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基于简化基因组测序的树莓(Rubus corchorifolius)遗传分析 被引量:4
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作者 杨光 孙兰英 +3 位作者 段亚东 周双 张鹍 宋鹏慧 《分子植物育种》 CAS CSCD 北大核心 2019年第22期7338-7343,共6页
为了比较不同树莓种间的亲缘关系远近,分析群体的遗传进化关系,开发特异性SNP标记。本试验选用23份栽培种树莓利用简化基因组测序技术SLAF-seq测序,以黑树莓(Rubus occidentalis)基因组为参考基因组进行酶切预测,对照选择粳稻(Oryza sat... 为了比较不同树莓种间的亲缘关系远近,分析群体的遗传进化关系,开发特异性SNP标记。本试验选用23份栽培种树莓利用简化基因组测序技术SLAF-seq测序,以黑树莓(Rubus occidentalis)基因组为参考基因组进行酶切预测,对照选择粳稻(Oryza sativa spp.japonica)品种日本晴的测序数据进行比对分析。本研究共获得59.93 Mb的读长数据,读长范围在1960847~5046748之间,对照数据的双端比对效率为95.60%,酶切效率为93.52%,测序质量值Q30平均为95.07%,所有样品GC含量均值为39.16%,共获得425402个SLAF标签,其中多态性的SLAF标签共有121610个。获得749811个有效单核苷酸多态性(single nucleotide polymorphisms,SNP),利用这些SNP对23份树莓材料完成系统进化树,群体的PCA分析,从群体结构分析结果发现这23份树莓都来源于同一祖先,只是在生长发育过程中发生了遗传分化。 展开更多
关键词 树莓(Rubus corchorifolius) 简化基因组 测序 遗传分析
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Isolation and Crystal Structure of Ent-kaurane Diterpenes from Rubus corchorifolius L. f. 被引量:1
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作者 陈雪香 黄健熹 +3 位作者 欧阳文 刘晓娟 周丽萍 曹庸 《Chinese Journal of Structural Chemistry》 SCIE CAS CSCD 2015年第3期349-358,共10页
In this study, ent-Kaurane-3β,16β,17-trioi (1) and ent-kaurane-2a,16β,17-triol (2), were isolated from the leaves ofRubus corchorifolius L. f. Their structures were elucidated based on extensive spectroscopic a... In this study, ent-Kaurane-3β,16β,17-trioi (1) and ent-kaurane-2a,16β,17-triol (2), were isolated from the leaves ofRubus corchorifolius L. f. Their structures were elucidated based on extensive spectroscopic analysis. NMR experiments identified the two compounds and X-ray crystallographic analysis confirmed their crystal structures. The crystal of 1 belongs to monoclinic with space group P21 and a = 10.7641(3), b = 7.2789(3), c = 11.7862(4) A, β = 95.275(3)°, V = 919.55(6) A3, Z = 2, C20H34O4, Mr = 322.49 g/mol, Dc = 1.230 g/m3, F(000) = 376, 2 = 1.54178 A,μ = 0.661 mm-1, R = 0.0319, and wR = 0.0811 for 10889 observed reflections (I〉 2σ(I)). The crystal of 2 is classified as orthorhombic with space group P212121 and a = 10.7641(3), b = 12.72224(19), c = 21.3929(3) A, V= 1748.94(4) A3, Z= 4, C20H3404, Mr = 322.47, De = 1.225 Mg/m3 F(000) = 712, λ = 1.54184 A,μ = 0.625 mm-1, R = 0.0303 and wR = 0.0759 for 10470 observed reflections (1〉 2σ(I)). Meanwhile, the compound revealed low inhibitory activities toward HepG2, MCF-7, and SCG-7901 cells. 展开更多
关键词 Rubus corchorifolius L. f. ent-kaurane diterpenes X-ray single-crystal structure
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Genome Assembly and Population Resequencing Reveal the Geographical Divergence of Shanmei(Rubus corchorifolius)
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作者 Yinqing Yang Kang Zhang +8 位作者 Ya Xiao Lingkui Zhang Yile Huang Xing Li Shumin Chen Yansong Peng Shuhua Yang Yongbo Liu Feng Cheng 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2022年第6期1106-1118,共13页
Rubus corchorifolius(Shanmei or mountain berry,2n=14)is widely distributed in China,and its fruits possess high nutritional and medicinal values.Here,we reported a highquality chromosome-scale genome assembly of Shanm... Rubus corchorifolius(Shanmei or mountain berry,2n=14)is widely distributed in China,and its fruits possess high nutritional and medicinal values.Here,we reported a highquality chromosome-scale genome assembly of Shanmei,with contig size of 215.69 Mb and 26,696 genes.Genome comparison among Rosaceae species showed that Shanmei and Fupenzi(Rubus chingii Hu)were most closely related,followed by blackberry(Rubus occidentalis),and that environmental adaptation-related genes were expanded in the Shanmei genome.Further resequencing of 101 samples of Shanmei collected from four regions in the provinces of Yunnan,Hunan,Jiangxi,and