in the small intestine,decreased serum levels of lipopolysaccharide(LPS)and intestinal fatty acid-binding protein(i-FABP),and enhanced total antioxidant capacity(T-AOC)and catalase(CAT)activity.Quantitative PCR and 16S rRNA gene sequencing revealed that P.copri significantly increased the colonic abundance of Prevotella,reshaping both the composition and functional profile of the gut microbiota.Moreover,P.copri enhanced the modularity and robustness of microbial ecological networks.Untargeted metabolomic profiling of colonic contents revealed a significant enrichment of metabolites involved in the arachidonic acid pathway following P.copri supplementation.In parallel,untargeted metabolomics of P.copri culture supernatants identified differential metabolic pathways including metabolic pathways,biosynthesis of secondary metabolites,and biosynthesis of antibiotics.In vitro assays demonstrated that P.copri-derived metabolites inhibited the growth of three common porcine intestinal pathogens.Furthermore,both P.copri metabolites and arachidonic acid enhanced intestinal barrier integrity and suppressed TNF-α-induced inflammation and apoptosis in Caco-2 cells through activation of the AHR–Nrf2 signaling pathway.Conclusions These findings highlight the role of P.copri in maintaining gut homeostasis and provide new insights into microbiota-based interventions for early-life intestinal disorders.
基金supported by the National Research Foundation of Korea(2020R1F1A1074155).
文摘Recently,Prevotella spp.,a major genus of gram-negative commensal bacteria in humans,have emerged as a key microbial contributor to host metabolism due to its ability to ferment dietary fibers,produce beneficial short-chain fatty acids,and influence immune responses.However,their diversity and functional differences have created challenges for their development and therapeutic use.Recent studies have shown that specific Prevotella species,such as P.copri,P.intestinalis,and P.histicola,can strengthen gut barrier integrity and reduce metabolic imbalances.Notably,Prevotella populations can be increased through high-fiber or herbal-based treatments.Traditional herbal medicines,including fiber-rich decoctions,also demonstrate the potential to boost endogenous Prevotella communities,enhance microbial fermentation,and improve glucose and lipid balance.This perspective examines the context-dependent roles of Prevotella spp.,with emphasis on the functional heterogeneity of key species such as P.copri,suggests a framework for combining herbal modulation with species-level microbiota profiling,and outlines a research plan to explore microbe-herb synergy in treating obesity,type 2 diabetes,and related metabolic disorders.This strategy offers a new,ecology-based approach to complement standard metabolic interventions.
基金supported by the National Natural Science Foundation of China(Grant No.32160172)the Key Science-Technology Project of Inner Mongolia(2023KYPT0010)+1 种基金the Natural Science Foundation of Inner Mongolia Autonomous Region of China(Grant No.2025QN03006)the 2023 Inner Mongolia Public Institution High-level Talent Introduction Scientific Research Support Project.
文摘This study establishes and validates a method for the precise quantification of aquatic microbial loads using microbial diversity absolute quantitative sequencing.By adding synthetic spike-in DNA to water samples from the Dahei River prior to DNA extraction and 16S rRNA gene sequencing,it generates standard curves to convert sequencing data into absolute microbial copy numbers.The method,which is proved highly accurate(R^(2)>0.99),reveals a clear contrast between the river sites:the upstream community has not only a significantly higher total microbial load but also a completely different makeup of species compared to the downstream site.This approach effectively overcomes the limitations of relative abundance analysis,providing a powerful tool for environmental monitoring,and proposes key steps for future standardization to ensure data comparability and integration.
基金supported by FCT/MCTES UIDP/05608/2020(https://doi.org/10.54499/UIDP/05608/2020)UIDB/05608/2020(https://doi.org/10.54499/UIDB/05608/2020).
