Despite the presence of about 21%O2 in the atmosphere,organs of plants and mammals are inevitably subject to lower O2 tensions(pO2)due to high O2 demand in metabolic active cells and limited O2 transport efficiency.In...Despite the presence of about 21%O2 in the atmosphere,organs of plants and mammals are inevitably subject to lower O2 tensions(pO2)due to high O2 demand in metabolic active cells and limited O2 transport efficiency.In humans,for example,the p O2 decreases from the ambient 21%(160 mm Hg)of the inhaled air to 2%-9%in the internal organs(Brahimi-Horn and Pouyssegur,2007).To cope with this limited oxygen supply,aerobic organisms have developed a variety of adaptive responses at cellular,tissue,and organismal levels(Bailey-Serres et al.,2012).Although low O2 tensions are the normal conditions for organs,the ambient 21%O2 is usually referred to as normoxia and the lower internal concentrations as hypoxia(van Dongen and Licausi,2015).展开更多
Plant cells retain the ability for cellular reprogramming,including totipotency and pluripotency,enabling them to revert their cell fate from differentiated to dedifferentiated one and subsequently redifferentiate und...Plant cells retain the ability for cellular reprogramming,including totipotency and pluripotency,enabling them to revert their cell fate from differentiated to dedifferentiated one and subsequently redifferentiate under specific physiological and environmental cues.In response to these cues,endogenous phytohormones,genetic landscapes,and epigenetic remodeling play a significant role in initiating the reprogramming of somatic cells and re-establishment of an organized structure.Detailed studies on dedifferentiation have gradually unraveled the involvement of stem-like cells during early callus formation,along with the existence of QC-like transcriptional features in the middle cell layer of callus,which exhibits organ regeneration ability.Tracking natural variations and real-time regeneration dynamics across species,combined with single-cell RNA sequencing,will enable the identification of key developmental regulators and small peptides.These breakthroughs can be applied to enhance regeneration efficiency,improve transformation in recalcitrant species,and accelerate next-generation crop development.The current review summarizes the longstanding history and ongoing research progress in two pathways:dedifferentiation and redifferentiation.It also highlights how hormonal effects on the genetic factors and provides insights into how genetic signatures interact with epigenetic landscapes to drive these processes.It highlights the potential applications of developmental regulators for efficient gene transformation to enhance plant genetic engineering,while also addressing fundamental questions and identifying research gaps to guide future studies.展开更多
With a history of 96 years,the Institute of Zoology(IOZ)is one of the oldest scientific research institutions of the Chinese Academy of Sciences(CAS).Since its establishment,IOZ has consistently served the national st...With a history of 96 years,the Institute of Zoology(IOZ)is one of the oldest scientific research institutions of the Chinese Academy of Sciences(CAS).Since its establishment,IOZ has consistently served the national strategy and pursued the forefront of science.Since 1978 when China implemented a reform and opening up policy,especially over the past two decades,IOZ has achieved a series of world-leading science and technology achievements,deepening our understanding of mechanisms of cell programming and reprogramming,reproductive and developmental regulation,stem cell and regenerative medicine,integrated management of pest insects and rodents,endangered mechanisms and conservation of species,and animal taxonomy and evolution.In the future,IOZ will strive to seize the science highland by optimizing the layout of its disciplinary development,attracting and fostering talents,and constructing world-class research facilities and platforms,aiming to be a leading institution for the continuous innovation and development of life science both in China and the world.展开更多
China is in a process of rapid urbanization. However, along with the dramatically economic growth, there constantly emerges environmental and social constraints which may be great challenges of China＇s future sustain...China is in a process of rapid urbanization. However, along with the dramatically economic growth, there constantly emerges environmental and social constraints which may be great challenges of China＇s future sustainable development. In order to optimize the developmental mode, the latest national plan, ＂The 12th National Economic and Social Development Plan （2011-2015）＂, is establishing the ＂Main Function Zoning Strategy＂, which could be considered as a new prototype of national spatial plan and may cover all Chinese territories. Based on the latest ＂Main Function Zoning Strategy＂ stipulated in ＂The 12th National Economic and Social Development Plan （2011-2015）＂, the article builds main interlinks between the spatial development strategy and urban regulatory planning. Secondly, regulation factors in Chinese regulatory planning, which may implement the task of main function zoning, have been clarified and categorized. For each regulation factor, its regulation capability is defined by applying a coding method developed by the author. Finally, according to the output of the study, the spatial regulation approaches to implementing the ＂Main Function Zoning Strategy＂ in Chinese regulatory planning are analyzed.展开更多
The wild Lepista sordida is a kind of precious and rare edible fungus.An excellent strain of it by artificial domestication was obtained,which was high-yield and high in iron content.In this study,high-throughput comp...The wild Lepista sordida is a kind of precious and rare edible fungus.An excellent strain of it by artificial domestication was obtained,which was high-yield and high in iron content.In this study,high-throughput comparative proteomics was used to reveal the regulatory mechanism of its primordium differentiation in the early fruiting body formation.The mycelium before the primordium differentiation mainly expressed high levels of mitochondrial functional proteins and carbon dioxide concentration regulatory proteins.In young mushrooms,the highly expressed proteins were mainly involved in cell component generation,cell proliferation,nitrogen compound metabolism,nucleotide metabolism,glutathione metabolism,and purine metabolism.The differential regulation patterns of pileus and stipe growth to maturity were also revealed.The highly expressed proteins related to transcription,RNA splicing,the production of various organelles,DNA conformational change,nucleosome organization,protein processing,maturation and transport,and cell detoxification regulated the pileus development and maturity.The proteins related to carbohydrate and energy metabolism,large amounts of obsolete cytoplasmic parts,nutrient deprivation,and external stimuli regulated the stipe development and maturity.Multiple CAZymes regulated nutrient absorption,morphogenesis,spore production,stress response,and other life activities at different growth and development stages.展开更多
