Deep rooting is an important trait in rice drought resistance.Genetic resources of deep-rooting varieties are valuable in breeding of water-saving and drought-resistant rice.In the present study,234BC2F7 backcross int...Deep rooting is an important trait in rice drought resistance.Genetic resources of deep-rooting varieties are valuable in breeding of water-saving and drought-resistant rice.In the present study,234BC2F7 backcross introgression lines were derived from a cross of Dongye 80(an accession of Dongxiang wild rice as the donor parent)and R974(an indica restorer line as the recurrent parent).A genetic linkage map containing 1977 bin markers was constructed by ddRADSeq for QTL analysis.Thirty-one QTLs for four root traits(the number of deep roots,the number of shallow roots,the total number of deep roots and the ratio of deep roots)were assessed on six rice chromosomes in two environments(2020 Shanghai and 2021 Hainan).Two of the QTLs,qDR5.1 and qTR5.2,were located on chromosome 5 in a 70-kb interval.They were detected in both environments.qDR5.1 explained 13.35%of the phenotypic variance in 2020 Shanghai and 12.01%of the phenotypic variance in 2021 Hainan.qTR5.2 accounted for 10.88%and 10.93%of the phenotypic variance,respectively.One QTL(qRDR2.2)for the ratio of deep roots was detected on chromosome 2 in a 210-kb interval and accounted for 6.72%of the phenotypic variance in 2020.The positive effects of these three QTLs were all from Dongxiang wild rice.Furthermore,nine and four putative candidate genes were identified in qRDR2.2 and qDR5.1/qTR5.2,respectively.These findings added to our knowledge of the genetic control of root traits in rice.In addition,this study will facilitate the future isolation of candidate genes of the deep-rooting trait and the utilization of Dongxiang wild rice in the improvement of rice drought resistance.展开更多
Digitization has created an abundance of new information sources by altering how pictures are captured.Accessing large image databases from a web portal requires an opted indexing structure instead of reducing the con...Digitization has created an abundance of new information sources by altering how pictures are captured.Accessing large image databases from a web portal requires an opted indexing structure instead of reducing the contents of different kinds of databases for quick processing.This approach paves a path toward the increase of efficient image retrieval techniques and numerous research in image indexing involving large image datasets.Image retrieval usually encounters difficulties like a)merging the diverse representations of images and their Indexing,b)the low-level visual characters and semantic characters associated with an image are indirectly proportional,and c)noisy and less accurate extraction of image information(semantic and predicted attributes).This work clearly focuses and takes the base of reverse engineering and de-normalizing concept by evaluating how data can be stored effectively.Thus,retrieval becomes straightforward and rapid.This research also deals with deep root indexing with a multidimensional approach about how images can be indexed and provides improved results in terms of good performance in query processing and the reduction of maintenance and storage cost.We focus on the schema design on a non-clustered index solution,especially cover queries.This schema provides a filter predication to make an index with a particular content of rows and an index table called filtered indexing.Finally,we include non-key columns in addition to the key columns.Experiments on two image data sets‘with and without’filtered indexing show low query cost.We compare efficiency as regards accuracy in mean average precision to measure the accuracy of retrieval with the developed coherent semantic indexing.The results show that retrieval by using deep root indexing is simple and fast.展开更多
Rice varieties tolerant to submergence regulate shoot elongation during short-term submergence by expressing the SUB1A gene.In contrast,the deep-rooted DRO1 is effectively expressed under drought conditions to enhance...Rice varieties tolerant to submergence regulate shoot elongation during short-term submergence by expressing the SUB1A gene.In contrast,the deep-rooted DRO1 is effectively expressed under drought conditions to enhance water and nutrient uptake.This study investigates the growth and yield of rice with both SUB1A and DRO1 in the background of IR64,under early-season flooding,and mid-season drought.The study used a randomized complete design with two factors:soil moisture treatments(submergence,drought,and their combination)and genotypes.The genotypes included IR64,and three near-isogenic lines(NILs):NIL-SUB1DRO1,NIL-SUB1,and NIL-DRO1.Complete submergence was