文摘Background:The Colorectal Cancer(CRC)pathogenesis and therapeutic efficacy are influenced by the gut microbiome,making it a promising biomarker for predicting treatment responses and adverse effects.This systematic review aims to outline the gut microbiome composition in individuals with CRC undergoing the same therapeutic regimen and evaluate interindividual microbiome profile variations to better understand how these differences may influence therapeutic outcomes.Methods:Key studies investigating the microbiome’s role in therapeutic approaches for CRC were searched in both PubMed and Cochrane databases on 12 and 22 March 2025,respectively.Eligible studies included free full-text English-language randomized clinical trials and human observational studies reporting on gut microbiome composition and treatment outcomes.RoB 2 and ROBINS-I were employed in the evaluation of bias for randomized trials and observational studies,respectively.Data extracted was narratively analyzed.Results:Six studies involving a total of 361 individuals were included.Therapeutic interventions,either standard treatments and/or those targeting the gut microbiome,generally increased probiotic taxa and reduced pro-carcinogenic bacteria.However,no consistent pattern of improved clinical outcomes was observed,suggesting that treatment mechanisms,the tumor’s nature,and individual characteristics play critical roles in microbiome modulation.Conclusion:The gut microbiome holds significant potential in clinical settings.Nonetheless,further research is needed to better understand its functional aspects and to consider the influence of treatment mechanisms,the tumor’s nature,and individual characteristics as modulators,in order to optimize clinical outcomes.
基金supported by the National Science and Technology Major Program for Noncommunicable Chronic Diseases(2023ZD0503500)the National Natural Science Foundation of China(82030102,12126602,91857118)+1 种基金the Chinese Academy of Medical Sciences Innovation Fund for Medical Sciences(2021-I2M-1-010,2019-I2M-2-003)the National High Level Hospital Clinical Research Funding(2022-GSP-GG-1,2022-GSP-GG-2)。
文摘Objective Evidence suggests that depleted gut microbialα-diversity is associated with hypertension;however,whether metabolic markers affect this relationship remains unknown.We aimed to determine the potential metabolites mediating the associations ofα-diversity with blood pressure(BP)and BP variability(BPV).Methods Metagenomics and plasma targeted metabolomics were conducted on 523 Chinese participants from the MetaSalt study.The 24-hour,daytime,and nighttime BP and BPV were calculated based on ambulatory BP measurements.Linear mixed models were used to characterize the relationships betweenα-diversity(Shannon and Chao1 index)and BP indices.Mediation analyses were performed to assess the contribution of metabolites to the observed associations.The influence of key metabolites on hypertension was further evaluated in a prospective cohort of 2,169 participants.Results Gut microbial richness(Chao1)was negatively associated with 24-hour systolic BP,daytime systolic BP,daytime diastolic BP,24-hour systolic BPV,and nighttime systolic BPV(P<0.05).Moreover,26 metabolites were strongly associated with richness(Bonferroni P<0.05).Among them,four key metabolites(imidazole propionate,2-hydroxy-3-methylbutyric acid,homovanillic acid,and hydrocinnamic acid)mediated the associations between richness and BP indices(proportions of mediating effects:14.1%–67.4%).These key metabolites were also associated with hypertension in the prospective cohort.For example,each 1-standard deviation unit increase in hydrocinnamic acid significantly reduced the risk of prevalent(OR[95%CI]=0.90[0.82,0.99];P=0.03)and incident hypertension(HR[95%CI]=0.83[0.71,0.96];P=0.01).Conclusion Our results suggest that gut microbial richness correlates with lower BP and BPV,and that certain metabolites mediate these associations.These findings provide novel insights into the pathogenesis and prevention of hypertension.
基金financially supported by the National Natural Science Foundation of China (No. 52371056)the Liaoning Provincial Youth Science Fund Project, China (Category B, No. 2025JH6/101000010)+1 种基金the Guangdong Basic and Applied Basic Research Foundation, China (No. 2024A1515240055)funding from the China Scholarship Council
文摘Microbial contamination and the resulting corrosion in aircraft fuel system pose a serious threat to flight safety.Revealing the corrosion behavior and mechanism of fuel-degrading microorganisms on tank materials is crucial for developing effective mitigation strategies.In this study,the corrosion mechanisms of two representative hydrocarbon-degrading bacteria,Alcanivorax dieselolei and Microbacterium oxydans,toward AA7075 aluminum alloy,were systematically investigated.A combination of biofilm characterization,electrochemical testing,and surface/corrosion product characterization was employed.Both strains markedly accelerated the corrosion of AA7075,as evidence by the progressive decrease in polarization resistance and the pronounced rightward shift of the potentiodynamic polarization curves.Moreover,the difference between the pitting potential(E_(pit))and the corrosion potential(E_(corr))(ΔE=E_(pit)‒E_(corr))decreased due to microbial activities,indicating a pronounced tendency toward accelerated pitting corrosion.Corrosion morphology analysis revealed that both microbes promoted localized pitting corrosion.Furthermore,analysis of aviation kerosene composition indicated that both bacteria accelerated the degradation of C8 and C9 alkanes.These findings highlight the multiple threats of microbial contamination,material degradation,and fuel quality deterioration in fuel systems and underscore the need for targeted protection strategies for marine aviation operations.