In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in...In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in developmental biology and other related fields.Recent technological advancements,especially those in editable genomic barcodes and single-cell high-throughput sequencing,have sparked a new wave of experimental methods for reconstructing CLTs.Here we review the existing experimental approaches to the reconstruction of CLT,which are broadly categorized as either image-based or DNA barcode-based methods.In addition,we present a summary of the related literature based on the biological insight pro-vided by the obtained CLTs.Moreover,we discuss the challenges that will arise as more and better CLT data become available in the near future.Genomic barcoding-based CLT reconstructions and analyses,due to their wide applicability and high scalability,offer the potential for novel biological discoveries,especially those related to general and systemic properties of the developmental process.展开更多
Small peptides(SPs)are pivotal signaling molecules that play essential roles in the precise regulation of plant growth,development,and stress responses.Recent advancements in sequencing technologies,bioinformatics app...Small peptides(SPs)are pivotal signaling molecules that play essential roles in the precise regulation of plant growth,development,and stress responses.Recent advancements in sequencing technologies,bioinformatics approaches,and biochemical and molecular techniques have significantly enhanced the accuracy of SP identification,unveiling their diverse biological functions in plants.This review provides a comprehensive overview of the characteristics and methodologies for identifying SPs in plants.It highlights recent discoveries regarding the biological roles and signaling pathways of SPs in regulating plant growth,development,and plant-microbial interactions,as well as their contributions to plant resilience under various environmental stresses,including abiotic stress,nutrient deficiencies,and biotic challenges.Additionally,we discuss current insights into the potential applications of SPs and outline future research directions aimed at leveraging these molecules to enhance plant adaptation to environmental challenges.By integrating recent findings,this review lays a foundation for advancing the understanding and utilization of SPs to improve plant resilience and productivity.展开更多
A systemic study was initiated to identify stage-specific expression genes in fish embryogenesis by using suppression subtractive hybridization (SSH) technique. In this study, we presented a preliminary result on scre...A systemic study was initiated to identify stage-specific expression genes in fish embryogenesis by using suppression subtractive hybridization (SSH) technique. In this study, we presented a preliminary result on screen for stage-specific expression genes between tail bud stage (TBS) and heartbeat beginning stage (HBS) in gynogenetic silver crucian carp (Carassius auratus gibelio). Two SSH plasmid libraries specific for TBS embryos and HBS embryos were constructed, and stage-specific expression genes were screened between the two stages. 1963 TBS positive clones and 2466 HBS positive clones were sampled to PCR amplification, and 1373 TBS and 1809 HBS PCR positive clones were selected to carry out dot blots. 169 TBS dot blot positive clones and 272 HBS dot blot positive clones were sequenced. Searching GenBank by using these nucleotide sequences indicated that most of the TBS dot blot positive clones could not be found homologous sequences in the database, while known genes were mainly detected from HBS dot blot positive clones. Of the 79 known genes, 20 were enzymes or kinases involved in important metabolism of embryonic development. Moreover, specific expressions of partial genes were further confirmed by virtual northern blots. This study is the first step for making a large attempt to study temporal and spatial control of gene expression in the gynogenetic fish embryogenesis.展开更多
How osteoblast cells are induced is a central question for understanding skeletal formation. Abnormal osteoblast differentiation leads to a broad range of devastating craniofacial diseases. Here we have investigated i...How osteoblast cells are induced is a central question for understanding skeletal formation. Abnormal osteoblast differentiation leads to a broad range of devastating craniofacial diseases. Here we have investigated intramembranous ossification during cranial bone development in mouse models of skeletal genetic diseases that exhibit craniofacial bone defects. The GNAS gene encodes Gαs that transduces GPCR signaling. GNAS activation or loss-of-function mutations in humans cause fibrous dysplasia(FD) or progressive osseous heteroplasia(POH) that shows craniofacial hyperostosis or craniosynostosis, respectively. We find here that, while Hh ligand-dependent Hh signaling is essential for endochondral ossification, it is dispensable for intramembranous ossification, where Gαsregulates Hh signaling in a ligand-independent manner. We further show that Gαscontrols intramembranous ossification by regulating both Hh and Wnt/β-catenin signaling. In addition, Gαsactivation in the developing cranial bone leads to reduced ossification but increased cartilage presence due to reduced cartilage dissolution, not cell fate switch. Small molecule inhibitors of Hh and Wnt signaling can effectively ameliorate cranial bone phenotypes in mice caused by loss or gain of Gnas function mutations, respectively. Our work shows that studies of genetic diseases provide invaluable insights in both pathological bone defects and normal bone development, understanding both leads to better diagnosis and therapeutic treatment of bone diseases.展开更多
