Thirty-nine deep subsurface soils(150—180 cm depth) near the outskirts of Beijing were investagated. The concentrations including n-alkanes from C_ 13 to C_ 36, pristane and phytane were in the range of 0.60 to 170...Thirty-nine deep subsurface soils(150—180 cm depth) near the outskirts of Beijing were investagated. The concentrations including n-alkanes from C_ 13 to C_ 36, pristane and phytane were in the range of 0.60 to 170.10 μg/g, with a median value of 4.26. Carbon preference index values for n-alkanes ranged from 1.08 to 2.98, with a median value of 1.48. The percentage contribution of “wax' n-alkanes was in the range of 6.03%—46.22%. A predominance of odd/even carbon n-alkanes and unresolved complex mixtures with different shapes and ranges were frequently observed. Factor analysis reduced the data set into three principal components and confirming contributions from low(19.58%), medium(20.49%) molecular weight species and long-chain n-alkanes(43.41%), respectively. Molecular biomarkers such as pristane, phytane, hopanes and steranes were detected. Based on the principal component analysis, the concentration profiles and molecular markers, it was found that the aliphatic hydrocarbons were from both biogenic and anthropogenic sources.展开更多
A suite of molecular methods targeting 16S rRNA genes (i.e., DGGE, clone and high-throughput [HTP] amplicon library sequencing) was used to profile the microbial communities in deep Fennoscandian crystalline bedrock f...A suite of molecular methods targeting 16S rRNA genes (i.e., DGGE, clone and high-throughput [HTP] amplicon library sequencing) was used to profile the microbial communities in deep Fennoscandian crystalline bedrock fracture fluids. Variation among bacterial 16S rRNA genes was examined with two commonly used primer pairs: P1/P2 and U968f/U1401r. DGGE using U968f/ U1401r mostly detected β-, γ-proteobacteria and Firmicutes, while P1/P2 primers additionally detected other proteobacterial clades and candidate divisions. However, in combination with clone libraries the U968f/U1401r primers detected a higher bacterial diversity than DGGE alone. HTP amplicon sequencing with P1/P2 revealed an abundance of the DGGE bacterial groups as well as many other bacterial taxa likely representing minor components of these communities. Archaeal diversity was investigated via DGGE or HTP amplicon sequencingusing primers A344F/ 519RP. The majority of archaea detected with HTP amplicon sequencing belonged to uncultured Thermoplasmatales and Pendant 33/DHVE3, 4, 6 groups. DGGE of the same samples detected mostly SAGMEG and Methanosarcinales archaea, but almost none of those were revealed by HTP amplicon sequencing. Overall, our results show that the inferred diversity and composition of microbial communities in deep fracture fluids is highly dependent on analytical technique and that the method should be carefully selected with this in mind.展开更多
Impact statement Tolerance of high hydrostatic pressure(HHP)is the hallmark of deep subsurface microorganisms,while its mechanisms remain under-investigated.This study explores HHP adaptation in the piezotolerant bact...Impact statement Tolerance of high hydrostatic pressure(HHP)is the hallmark of deep subsurface microorganisms,while its mechanisms remain under-investigated.This study explores HHP adaptation in the piezotolerant bacterium Orenia metallireducens across its near-full pressure range(0.1-40 MPa).At inhibitory pressure(40 MPa),the organism redirected carbon flux toward more favorable energy generation and biosynthesis using ferric mineral as the“electron sink.”Furthermore,both universal and pressure-dependent strategies enabled the organism to withstand varying pressures.These findings highlight the role of iron minerals in microbial HHP adaptation and reveal novel survival strategies,advancing our understanding of deep-life evolution and biogeochemical impacts.展开更多
基金The National Basic Research Program(973) of China(No. G1999045707)
文摘Thirty-nine deep subsurface soils(150—180 cm depth) near the outskirts of Beijing were investagated. The concentrations including n-alkanes from C_ 13 to C_ 36, pristane and phytane were in the range of 0.60 to 170.10 μg/g, with a median value of 4.26. Carbon preference index values for n-alkanes ranged from 1.08 to 2.98, with a median value of 1.48. The percentage contribution of “wax' n-alkanes was in the range of 6.03%—46.22%. A predominance of odd/even carbon n-alkanes and unresolved complex mixtures with different shapes and ranges were frequently observed. Factor analysis reduced the data set into three principal components and confirming contributions from low(19.58%), medium(20.49%) molecular weight species and long-chain n-alkanes(43.41%), respectively. Molecular biomarkers such as pristane, phytane, hopanes and steranes were detected. Based on the principal component analysis, the concentration profiles and molecular markers, it was found that the aliphatic hydrocarbons were from both biogenic and anthropogenic sources.
基金Posiva Oy for providing samples for this study and for financial supportfunded by VTT Technical Research Centre of Finland,KYT Finnish Research Program on Nuclear Waste Management(projects Geomol 2006-2010,Geomicro 2011-2014)+1 种基金the Academy of Finland(projects Deep life,Methano)the Finnish Funding Agency for Technology and Innovation(Tekes)project Metageno.
文摘A suite of molecular methods targeting 16S rRNA genes (i.e., DGGE, clone and high-throughput [HTP] amplicon library sequencing) was used to profile the microbial communities in deep Fennoscandian crystalline bedrock fracture fluids. Variation among bacterial 16S rRNA genes was examined with two commonly used primer pairs: P1/P2 and U968f/U1401r. DGGE using U968f/ U1401r mostly detected β-, γ-proteobacteria and Firmicutes, while P1/P2 primers additionally detected other proteobacterial clades and candidate divisions. However, in combination with clone libraries the U968f/U1401r primers detected a higher bacterial diversity than DGGE alone. HTP amplicon sequencing with P1/P2 revealed an abundance of the DGGE bacterial groups as well as many other bacterial taxa likely representing minor components of these communities. Archaeal diversity was investigated via DGGE or HTP amplicon sequencingusing primers A344F/ 519RP. The majority of archaea detected with HTP amplicon sequencing belonged to uncultured Thermoplasmatales and Pendant 33/DHVE3, 4, 6 groups. DGGE of the same samples detected mostly SAGMEG and Methanosarcinales archaea, but almost none of those were revealed by HTP amplicon sequencing. Overall, our results show that the inferred diversity and composition of microbial communities in deep fracture fluids is highly dependent on analytical technique and that the method should be carefully selected with this in mind.
基金funded by the National Natural Science Foundation of China(Nos.42472366,U2444218,41877321,and 92051111)Hadal Science and Technology Research Center at Shanghai Ocean University,and the Fundamental Research Funds for the Central Universities(122-G1323522144).
文摘Impact statement Tolerance of high hydrostatic pressure(HHP)is the hallmark of deep subsurface microorganisms,while its mechanisms remain under-investigated.This study explores HHP adaptation in the piezotolerant bacterium Orenia metallireducens across its near-full pressure range(0.1-40 MPa).At inhibitory pressure(40 MPa),the organism redirected carbon flux toward more favorable energy generation and biosynthesis using ferric mineral as the“electron sink.”Furthermore,both universal and pressure-dependent strategies enabled the organism to withstand varying pressures.These findings highlight the role of iron minerals in microbial HHP adaptation and reveal novel survival strategies,advancing our understanding of deep-life evolution and biogeochemical impacts.