基金supported by the National Natural Science Foundation of China(32330105 and 32301247)National Key R&D Program of China(2023YFD1801100)。
文摘Background An imbalance in the rumen microbiota caused by high-concentrate diets(HCD)is a significant endogenous trigger of mastitis.However,the underlying mechanisms remain largely unknown.Microbial extracellular vesicles(mEVs)are critical mediators of microbe-host communication.However,the role of mEVs in rumen microbiota-mediated mastitis has not yet been reported.In this study,we used an HCD-induced rumen microbiota dysbiosis model to investigate the role of mEVs-derived from rumen microbiota in the pathogenesis of mastitis.Results Our results indicate that HCD leads to mastitis and systemic inflammation.Meanwhile,HCD-fed goats exhibited substantial rumen microbiota dysbiosis and the disruption of the rumen barrier.Transplanting rumen microbiota from HCD goats into mice induced both mastitis and systemic inflammation in the recipients.Specifically,HCD increases the production of mEVs carrying microbial DNA,which can translocate across the compromised rumen barrier to the mammary gland,triggering a mammary inflammatory response via activation of the cGAS-STING-NF-κB/NLRP3 pathway.Furthermore,treating mice with mEVs isolated from the rumen fluid of HCD goats directly induced mastitis,whereas depletion of microbial DNA attenuated mEVs-induced mastitis.Conclusion Our findings suggest that HCD induces rumen microbiota dysbiosis and impairs rumen barrier function.This dysfunction leads to an increase in microbial DNA-containing mEVs,which subsequently leak into the mammary gland.Once there,these mEVs activate the cGAS-STING-NF-κB/NLRP3 signaling pathway,ultimately inducing mastitis.This study provides a new perspective on the“rumen microbiota-mammary gland axis”and enhances the understanding of the pathogenesis of mastitis.
基金Under the auspices of the National Natural Science Foundation of China(No.42430511,U20A2083)the National Key Research and Development Program of China(No.2022YFF1300900)the Science and Technology Development Program of Jilin Province(No.20210509037RQ,20230101348JC)。
文摘Elevation patterns and assembly processes of soil microbial community structures are essential for understanding biogeo-chemical processes in mountain systems.Differences in soil properties caused by elevation gradients can regulate the spatial distribu-tion and network complexity of the community structure.To explore the variations in soil microbial community structures and their as-sembly mechanisms across different elevations of the Changbai Mountains,as well as their responses to environmental factors,we col-lected microbial samples along an elevational gradient(seven elevations containing four vegetation zones)on the western slope of the Changbai Mountains using the method of metagenomic sequencing.The results showed a significant difference(P<0.05)for the Chao1 index across different elevations,but no significant difference was observed for the Shannon and Simpson indices.With increasing elev-ation,the number of nodes and links in the microbial network gradually decreased.Acidobacteria were highly connected to many nodes.The microbial communities indicated a significant distance-decay relationship(P<0.001)and were affected more by stochastic pro-cesses along the elevation gradient.The results of the Structural Equation Model(SEM)showed that elevation had direct significant ef-fect on carbon(C,P<0.01),nitrogen(N,P<0.01),and phosphorus(P,P<0.05)and weak negative effect on their ecological stoi-chiometry.Elevation was one of the major variables contributing to microbial network topology.The contribution of C and N to micro-bial network complexity was higher than that of P.Our study provides valuable insights into the responses of soil microbial communit-ies to elevation variations.