Effects of maternal dietary zinc deficiency on prenatal and postnatal brain development were investigated in ICR strain mice. From d 1 of pregnancy (E0) until postnatal d 20 (P20), maternal mice were fed experimental ...Effects of maternal dietary zinc deficiency on prenatal and postnatal brain development were investigated in ICR strain mice. From d 1 of pregnancy (E0) until postnatal d 20 (P20), maternal mice were fed experimental diets that contained 1 mg Zn/kg/day (severe zinc deficient, SZD), 5 mg Zn/kg/day (marginal zinc deficient, MZD), 30 mg Zn/kg/day (zinc adequately supplied, ZA) or 100 mg Zn/kg/day (zinc supplemented, ZS and pair-fed, PF). Brains of offspring from these dietary groups were examined at various developmental stages for expression of nestin, an intermediate filament protein found in neural stem cells and young neurons. Immunocytochemistry showed nestin expression in neural tube 10.5 d post citrus (dpc) as well as in the cerebral cortex and neural tube from 10.5 dpc to postnatal d 10 (P10). Nestin immunoreactivities in both brain and neural tube of those zinc-supplemented control groups (ZA, ZS, PF) were stronger than those in zinc-deficient groups (SZD and MZD). Western blot analysis confirmed that nestin levels in pooled brain extracts from each of the zinc-supplemented groups (ZA, ZS, PF) were much higher than those from the zinc-deficient groups (SZD and MZD) from 10.5 dpc to P10. Immunostaining and Western blots showed no detectable nestin in any of the experimental and control group brains after P20. These observations of an association between maternal zinc deficiency and decreased nestin protein levels in brains of offspring suggest that zinc deficiency suppresses development of neural stem cells, an effect which may lead to neuroanatomical and behavioral abnormalities in adults.展开更多
Anuran metamorphosis involves systematic transformations of individual organs in a thyroid hormone (TH)-dependent manner. Morphological and cellular studies have shown that the removal of larval or- gans/tissues such ...Anuran metamorphosis involves systematic transformations of individual organs in a thyroid hormone (TH)-dependent manner. Morphological and cellular studies have shown that the removal of larval or- gans/tissues such the tail and the tadpole intestinal epithelium is through programmed cell death or apop- tosis. Recent molecular investigations suggest that TH regulates metamorphosis by regulating target gene expression through thyroid hormone receptors (TRs), which are DNA-binding transcription factors. Cloning and characterization of TH response genes show that diverse groups of early response genes are induced by TH. The products of these TH response genes are believed to directly or indirectly affect the expression and/or functions of cell death genes, which are conserved at both sequence and function levels in different animal species. A major challenge for future research lies at determining the signaling pathways leading to the activation of apoptotic processes and whether different death genes are involved in the regulation of apoptosis in different tissues/organs to effect tissue-specific transformations.展开更多
Methylation of adenosine base on the nitrogen-6 position （N6-methyladenosine, m^6A） is the most common and abundant modification on mRNA transcripts. This post-transcriptional modification was first described in the...Methylation of adenosine base on the nitrogen-6 position （N6-methyladenosine, m^6A） is the most common and abundant modification on mRNA transcripts. This post-transcriptional modification was first described in the 1970s in hepatoma cells （Desrosiers et al., 1974）.展开更多
This report,"Mandible exosomal ssc-mir-133b regulates tooth development in miniature swine via endogenous apoptosis" by Li et al. is an important step forward in describing the factors that control tooth dev...This report,"Mandible exosomal ssc-mir-133b regulates tooth development in miniature swine via endogenous apoptosis" by Li et al. is an important step forward in describing the factors that control tooth development in a large animal model. That many of the regulatory miRNA pathways have been elucidated in murine species have always begged the question as to how relevant they展开更多
The V-MYC avian myelocytomatosis viral-related onco- gene, a neuroblastoma-derived gene （MYCN, MIM： 164840） located on chromosome 2p24, was previously found to be associated with Feingold syndrome 1 （FGLDS1, MIM：...The V-MYC avian myelocytomatosis viral-related onco- gene, a neuroblastoma-derived gene （MYCN, MIM： 164840） located on chromosome 2p24, was previously found to be associated with Feingold syndrome 1 （FGLDS1, MIM： 164280） [1]. FGLDS1 is an autosomal dominant disorder characterized by variable combinations of microcephaly, limb malformations, esophageal and duodenal atresias, and learning disabilities. Cardiac and renal malformations, vertebral anomalies, and deafness have also been described in a minority of patients [2]. Despite the involvement of intellectual disability in FGLDS1, the molecular mechanisms of the MYCN gene in regulating brain development remain largely unclear.Some truncated mutations in the N terminus of the MYCN have been identified in FGLDS1 [1, 3].展开更多
The developing olfactory system - merging of the periph- eral and central nervous systems： The olfactory system is responsible for the sense of smell and is comprised of a complex topographic map that regenerates thr...The developing olfactory system - merging of the periph- eral and central nervous systems： The olfactory system is responsible for the sense of smell and is comprised of a complex topographic map that regenerates throughout life. In rodents each olfactory sensory neuron expresses one of N 1,300 odorant receptors with the neurons being distributed mosaically within the epithelium. The axons of the sensory neurons do not maintain near-neighbour relationships and instead project to disparate topographic targets in the olfac- tory bulb within the central nervous system. The develop- ment of the targets relies on the intermingling of the sensory axons with the interneurons, glia and second order neurons of the olfactory bulb. Thus the formation of the olfactory system involves the coordinated integration of the axons of the peripheral olfactory sensory neurons with the cells of the olfactory bulb.展开更多
Developing transgenic and/or gene-edited plants largely depends on tedious,lengthy,and costly in vitro regeneration protocols.While plants have remarkable regeneration ability,not all species,genotypes,or even explant...Developing transgenic and/or gene-edited plants largely depends on tedious,lengthy,and costly in vitro regeneration protocols.While plants have remarkable regeneration ability,not all species,genotypes,or even explants exhibit the same transformation and regeneration potential under in vitro conditions.To tackle this bottleneck,we have developed a seamless and user-friendly system to induce transgenic and gene-edited de novo meristems via a synthetic cascade comprising a wound-induced regeneration pathway,plant developmental regulators(DRs),and gene-editing reagents.WOUND INDUCED DEDIFFER-ENTIATION 1(WIND1)was used as a transcriptional regulator to control the expression of various DR genes driven by ENHANCER OF SHOOT REGENERATION 1(ESR1)promoter.This cascade was strategically applied in planta to the non-meristematic internode of Nicotiana benthamiana to induce meristematic ac-tivity and regenerate de novo shoots with knockout mutations of the phytoene desaturase(PDS)gene.Among the DR genes tested,the strategic expression of isopentenyl transferase(ipt)driven by the ESR1 promoter under the control of WIND1 proved most effective for efffcient regeneration in tobacco.Subse-quently,this synthetic toolkit was successfully applied to both tomato and soybean.WIND1 served as a key cellular reprogramming factor,initiating differentiation,while ipt complemented this process by pro-moting organogenesis through cytokinin biosynthesis.This methodology offers a transformative approach to overcome barriers in plant biotechnology,potentially accelerating the generation of transgenic and gene-edited plants without reliance,or with minimal reliance,on conventional tissue-culture intermediates.展开更多