imposed for 7 days on 14-day-old seedlings,while drought was imposed on control and submerged plants following a 21-day recovery period from submergence,using 42-day-old plants.Variables were measured before and after treatments(submergence and drought),and at harvest or grain maturity.The stresses negatively affected the genotypes.At harvest,IR64 and NIL-SUB1DRO1 under both stresses showed a significant reduction in tiller numbers,shoot dry weights,and yields compared to their control plants.IR64 exhibited a significant delay in reaching flowering under all stresses.The rice introgression lines showed significant improvements in tolerance to the stresses.The study showed no negative consequences of combining drought and submergence tolerance in rice.展开更多
Lame modulus （λ） and shear modulus （μ） are among the most important, intrinsic, elastic constants of rocks. Using 7. and μ could be much more advantageous than using P- and S-wave velocities （Vp and Vs）. Here...Lame modulus （λ） and shear modulus （μ） are among the most important, intrinsic, elastic constants of rocks. Using 7. and μ could be much more advantageous than using P- and S-wave velocities （Vp and Vs）. Here we quantified these equivalent isotropic elastic moduli for 115 representative rocks from the ultrahigh pressure （UHP） metamorphic terrane of the Dabie-Sulu orogenic belt （China） and their variations with pressure （P）, temperature （T）, density （p）, Vp, Vs and mineralogical composition. Both moduli increase nonlinearly and linearly with increasing pressure at low （〈200-300 MPa） and high （〉200-300 MPa） pressures, respectively. In the regime of high pressures, 7. and IX decrease quasi-linearly with increasing temperature with temperature derivatives dλ/dT and dμ/dT generally in the range of -10×10-3 to -1×10-3 GPa/℃. Dehydration of water-bearing minerals such as serpentine in peridotites and chlorite in retrograde eciogites results in an abrupt drop in 7. while μ remains almost unchanged. In Z-p, μ-p and 7.-IX plots, the main categories of UHP rocks can be characterized. Serpentinization leads to significant decreases in μ and 7. as serpentine has extremely low values of Z, μ and p. Eclogites, common mafic rocks （mafic gneiss, metagabbro and amphibolite）, and felsic rocks （orthogneiss and paragneiss） have high, moderate and low μ and λ values, respectively. For pyroxenes and olivines, λ increases but μ decreases with increasing Fe/Mg ratios. For plagioclase feldspars, both Z and μ exhibit a significant positive correlation with anorthite content. SiO2-rich felsic rocks and quartzites are deviated remarkably from the general trend lines of the acid-intermediate-mafic rocks in Vs-p, μ-p, λ-Vp,λ-Vs and μ-λ diagrams because quartz has extremely low λ （-8.1 GPa） and p （2.65 g/cm3） but moderate μ （44.4 GPa） values. Increasing the contents of garnet, rutile, ilmenite and magnetite results in a significant increase in the λ and μ values of the UHP metamorphic rocks. However, either λ or μ is insensitive to the compositional variations for pyralspite （pyrope-almandine-spessartine） solution series. The results provide potentially improved constraints on characterization of crustal composition based on the elastic properties of rocks and in situ seismic data from deep continental roots.展开更多
Background Water availability is the key limiting factor for plant productivity in drylands covering ca.40%of Earth’s land surface.For such ecosystems to retain productivity and biodiversity under climatic change,it ...Background Water availability is the key limiting factor for plant productivity in drylands covering ca.40%of Earth’s land surface.For such ecosystems to retain productivity and biodiversity under climatic change,it would be valu-able to identify/promote keystone plant species that(i)have developed strategies to more efficiently utilize moisture resources not easily accessible and(ii)improve moisture conditions for neighboring plants.The very deep-rooted Ziziphus lotus,considered an ecosystem engineer,is one such example.However,it is not known which biotic traits:(a)canopy interception of moisture/rainfall,(b)hydraulic redistribution of deep ground moisture by roots,or non-biotic factors:(c)soil’s volume,and(d)organic matter content,Z.lotus activates/modulates to play such a role.We,thus,selected dryland ecosystems where the plant dominates and measured for potential effects on the less deep-rooted Thymbra capitata.For assessing impacts on ecosystem productivity,we measured the spatial aggregation of ca.3600 T.capitata plants.As a proxy for soil moisture availability and its spatial variability,we conducted a 7-year-long study using thymes’nighttime rehydration.Sampling extended up to 15 m away from Z.lotus.Results The density of T.capitata plants growing