基金supported by the National Key Research and Development Program of China(Grant No.2023YFC3707900)National Natural Science Foundation of China(Grant No.42230710,42525201)Key task project for joint research and development of the Yangtze River Delta Science and Technology Innovation Community(Grant No.2022CSJGG1200).
文摘Microbially induced calcium carbonate precipitation(MICP)is an eco-friendly technology for soil improvement.Although numerous experiments have been conducted to solidify sand foundations using MICP,the mechanisms by which grain interfacial morphologies influencethe MICP process remain unclear.This study utilized 3D-printed flowcells with different boundary morphologies to investigate the effects of interfacial morphologies on the MICP process.CaCO_(3)precipitation characteristics were investigated through microscopic observation and image quantificationanalysis.The results indicate that low flowvelocities near the interface promote bacterial accumulation due to reduced hydrodynamic shear forces.Rough interfaces,compared to smooth ones,enhance bacterial adsorption owing to the larger regions of low flowvelocity,increased surface area,and the formation of local eddies,which promote greater CaCO_(3)precipitation.Compared to the regions away from the interface,a higher abundance of small CaCO_(3)crystals is observed near the interface because of the high urease activity from bacteria and the reduced shear-induced entrainment due to the low flowvelocity.Besides,larger crystals also preferentially precipitate in proximity to interfaces as the low flowvelocity enhances crystal growth according to the particle attachment theory.The presence of rough interfaces further reduces flowvelocities,leading to the precipitation of larger and more densely packed CaCO_(3)crystals.Therefore,rough interfaces promote the microbially induced calcium carbonate precipitation.This work is expected to enhance the understanding of microbially induced calcium carbonate precipitation characteristics on solid surfaces such as soil grains and contribute to the optimization of MICP applications.
基金supported by the Department of Biotechnology,Government of India(DBT),TWAS,and the Ministry of Innovative Development of Uzbekistan。
文摘The combined effects of macronutrients(Nitrogen,Phosphorus,and Potassium-N,P,K)and micronutrient fertilization on turmeric yield,soil enzymatic activity,microbial biomass,and nutrient dynamics remains poorly understood,despite their significance for sustainable soil fertility management and optimizing crop productivity across diverse agroecosystems.To investigate,a net house experiment on sandy loam Haplic Chernozem was conducted to 03 fertilizer regimes,viz.N_(75)P_(50)K_(50)kg ha^(−1)(T-2),N_(12)5P_(100)K_(100)kg ha^(−1)(T-3),and N_(100)P_(75)K_(75)+B_(3)Zn_(6)Fe_(6)kg ha^(−1)(T-4).Furthermore,the influence of these treatments was systematically assessed on soil nutrient status(N,P,K),enzymatic activities(alkaline phosphomonoesterase,dehydrogenase,fluorescein diacetate hydrolysis),microbial biomass carbon(MBC)and soil organic carbon(SOC).Balanced fertilization significantly turmeric productivity and soil health.All three fertilizer treatments showed a clear yield increase compared to the unfertilized control.Compared to the control,N_(75)P_(50)K_(50)kg/ha T-2 increased rhizome number and biomass per plant by 44.7%and 16.3%,respectively,while N_(100)P_(75)K_(75)+B_(3)Zn_(6)Fe_(6)kg/ha T-4 further enhanced them by 86.6%and 27.7%.T-3 produced the most significant yield response by increasing the rhizome biomass by 38.0%and rhizome number per plant by 100%compared to the control.The nutrient availability was also substantially improved.T-2 enhanced the soil nitrogen contents by 83.3%with maximum N levels observed in T-3&T-4.Phosphorus increased by 61.5%in T-3 and 37.3%in T-4,while potassium was enhanced by 12.9%in T-3 relative to the control,respectively.Enzymatic activities were markedly enhanced as T-3 was recorded to improve alkaline phosphomonoesterase(APA),dehydrogenase(DHA)and fluorescein diacetate hydrolysis(FDA)by 50.6%,37.4%,and 43.4%,where T-4 increased by 32.2%,30.9%,and 35.9%,respectively compared to control.MBC and SOC also rose significantly,with SOC increased by 13.8%(T-2),41.6%(T-3),and 47.2%(T-3)relative to control.The result of this study demonstrates that the integrated macroµnutrient fertilization,particularly T-37 T-4 treatments,sustainably enhanced turmeric yield,soil nutrient availability,enzyme activity,microbial biomass,and organic carbon.These findings highlight the critical role of balanced nutrient management in sustaining soil fertility and crop productivity across agroecosystems.