Root hairs are tubular outgrowths specifically differentiated from epidermal cells in a differentiation zone. The formation of root hairs greatly increases the surface area of a root and maximizes its ability to absor...Root hairs are tubular outgrowths specifically differentiated from epidermal cells in a differentiation zone. The formation of root hairs greatly increases the surface area of a root and maximizes its ability to absorb water and inorganic nutrients essential for plant growth and development. Root hair development is strictly regulated by intracellular and intercellular signal communications. Cell surface-localized receptor-like protein kinases （P, LKs） have been shown to be important components in these cellular processes, tn this review, the functions of a number of key P, LKs in regulating Arabidopsis root hair development are discussed, especially those involved in root epidermal cell fate determination and root hair tip growth.展开更多
Gene regulatory network (GRN) inference from gene expression data is asignificant approach to understanding aspects of the biological system.Compared with generalized correlation-based methods, causality-inspiredones ...Gene regulatory network (GRN) inference from gene expression data is asignificant approach to understanding aspects of the biological system.Compared with generalized correlation-based methods, causality-inspiredones seem more rational to infer regulatory relationships. We proposeGRINCD, a novel GRN inference framework empowered by graph representationlearning and causal asymmetric learning, considering both linearand non-linear regulatory relationships. First, high-quality representation ofeach gene is generated using graph neural network. Then, we apply theadditive noise model to predict the causal regulation of each regulator-targetpair. Additionally, we design two channels and finally assemble them forrobust prediction. Through comprehensive comparisons of our frameworkwith state-of-the-art methods based on different principles on numerousdatasets of diverse types and scales, the experimental results show that ourframework achieves superior or comparable performance under variousevaluation metrics. Our work provides a new clue for constructing GRNs,and our proposed framework GRINCD also shows potential in identifyingkey factors affecting cancerdevelopment.展开更多
BELl-like transcription factors are ubiquitous in plants and interact with KNOTTEDI-types to regulate numerous developmental processes. In potato, the RNA of several BELl-like transcription factors has been identified...BELl-like transcription factors are ubiquitous in plants and interact with KNOTTEDI-types to regulate numerous developmental processes. In potato, the RNA of several BELl-like transcription factors has been identified in phloem cells. One of these, StBEL5, and its Knox protein partner regulate tuber formation by targeting genes that control growth. RNA detection methods and grafting experiments demonstrated that StBEL5 transcripts move across a graft union to localize in stolon tips, the site of tuber induction. This movement of RNA originates in source leaf veins and petioles and is induced by a short-day photoperiod, regulated by the untranslated regions, and correlated with enhanced tuber production. Addition of the StBEL5 untranslated regions to another BELl.like mRNA resulted in its preferential transport to stolon tips leading to increased tuber production. Upon fusion of the untranslated regions of StBEL5 to a β-glucuronidase marker, translation in tobacco protoplasts was repressed by those constructs containing the 3＇ untranslated sequence. The untranslated regions of the StBEL5 mRNA are involved in mediating its long-distance transport and in controlling translation. The 3＇ untranslated sequence contains an abundance of conserved motifs that may serve as binding motifs for RNA-binding proteins. Because of their presence in the phloem sieve tube system, their unique untranslated region sequences and their diverse RNA accumulation patterns, the family of BEL1-like RNAs from potato represents a valuable model for studying the long-distance transport of full-length mRNAs and their role in development.展开更多
Phospholipids, including phosphatidic acid （PA）, phosphatidylcholine （PC）, phosphatidylethanolamine （PE）, phosphatidylglycerol （PC）, phosphatidylserine （PS） and phosphoinositides, have emerged as an importan...Phospholipids, including phosphatidic acid （PA）, phosphatidylcholine （PC）, phosphatidylethanolamine （PE）, phosphatidylglycerol （PC）, phosphatidylserine （PS） and phosphoinositides, have emerged as an important class of cellular messenger molecules in various cellular and physiological processes, of which PA attracts much attention of researchers. In addition to its effect on stimulating vesicle trafficking, many studies have demonstrated that PA plays a crucial role in various signaling pathways by binding target proteins and regulating their activity and subcellular localization. Here, we summarize the functional mechanisms and target proteins underlying PA-mediated regulation of cellular signaling, development, hormonal responses, and stress responses in plants.展开更多
文摘Despite the presence of about 21%O2 in the atmosphere,organs of plants and mammals are inevitably subject to lower O2 tensions(pO2)due to high O2 demand in metabolic active cells and limited O2 transport efficiency.In humans,for example,the p O2 decreases from the ambient 21%(160 mm Hg)of the inhaled air to 2%-9%in the internal organs(Brahimi-Horn and Pouyssegur,2007).To cope with this limited oxygen supply,aerobic organisms have developed a variety of adaptive responses at cellular,tissue,and organismal levels(Bailey-Serres et al.,2012).Although low O2 tensions are the normal conditions for organs,the ambient 21%O2 is usually referred to as normoxia and the lower internal concentrations as hypoxia(van Dongen and Licausi,2015).