up to 5 m around Z.lotus vs.thymes growing 10-15 m away was found significantly increased(2.5-4.5 times),while their stem/leaf moisture was ca.10%higher at predawn compared to nightfall during the dry season.This suggests that ecosystem productivity is driven by a greater soil moisture avail-ability around Z.lotus permitting more thyme daytime transpiration,in contrast to thymes growing further away.The phenomenon appeared only under dry topsoil(during the dry season;becoming stronger during dry years).Morning dew/rainfall interception from the canopy or soil depth/organic matter did not show significant effects,leaving only the hydraulic lift properties of Z.lotus as the most likely driver for soil moisture availability.Conclusions The deep-rooting properties and hydraulic lift potential of Z.lotus may be the key in permitting it to boost ecosystem productivity.Such hydraulic plant traits require more attention as they may prove valuable in com-bating desertification and restoring ecosystems in arid/semiarid regions threatened by climate change.展开更多
Background:There is limited knowledge on how to increase soil organic car-bon(SOC)stocks under tropical conditions.This study investigates SOC changes after converting land from native savanna(NS)to improved pasture(I...Background:There is limited knowledge on how to increase soil organic car-bon(SOC)stocks under tropical conditions.This study investigates SOC changes after converting land from native savanna(NS)to improved pasture(IP)land use.Methods:Two acidic soil conversion sites were examined:(i)a poorly drained slope with medium‐texture soil(Casanare[CAS]1)and(ii)flat terrain withfine‐texture soil(CAS2).Anotherflat site was evaluated(Atlántico[ATL]),withfine‐textured to moderately textured neutral soil.Soil samples were col-lected and analyzed.SOC stocks(0–60 cm soil depth)were estimated,with a complex analysis of variance analyzing pasture type and soil depth.Results:NS to IP conversion resulted in significant SOC accumulation in two regions,with losses in one(CAS2).ATL showed higher SOC accumulation than CAS.IP adoption led to SOC accumulation at depth(0–60 cm)after 10 years in CAS1.Elevated clay content in CAS2 favored SOC storage,while poorly drained areas hindered accumulation in CAS1.Cultivating rice before IP at CAS2 likely depleted SOC(0–20 cm),with 4 years of IP not restoring initial levels.Conclusions:Adopting IP over NS can increase SOC.Grassland type,soil properties,and land‐use change all influence SOC accumulation.These data inform sustainable land management for low‐emission livestock production.展开更多
基金supported by the National Modern Agricultural Industry Technology System Construction Program of China(Grant No.20212BBF63001)the Open Competition Program of Jiangxi Provincial Science and Technology in China(Grant No.20213AAF01001)+2 种基金the Jiangxi Provincial Science and Technology Support Program in China(Grant No.20203BBF63033)the Jiangxi Modern Agricultural Research Collaborative Innovation Project in China(Grant No.JXXTCX202111)the Open Project of State Key Laboratory of Rice Biology in China(Grant No.20200101)。
文摘Deep rooting is an important trait in rice drought resistance.Genetic resources of deep-rooting varieties are valuable in breeding of water-saving and drought-resistant rice.In the present study,234BC2F7 backcross introgression lines were derived from a cross of Dongye 80(an accession of Dongxiang wild rice as the donor parent)and R974(an indica restorer line as the recurrent parent).A genetic linkage map containing 1977 bin markers was constructed by ddRADSeq for QTL analysis.Thirty-one QTLs for four root traits(the number of deep roots,the number of shallow roots,the total number of deep roots and the ratio of deep roots)were assessed on six rice chromosomes in two environments(2020 Shanghai and 2021 Hainan).Two of the QTLs,qDR5.1 and qTR5.2,were located on chromosome 5 in a 70-kb interval.They were detected in both environments.qDR5.1 explained 13.35%of the phenotypic variance in 2020 Shanghai and 12.01%of the phenotypic variance in 2021 Hainan.qTR5.2 accounted for 10.88%and 10.93%of the phenotypic variance,respectively.One QTL(qRDR2.2)for the ratio of deep roots was detected on chromosome 2 in a 210-kb interval and accounted for 6.72%of the phenotypic variance in 2020.The positive effects of these three QTLs were all from Dongxiang wild rice.Furthermore,nine and four putative candidate genes were identified in qRDR2.2 and qDR5.1/qTR5.2,respectively.These findings added to our knowledge of the genetic control of root traits in rice.In addition,this study will facilitate the future isolation of candidate genes of the deep-rooting trait and the utilization of Dongxiang wild rice in the improvement of rice drought resistance.