基金supported by the earmarked fund from China Agriculture Research System,Ministry of Agriculture,China(CARS-372)
文摘The effects of yeast culture and directfed microbes on the growth performance of weaner lambs was examined. Thirty-two Hu lambs with inihtial weight of 22.20 （ ±0.75 ） kg were randomly assigned to one of four treatments： basal diet without additive （control）, added with yeast culture at 15 g/head/d （YEC）, YEC plus Bacillus licheniformis preparation at 2. 3 g/head/d （YBL） or plus Clostridium butyricum preparation at 2. 3 g/head/d （YCB）. The feeding trial lasted 75 d with 15 d for adaptation. Feed intake was not influenced （P 〉0. 05） by treatment. Average daily gain of growing lambs was 102, 114, 90, and 89 g/d in control, YEC, YBL, and YCB, respectively, with no significant difference （P 〉 0.05） among treatments, but the carcass weight of YEC lambs was significantly higher （P 〈 0.05） than that of other treatments. Total volatile fatty acids and acetate to propionate ratio in the rumen were unaffected, although the butyric acid concentration was higher （ P 〈 0.05 ） in the ru men fluid of YCB lambs compared with YEC lambs and slightly higher （ P 〉 0. 05 ） than in controls and YBL lambs. Solid-associated fungi population relative to total rumen bacteria 16S ribosomal DNA was significantly lower （ P 〈 0. 05 ） in YBL lambs （3.55） compared with those on YCB （23.12）. There was little difference in blood glucose and plasma urea-N concentrations among the treatments. Blood concentrations of creatinine and globulin were significantly higher （P 〈0.05） in YBL lambs, compared with the control and YEC-fed animals, and no difference with YCB lambs. Total protein and triglycerides in blood were significantly （P 〈 0.05） higher in YBL lambs, compared with controls. These serum biochemical parameters suggest that treatment increased amounts of absorbable protein but not efficiency of protein utilization and in YBL and YCB lambs. The results indicated that yeast culture improve growth performance, while little advantage could be expected from combining yeast culture with either the B. licheniformis preparation or C. butyricum preparation. More research using lower doses of B. licheniformis prepara- tion or C. butyricum preparation in combination with yeast culture is warranted.
文摘For many years, ruminant nutritionists and microbiologists have been interested in manipulating the microbial ecosystem of the rumen to improve production efficiency of different ruminant species. Removal and restriction of antibiotics subtherapeutic uses from ruminant diets has amplified interest in improving nutrient utilization and animal performance and search for more safe alternatives. Some bacterial and fungal microorganisms as a direct-fed microbial（DFM） can be the most suitable solutions. Microorganisms that are commonly used in DFM for ruminants may be classified mainly as lactic acid producing bacteria（LAB）, lactic acid utilizing bacteria（LUB）, or other microorganism＇s species like Lactobacillus, Bifidobacterium, Enterococcus, Streptococcus, Bacillus, Propionibacterium, Megasphaera elsdenii and Prevotellabryantii, in addition to some fungal species of yeast such as Saccharomyces and Aspergillus. A definitive mode of action for bacterial or fungal DFM has not been established; although a variety of mechanisms have been suggested. Bacterial DFM potentially moderate rumen conditions, and improve weight gain and feed efficiency. Fungal DFM may reduce harmful oxygen from the rumen, prevent excess lactate production, increase feed digestibility, and alter rumen fermentation patterns. DFM may also compete with and inhibit the growth of pathogens, immune system modulation, and modulate microbial balance in the gastrointestinal tract. Improved dry matter intake, milk yield, fat corrected milk yield and milk fat content were obtained with DFM administration. However, the response to DFM is not constant; depending on dosages, feeding times and frequencies, and strains of DFM. Nonetheless, recent studies have supported the positive effects of DFM on ruminant performance.