基金funded by National Key R&D Program of China(Grant No.2024YFD2200600)Science and Technology Project of Hebei Education Department(Grant No.QN2022017)+3 种基金Natural Science Foundation of Hebei Province(Grant No.C2023204062)Fundamental Scientific Research Fund of Universities in Hebei Province(KY2021059)China Agriculture Research System(Grant No.CARS-30-2-07)Hebei Agriculture Research System(Grant Nos.HBCT2024190201,HBCT2024190203).
文摘Plant cells retain the ability for cellular reprogramming,including totipotency and pluripotency,enabling them to revert their cell fate from differentiated to dedifferentiated one and subsequently redifferentiate under specific physiological and environmental cues.In response to these cues,endogenous phytohormones,genetic landscapes,and epigenetic remodeling play a significant role in initiating the reprogramming of somatic cells and re-establishment of an organized structure.Detailed studies on dedifferentiation have gradually unraveled the involvement of stem-like cells during early callus formation,along with the existence of QC-like transcriptional features in the middle cell layer of callus,which exhibits organ regeneration ability.Tracking natural variations and real-time regeneration dynamics across species,combined with single-cell RNA sequencing,will enable the identification of key developmental regulators and small peptides.These breakthroughs can be applied to enhance regeneration efficiency,improve transformation in recalcitrant species,and accelerate next-generation crop development.The current review summarizes the longstanding history and ongoing research progress in two pathways:dedifferentiation and redifferentiation.It also highlights how hormonal effects on the genetic factors and provides insights into how genetic signatures interact with epigenetic landscapes to drive these processes.It highlights the potential applications of developmental regulators for efficient gene transformation to enhance plant genetic engineering,while also addressing fundamental questions and identifying research gaps to guide future studies.
文摘With a history of 96 years,the Institute of Zoology(IOZ)is one of the oldest scientific research institutions of the Chinese Academy of Sciences(CAS).Since its establishment,IOZ has consistently served the national strategy and pursued the forefront of science.Since 1978 when China implemented a reform and opening up policy,especially over the past two decades,IOZ has achieved a series of world-leading science and technology achievements,deepening our understanding of mechanisms of cell programming and reprogramming,reproductive and developmental regulation,stem cell and regenerative medicine,integrated management of pest insects and rodents,endangered mechanisms and conservation of species,and animal taxonomy and evolution.In the future,IOZ will strive to seize the science highland by optimizing the layout of its disciplinary development,attracting and fostering talents,and constructing world-class research facilities and platforms,aiming to be a leading institution for the continuous innovation and development of life science both in China and the world.
文摘China is in a process of rapid urbanization. However, along with the dramatically economic growth, there constantly emerges environmental and social constraints which may be great challenges of China＇s future sustainable development. In order to optimize the developmental mode, the latest national plan, ＂The 12th National Economic and Social Development Plan （2011-2015）＂, is establishing the ＂Main Function Zoning Strategy＂, which could be considered as a new prototype of national spatial plan and may cover all Chinese territories. Based on the latest ＂Main Function Zoning Strategy＂ stipulated in ＂The 12th National Economic and Social Development Plan （2011-2015）＂, the article builds main interlinks between the spatial development strategy and urban regulatory planning. Secondly, regulation factors in Chinese regulatory planning, which may implement the task of main function zoning, have been clarified and categorized. For each regulation factor, its regulation capability is defined by applying a coding method developed by the author. Finally, according to the output of the study, the spatial regulation approaches to implementing the ＂Main Function Zoning Strategy＂ in Chinese regulatory planning are analyzed.
基金funded by the Shandong Edible Fungus Agricultural Technology System(SDAIT-07-02)the National Natural Science Foundation of China(Grant No.32000041 and 32272789)+2 种基金the Shandong Provincial Natural Science Foundation,China(ZR2020QC005)the Qingdao Agricultural University Scientific Research Foundation(6631120076)horizontal project:Breeding and property protection of new varieties of factory produced Hypsizygus marmoreus(20183702012614).