文摘Digitization has created an abundance of new information sources by altering how pictures are captured.Accessing large image databases from a web portal requires an opted indexing structure instead of reducing the contents of different kinds of databases for quick processing.This approach paves a path toward the increase of efficient image retrieval techniques and numerous research in image indexing involving large image datasets.Image retrieval usually encounters difficulties like a)merging the diverse representations of images and their Indexing,b)the low-level visual characters and semantic characters associated with an image are indirectly proportional,and c)noisy and less accurate extraction of image information(semantic and predicted attributes).This work clearly focuses and takes the base of reverse engineering and de-normalizing concept by evaluating how data can be stored effectively.Thus,retrieval becomes straightforward and rapid.This research also deals with deep root indexing with a multidimensional approach about how images can be indexed and provides improved results in terms of good performance in query processing and the reduction of maintenance and storage cost.We focus on the schema design on a non-clustered index solution,especially cover queries.This schema provides a filter predication to make an index with a particular content of rows and an index table called filtered indexing.Finally,we include non-key columns in addition to the key columns.Experiments on two image data sets‘with and without’filtered indexing show low query cost.We compare efficiency as regards accuracy in mean average precision to measure the accuracy of retrieval with the developed coherent semantic indexing.The results show that retrieval by using deep root indexing is simple and fast.
文摘Rice varieties tolerant to submergence regulate shoot elongation during short-term submergence by expressing the SUB1A gene.In contrast,the deep-rooted DRO1 is effectively expressed under drought conditions to enhance water and nutrient uptake.This study investigates the growth and yield of rice with both SUB1A and DRO1 in the background of IR64,under early-season flooding,and mid-season drought.The study used a randomized complete design with two factors:soil moisture treatments(submergence,drought,and their combination)and genotypes.The genotypes included IR64,and three near-isogenic lines(NILs):NIL-SUB1DRO1,NIL-SUB1,and NIL-DRO1.Complete submergence was imposed for 7 days on 14-day-old seedlings,while drought was imposed on control and submerged plants following a 21-day recovery period from submergence,using 42-day-old plants.Variables were measured before and after treatments(submergence and drought),and at harvest or grain maturity.The stresses negatively affected the genotypes.At harvest,IR64 and NIL-SUB1DRO1 under both stresses showed a significant reduction in tiller numbers,shoot dry weights,and yields compared to their control plants.IR64 exhibited a significant delay in reaching flowering under all stresses.The rice introgression lines showed significant improvements in tolerance to the stresses.The study showed no negative consequences of combining drought and submergence tolerance in rice.
基金supported by the Sino Probe-deep exploration in Ministry of land and Resources of China(Sino Probe-07)the knowledge Innovation Program from Guangzhou Institute of Geochemistry,the Chinese Academy of Sciences(GIGCX-09-02)+1 种基金This is contribution No.IS-1386 from GIGCASthe Natural Sciences and Engineering Council of Canada and the Chinese Academy of Geological Sciences for the discovery and research grants(No.1212011121274)
文摘Lame modulus （λ） and shear modulus （μ） are among the most important, intrinsic, elastic constants of rocks. Using 7. and μ could be much more advantageous than using P- and S-wave velocities （Vp and Vs）. Here we quantified these equivalent isotropic elastic moduli for 115 representative rocks from the ultrahigh pressure （UHP） metamorphic terrane of the Dabie-Sulu orogenic belt （China） and their variations with pressure （P）, temperature （T）, density （p）, Vp, Vs and mineralogical composition. Both moduli increase nonlinearly and linearly with increasing pressure at low （〈200-300 MPa） and high （〉200-300 MPa） pressures, respectively. In the regime of high pressures, 7. and IX decrease quasi-linearly with increasing temperature with temperature derivatives dλ/dT and dμ/dT generally in the range of -10×10-3 to -1×10-3 GPa/℃. Dehydration of water-bearing minerals such as serpentine in peridotites and chlorite in retrograde eciogites results in an abrupt drop in 7. while μ remains almost unchanged. In Z-p, μ-p and 7.-IX plots, the main categories of UHP rocks can be characterized. Serpentinization leads to significant decreases in μ and 7. as serpentine has extremely low values of Z, μ and p. Eclogites, common mafic rocks （mafic gneiss, metagabbro and amphibolite）, and felsic rocks （orthogneiss and paragneiss） have high, moderate and low μ and λ values, respectively. For pyroxenes and olivines, λ increases but μ decreases with increasing Fe/Mg ratios. For plagioclase feldspars, both Z and μ exhibit a significant positive correlation with anorthite content. SiO2-rich felsic rocks and quartzites are deviated remarkably from the general trend lines of the acid-intermediate-mafic rocks in Vs-p, μ-p, λ-Vp,λ-Vs and μ-λ diagrams because quartz has extremely low λ （-8.1 GPa） and p （2.65 g/cm3） but moderate μ （44.4 GPa） values. Increasing the contents of garnet, rutile, ilmenite and magnetite results in a significant increase in the λ and μ values of the UHP metamorphic rocks. However, either λ or μ is insensitive to the compositional variations for pyralspite （pyrope-almandine-spessartine） solution series. The results provide potentially improved constraints on characterization of crustal composition based on the elastic properties of rocks and in situ seismic data from deep continental roots.