Sichuan in China revealed that among these samples,the Hunan population of Shanmei possessed the highest diversity and represented the more ancestral population.Moreover,the Yunnan population underwent strong selection based on the nucleotide diversity,linkage disequilibrium,and historical effective population size analyses.Furthermore,genes from candidate genomic regions that showed strong divergence were significantly enriched in the flavonoid biosynthesis and plant hormone signal transduction pathways,indicating the genetic basis of adaptation of Shanmei to the local environment.The high-quality assembled genome and the variome dataset of Shanmei provide valuable resources for breeding applications and for elucidating the genome evolution and ecological adaptation of Rubus species. 展开更多
关键词 Rubus corchorifolius Genome assembly RESEQUENCING DIVERGENCE Genome evolution
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Structure analysis of ethyl ferulate from Rubus corchorifolius L.f.leaves and its inhibitory effects on HepG2 liver cancer cells
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作者 Xuexiang Chen Xian Wu +7 位作者 Guo Liu Qun Wang Sasha A.Itenberg Wen Ouyang Mingyue Song William RDixon Yong Cao Hang Xiao 《Food Bioscience》 SCIE 2022年第1期370-376,共7页
The tender leaves of Rubus corchorifolius L.f.(R.corchorifolius)have been made into herbal tea for relieving coughs in East and Southeast Asia from ancient times.Herein,we obtained an ethyl acetate extract from R.corc... The tender leaves of Rubus corchorifolius L.f.(R.corchorifolius)have been made into herbal tea for relieving coughs in East and Southeast Asia from ancient times.Herein,we obtained an ethyl acetate extract from R.corchorifolius leaves and isolated a major bioactive compound within.Structural analysis of the isolated compound was performed by spectroscopic methods and the compound was identified as ethyl ferulate.Effect of ethyl ferulate on the growth and proliferation of human liver cancer HepG2 cells and normal human liver LO2 cells was determined by MTT assay.We found that ethyl ferulate significantly suppressed the cell proliferation of HepG2 cells(IC_(50)26.4μM),while it did not cause cytotoxicity on LO2 cells.In addition,flow cytometry analysis demonstrated that ethyl ferulate inhibited HepG2 cell growth via inducing cellular apoptosis.Specifically,ethyl ferulate reduced the electrical potential of the mitochondrial membrane and increased the concentration of calcium ions inside cells.Moreover,these changes were accompanied by increases in the expression of the pro-apoptotic proteins,such as cleaved caspase-3 and Bax.In contrast,cell morphology and growth of LO2 cells remained unaffected.In conclusion,for the first time,our observations demonstrated that ethyl ferulate possesses great potential as an effective and safe antitumor agent for cancer chemoprevention in humans. 展开更多
关键词 Rubus corchorifolius L.f Ethyl ferulate Bioactive compound Functional food Apoptosis
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不同时期施肥对树莓种植土壤养分的影响 被引量:4
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作者 傅丽 方传龙 《湖北农业科学》 北大核心 2013年第17期4096-4098,4102,共4页
研究了不同时期N、P、K不同配比施用对树莓(Rubus corchorifolius)种植土壤养分的影响。结果表明,施肥可以明显改善树莓种植土壤的全氮、有效磷、有效钾和有机质的含量,可以影响土壤的酸碱度。其中氮肥、磷肥、钾肥施用量分别为60、45、... 研究了不同时期N、P、K不同配比施用对树莓(Rubus corchorifolius)种植土壤养分的影响。结果表明,施肥可以明显改善树莓种植土壤的全氮、有效磷、有效钾和有机质的含量,可以影响土壤的酸碱度。其中氮肥、磷肥、钾肥施用量分别为60、45、75 kg/hm2在树莓生长初期可明显增加土壤全氮、有效磷、有效钾和有机质的含量及土壤pH,在中期、成熟期可明显增加土壤全氮和有效钾的含量;氮肥、磷肥、钾肥施用量分别为40、45、50 kg/hm2在树莓生长中期可明显增加土壤有效磷和有机质含量,在成熟期可明显增加土壤有效磷含量;氮肥、磷肥、钾肥施用量分别为40、30、75 kg/hm2在成熟期可明显增加土壤有机质含量;氮肥、磷肥、钾肥施用量分别为25、19、50 kg/hm2在初期和成熟期可明显降低土壤pH,在中期可明显提高土壤pH。肥料对树莓种植土壤养分的贡献从大到小为磷肥、氮肥、钾肥。 展开更多
关键词 施肥时期 土壤养分 树莓(Rubus corchorifolius)
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