文摘The wild Lepista sordida is a kind of precious and rare edible fungus.An excellent strain of it by artificial domestication was obtained,which was high-yield and high in iron content.In this study,high-throughput comparative proteomics was used to reveal the regulatory mechanism of its primordium differentiation in the early fruiting body formation.The mycelium before the primordium differentiation mainly expressed high levels of mitochondrial functional proteins and carbon dioxide concentration regulatory proteins.In young mushrooms,the highly expressed proteins were mainly involved in cell component generation,cell proliferation,nitrogen compound metabolism,nucleotide metabolism,glutathione metabolism,and purine metabolism.The differential regulation patterns of pileus and stipe growth to maturity were also revealed.The highly expressed proteins related to transcription,RNA splicing,the production of various organelles,DNA conformational change,nucleosome organization,protein processing,maturation and transport,and cell detoxification regulated the pileus development and maturity.The proteins related to carbohydrate and energy metabolism,large amounts of obsolete cytoplasmic parts,nutrient deprivation,and external stimuli regulated the stipe development and maturity.Multiple CAZymes regulated nutrient absorption,morphogenesis,spore production,stress response,and other life activities at different growth and development stages.
基金supported by the National Key Research and Development Program of China(2021YFF1200904,2021YFA1302500 to J.-R.Y.)the National Natural Science Foundation of China(32122022,31871320 to J.-R.Y.)by Science and Technology Planning Project of Guangdong Province,China(2014A030304053 to X.Z.).
文摘In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in developmental biology and other related fields.Recent technological advancements,especially those in editable genomic barcodes and single-cell high-throughput sequencing,have sparked a new wave of experimental methods for reconstructing CLTs.Here we review the existing experimental approaches to the reconstruction of CLT,which are broadly categorized as either image-based or DNA barcode-based methods.In addition,we present a summary of the related literature based on the biological insight pro-vided by the obtained CLTs.Moreover,we discuss the challenges that will arise as more and better CLT data become available in the near future.Genomic barcoding-based CLT reconstructions and analyses,due to their wide applicability and high scalability,offer the potential for novel biological discoveries,especially those related to general and systemic properties of the developmental process.
基金supported by grants from the National Key R&D Program of China(Grant No.2024YFA1306700 to H.L.)the National Natural Science Foundation of China(Grant Nos.U22A20494 to H.L.and 32260074 to F.X.)+1 种基金the Central Government's Guidance Fund for Local Science and Technology Development Project(Grant No.ZYYD2025ZY05 to F.X.)the Youth Science Foundation of Xinjiang Uygur Autonomous Region(Grant No.2022D01C94 to F.X.)。
文摘Small peptides(SPs)are pivotal signaling molecules that play essential roles in the precise regulation of plant growth,development,and stress responses.Recent advancements in sequencing technologies,bioinformatics approaches,and biochemical and molecular techniques have significantly enhanced the accuracy of SP identification,unveiling their diverse biological functions in plants.This review provides a comprehensive overview of the characteristics and methodologies for identifying SPs in plants.It highlights recent discoveries regarding the biological roles and signaling pathways of SPs in regulating plant growth,development,and plant-microbial interactions,as well as their contributions to plant resilience under various environmental stresses,including abiotic stress,nutrient deficiencies,and biotic challenges.Additionally,we discuss current insights into the potential applications of SPs and outline future research directions aimed at leveraging these molecules to enhance plant adaptation to environmental challenges.By integrating recent findings,this review lays a foundation for advancing the understanding and utilization of SPs to improve plant resilience and productivity.
基金This work was supported by the National Nat-ural Science Foundation of China(Grant No.30130240),the Chinese Academy of Sciences(GrantNo.KSCX2-SW-303).
文摘A systemic study was initiated to identify stage-specific expression genes in fish embryogenesis by using suppression subtractive hybridization (SSH) technique. In this study, we presented a preliminary result on screen for stage-specific expression genes between tail bud stage (TBS) and heartbeat beginning stage (HBS) in gynogenetic silver crucian carp (Carassius auratus gibelio). Two SSH plasmid libraries specific for TBS embryos and HBS embryos were constructed, and stage-specific expression genes were screened between the two stages. 1963 TBS positive clones and 2466 HBS positive clones were sampled to PCR amplification, and 1373 TBS and 1809 HBS PCR positive clones were selected to carry out dot blots. 169 TBS dot blot positive clones and 272 HBS dot blot positive clones were sequenced. Searching GenBank by using these nucleotide sequences indicated that most of the TBS dot blot positive clones could not be found homologous sequences in the database, while known genes were mainly detected from HBS dot blot positive clones. Of the 79 known genes, 20 were enzymes or kinases involved in important metabolism of embryonic development. Moreover, specific expressions of partial genes were further confirmed by virtual northern blots. This study is the first step for making a large attempt to study temporal and spatial control of gene expression in the gynogenetic fish embryogenesis.
基金supported by the NIH grants R01DE025866 from NIDCRR01AR070877 from NIAMSsupported by the 111 Project, MOE (B14038), China
文摘How osteoblast cells are induced is a central question for understanding skeletal formation. Abnormal osteoblast differentiation leads to a broad range of devastating craniofacial diseases. Here we have investigated intramembranous ossification during cranial bone development in mouse models of skeletal genetic diseases that exhibit craniofacial bone defects. The GNAS gene encodes Gαs that transduces GPCR signaling. GNAS activation or loss-of-function mutations in humans cause fibrous dysplasia(FD) or progressive osseous heteroplasia(POH) that shows craniofacial hyperostosis or craniosynostosis, respectively. We find here that, while Hh ligand-dependent Hh signaling is essential for endochondral ossification, it is dispensable for intramembranous ossification, where Gαsregulates Hh signaling in a ligand-independent manner. We further show that Gαscontrols intramembranous ossification by regulating both Hh and Wnt/β-catenin signaling. In addition, Gαsactivation in the developing cranial bone leads to reduced ossification but increased cartilage presence due to reduced cartilage dissolution, not cell fate switch. Small molecule inhibitors of Hh and Wnt signaling can effectively ameliorate cranial bone phenotypes in mice caused by loss or gain of Gnas function mutations, respectively. Our work shows that studies of genetic diseases provide invaluable insights in both pathological bone defects and normal bone development, understanding both leads to better diagnosis and therapeutic treatment of bone diseases.