文摘Background Water availability is the key limiting factor for plant productivity in drylands covering ca.40%of Earth’s land surface.For such ecosystems to retain productivity and biodiversity under climatic change,it would be valu-able to identify/promote keystone plant species that(i)have developed strategies to more efficiently utilize moisture resources not easily accessible and(ii)improve moisture conditions for neighboring plants.The very deep-rooted Ziziphus lotus,considered an ecosystem engineer,is one such example.However,it is not known which biotic traits:(a)canopy interception of moisture/rainfall,(b)hydraulic redistribution of deep ground moisture by roots,or non-biotic factors:(c)soil’s volume,and(d)organic matter content,Z.lotus activates/modulates to play such a role.We,thus,selected dryland ecosystems where the plant dominates and measured for potential effects on the less deep-rooted Thymbra capitata.For assessing impacts on ecosystem productivity,we measured the spatial aggregation of ca.3600 T.capitata plants.As a proxy for soil moisture availability and its spatial variability,we conducted a 7-year-long study using thymes’nighttime rehydration.Sampling extended up to 15 m away from Z.lotus.Results The density of T.capitata plants growing up to 5 m around Z.lotus vs.thymes growing 10-15 m away was found significantly increased(2.5-4.5 times),while their stem/leaf moisture was ca.10%higher at predawn compared to nightfall during the dry season.This suggests that ecosystem productivity is driven by a greater soil moisture avail-ability around Z.lotus permitting more thyme daytime transpiration,in contrast to thymes growing further away.The phenomenon appeared only under dry topsoil(during the dry season;becoming stronger during dry years).Morning dew/rainfall interception from the canopy or soil depth/organic matter did not show significant effects,leaving only the hydraulic lift properties of Z.lotus as the most likely driver for soil moisture availability.Conclusions The deep-rooting properties and hydraulic lift potential of Z.lotus may be the key in permitting it to boost ecosystem productivity.Such hydraulic plant traits require more attention as they may prove valuable in com-bating desertification and restoring ecosystems in arid/semiarid regions threatened by climate change.
基金The Bezos Earth Fund Project"Using genetic diversity to capture carbon through deep root systems in tropical soils"The Colombian Ministry of Agriculture and Rural Development+1 种基金The CGIAR Initiative on Low Emissions Food SystemsLivestockPlus project。
文摘Background:There is limited knowledge on how to increase soil organic car-bon(SOC)stocks under tropical conditions.This study investigates SOC changes after converting land from native savanna(NS)to improved pasture(IP)land use.Methods:Two acidic soil conversion sites were examined:(i)a poorly drained slope with medium‐texture soil(Casanare[CAS]1)and(ii)flat terrain withfine‐texture soil(CAS2).Anotherflat site was evaluated(Atlántico[ATL]),withfine‐textured to moderately textured neutral soil.Soil samples were col-lected and analyzed.SOC stocks(0–60 cm soil depth)were estimated,with a complex analysis of variance analyzing pasture type and soil depth.Results:NS to IP conversion resulted in significant SOC accumulation in two regions,with losses in one(CAS2).ATL showed higher SOC accumulation than CAS.IP adoption led to SOC accumulation at depth(0–60 cm)after 10 years in CAS1.Elevated clay content in CAS2 favored SOC storage,while poorly drained areas hindered accumulation in CAS1.Cultivating rice before IP at CAS2 likely depleted SOC(0–20 cm),with 4 years of IP not restoring initial levels.Conclusions:Adopting IP over NS can increase SOC.Grassland type,soil properties,and land‐use change all influence SOC accumulation.These data inform sustainable land management for low‐emission livestock production.