基金grants from National Basic Research Program (G 1999054000) andNational Natural Science FOundation of China (No.39770643, 398702
文摘Effects of maternal dietary zinc deficiency on prenatal and postnatal brain development were investigated in ICR strain mice. From d 1 of pregnancy (E0) until postnatal d 20 (P20), maternal mice were fed experimental diets that contained 1 mg Zn/kg/day (severe zinc deficient, SZD), 5 mg Zn/kg/day (marginal zinc deficient, MZD), 30 mg Zn/kg/day (zinc adequately supplied, ZA) or 100 mg Zn/kg/day (zinc supplemented, ZS and pair-fed, PF). Brains of offspring from these dietary groups were examined at various developmental stages for expression of nestin, an intermediate filament protein found in neural stem cells and young neurons. Immunocytochemistry showed nestin expression in neural tube 10.5 d post citrus (dpc) as well as in the cerebral cortex and neural tube from 10.5 dpc to postnatal d 10 (P10). Nestin immunoreactivities in both brain and neural tube of those zinc-supplemented control groups (ZA, ZS, PF) were stronger than those in zinc-deficient groups (SZD and MZD). Western blot analysis confirmed that nestin levels in pooled brain extracts from each of the zinc-supplemented groups (ZA, ZS, PF) were much higher than those from the zinc-deficient groups (SZD and MZD) from 10.5 dpc to P10. Immunostaining and Western blots showed no detectable nestin in any of the experimental and control group brains after P20. These observations of an association between maternal zinc deficiency and decreased nestin protein levels in brains of offspring suggest that zinc deficiency suppresses development of neural stem cells, an effect which may lead to neuroanatomical and behavioral abnormalities in adults.
文摘Anuran metamorphosis involves systematic transformations of individual organs in a thyroid hormone (TH)-dependent manner. Morphological and cellular studies have shown that the removal of larval or- gans/tissues such the tail and the tadpole intestinal epithelium is through programmed cell death or apop- tosis. Recent molecular investigations suggest that TH regulates metamorphosis by regulating target gene expression through thyroid hormone receptors (TRs), which are DNA-binding transcription factors. Cloning and characterization of TH response genes show that diverse groups of early response genes are induced by TH. The products of these TH response genes are believed to directly or indirectly affect the expression and/or functions of cell death genes, which are conserved at both sequence and function levels in different animal species. A major challenge for future research lies at determining the signaling pathways leading to the activation of apoptotic processes and whether different death genes are involved in the regulation of apoptosis in different tissues/organs to effect tissue-specific transformations.
文摘Methylation of adenosine base on the nitrogen-6 position （N6-methyladenosine, m^6A） is the most common and abundant modification on mRNA transcripts. This post-transcriptional modification was first described in the 1970s in hepatoma cells （Desrosiers et al., 1974）.
文摘This report,"Mandible exosomal ssc-mir-133b regulates tooth development in miniature swine via endogenous apoptosis" by Li et al. is an important step forward in describing the factors that control tooth development in a large animal model. That many of the regulatory miRNA pathways have been elucidated in murine species have always begged the question as to how relevant they
基金supported by grants from the National Natural Science Foundation of China(81701494)the Shanghai Municipal Commission of Health and Family Planning(2013ZYJB0015)the Science and Technology Commission of Shanghai Municipality(14411950402)
文摘The V-MYC avian myelocytomatosis viral-related onco- gene, a neuroblastoma-derived gene （MYCN, MIM： 164840） located on chromosome 2p24, was previously found to be associated with Feingold syndrome 1 （FGLDS1, MIM： 164280） [1]. FGLDS1 is an autosomal dominant disorder characterized by variable combinations of microcephaly, limb malformations, esophageal and duodenal atresias, and learning disabilities. Cardiac and renal malformations, vertebral anomalies, and deafness have also been described in a minority of patients [2]. Despite the involvement of intellectual disability in FGLDS1, the molecular mechanisms of the MYCN gene in regulating brain development remain largely unclear.Some truncated mutations in the N terminus of the MYCN have been identified in FGLDS1 [1, 3].
基金supported by an Australian Postgraduate Award to D.A
文摘The developing olfactory system - merging of the periph- eral and central nervous systems： The olfactory system is responsible for the sense of smell and is comprised of a complex topographic map that regenerates throughout life. In rodents each olfactory sensory neuron expresses one of N 1,300 odorant receptors with the neurons being distributed mosaically within the epithelium. The axons of the sensory neurons do not maintain near-neighbour relationships and instead project to disparate topographic targets in the olfac- tory bulb within the central nervous system. The develop- ment of the targets relies on the intermingling of the sensory axons with the interneurons, glia and second order neurons of the olfactory bulb. Thus the formation of the olfactory system involves the coordinated integration of the axons of the peripheral olfactory sensory neurons with the cells of the olfactory bulb.
基金G.B.P.is grateful to the State of Texas’Governor’s University Research(GURI)for the research fundingG.B.P.,R.M.S.,and F.Z.were supported by USDA NIFA award#2021-67013-34565.
文摘Developing transgenic and/or gene-edited plants largely depends on tedious,lengthy,and costly in vitro regeneration protocols.While plants have remarkable regeneration ability,not all species,genotypes,or even explants exhibit the same transformation and regeneration potential under in vitro conditions.To tackle this bottleneck,we have developed a seamless and user-friendly system to induce transgenic and gene-edited de novo meristems via a synthetic cascade comprising a wound-induced regeneration pathway,plant developmental regulators(DRs),and gene-editing reagents.WOUND INDUCED DEDIFFER-ENTIATION 1(WIND1)was used as a transcriptional regulator to control the expression of various DR genes driven by ENHANCER OF SHOOT REGENERATION 1(ESR1)promoter.This cascade was strategically applied in planta to the non-meristematic internode of Nicotiana benthamiana to induce meristematic ac-tivity and regenerate de novo shoots with knockout mutations of the phytoene desaturase(PDS)gene.Among the DR genes tested,the strategic expression of isopentenyl transferase(ipt)driven by the ESR1 promoter under the control of WIND1 proved most effective for efffcient regeneration in tobacco.Subse-quently,this synthetic toolkit was successfully applied to both tomato and soybean.WIND1 served as a key cellular reprogramming factor,initiating differentiation,while ipt complemented this process by pro-moting organogenesis through cytokinin biosynthesis.This methodology offers a transformative approach to overcome barriers in plant biotechnology,potentially accelerating the generation of transgenic and gene-edited plants without reliance,or with minimal reliance,on conventional tissue-culture intermediates.
基金supported by grants from the National Natural Science Foundation of China(31700245 to Zhuoyun Wei,31720103902,31470380,and 31530005 to Jia Li)the China Postdoctoral Science Foundation(2018T111116 and 2016M602889 to Zhuoyun Wei)
文摘Root hairs are tubular outgrowths specifically differentiated from epidermal cells in a differentiation zone. The formation of root hairs greatly increases the surface area of a root and maximizes its ability to absorb water and inorganic nutrients essential for plant growth and development. Root hair development is strictly regulated by intracellular and intercellular signal communications. Cell surface-localized receptor-like protein kinases （P, LKs） have been shown to be important components in these cellular processes, tn this review, the functions of a number of key P, LKs in regulating Arabidopsis root hair development are discussed, especially those involved in root epidermal cell fate determination and root hair tip growth.
文摘Gene regulatory network (GRN) inference from gene expression data is asignificant approach to understanding aspects of the biological system.Compared with generalized correlation-based methods, causality-inspiredones seem more rational to infer regulatory relationships. We proposeGRINCD, a novel GRN inference framework empowered by graph representationlearning and causal asymmetric learning, considering both linearand non-linear regulatory relationships. First, high-quality representation ofeach gene is generated using graph neural network. Then, we apply theadditive noise model to predict the causal regulation of each regulator-targetpair. Additionally, we design two channels and finally assemble them forrobust prediction. Through comprehensive comparisons of our frameworkwith state-of-the-art methods based on different principles on numerousdatasets of diverse types and scales, the experimental results show that ourframework achieves superior or comparable performance under variousevaluation metrics. Our work provides a new clue for constructing GRNs,and our proposed framework GRINCD also shows potential in identifyingkey factors affecting cancerdevelopment.
基金supported by the United States Departmentof Agriculture NRI-CGP award no.2008-02806National Science Foundation-Plant Genome Research Program award no.0820659
文摘BELl-like transcription factors are ubiquitous in plants and interact with KNOTTEDI-types to regulate numerous developmental processes. In potato, the RNA of several BELl-like transcription factors has been identified in phloem cells. One of these, StBEL5, and its Knox protein partner regulate tuber formation by targeting genes that control growth. RNA detection methods and grafting experiments demonstrated that StBEL5 transcripts move across a graft union to localize in stolon tips, the site of tuber induction. This movement of RNA originates in source leaf veins and petioles and is induced by a short-day photoperiod, regulated by the untranslated regions, and correlated with enhanced tuber production. Addition of the StBEL5 untranslated regions to another BELl.like mRNA resulted in its preferential transport to stolon tips leading to increased tuber production. Upon fusion of the untranslated regions of StBEL5 to a β-glucuronidase marker, translation in tobacco protoplasts was repressed by those constructs containing the 3＇ untranslated sequence. The untranslated regions of the StBEL5 mRNA are involved in mediating its long-distance transport and in controlling translation. The 3＇ untranslated sequence contains an abundance of conserved motifs that may serve as binding motifs for RNA-binding proteins. Because of their presence in the phloem sieve tube system, their unique untranslated region sequences and their diverse RNA accumulation patterns, the family of BEL1-like RNAs from potato represents a valuable model for studying the long-distance transport of full-length mRNAs and their role in development.
基金supported by the National Natural Science Foundation of China(31721001 and 31400261)the“Ten Thousand Talent Program”Collaborative Innovation Center of Crop Stress Biology,Henan Province
文摘Phospholipids, including phosphatidic acid （PA）, phosphatidylcholine （PC）, phosphatidylethanolamine （PE）, phosphatidylglycerol （PC）, phosphatidylserine （PS） and phosphoinositides, have emerged as an important class of cellular messenger molecules in various cellular and physiological processes, of which PA attracts much attention of researchers. In addition to its effect on stimulating vesicle trafficking, many studies have demonstrated that PA plays a crucial role in various signaling pathways by binding target proteins and regulating their activity and subcellular localization. Here, we summarize the functional mechanisms and target proteins underlying PA-mediated regulation of cellular signaling, development, hormonal responses, and stress responses in plants.
