Co-occurrence pattern of fish species plays an important role in understanding the spatio-temporal structure and the stability of fish community.Species coexistence may vary with time and space.The co-occurrence patte...Co-occurrence pattern of fish species plays an important role in understanding the spatio-temporal structure and the stability of fish community.Species coexistence may vary with time and space.The co-occurrence patterns of fish species were examined using the C-score under fixed-fixed null model for fish communities in spring and autumn over different years in the Haizhou Bay,China.The results showed that fish assemblages in the whole bay had non-random patterns in spring and autumn over different years.However,the fish co-occurrence patterns were different for the northern and southern fish assemblages in spring and autumn.The northern fish assemblage showed structured pattern,whereas the southern assemblage were randomly assembled in spring.The co-occurrence patterns of fish communities were relatively stable over different years,and the number of significant species pairs in northern assemblage was more than that in the southern assemblage.Environmental heterogeneity played an important role in determining the distributions of fish species that formed significant species pairs,which might affect the co-occurrence patterns of northern and southern assemblages further in the Haizhou Bay.展开更多
AIM: To develop an automatic tool on screening diabetic retinopathy(DR) from diabetic patients.METHODS: We extracted textures from eye fundus images of each diabetes subject using grey level co-occurrence matrix metho...AIM: To develop an automatic tool on screening diabetic retinopathy(DR) from diabetic patients.METHODS: We extracted textures from eye fundus images of each diabetes subject using grey level co-occurrence matrix method and trained a Bayesian model based on these textures. The receiver operating characteristic(ROC) curve was used to estimate the sensitivity and specificity of the Bayesian model.RESULTS: A total of 1000 eyes fundus images from diabetic patients in which 298 eyes were diagnosed as DR by two ophthalmologists. The Bayesian model was trained using four extracted textures including contrast, entropy, angular second moment and correlation using a training dataset. The Bayesian model achieved a sensitivity of 0.949 and a specificity of 0.928 in the validation dataset. The area under the ROC curve was 0.938, and the 10-fold cross validation method showed that the average accuracy rate is 93.5%.CONCLUSION: Textures extracted by grey level cooccurrence can be useful information for DR diagnosis, and a trained Bayesian model based on these textures can be an effective tool for DR screening among diabetic patients.展开更多
A significant performance boost has been achieved in point cloud semantic segmentation by utilization of the encoder-decoder architecture and novel convolution operations for point clouds.However,co-occurrence relatio...A significant performance boost has been achieved in point cloud semantic segmentation by utilization of the encoder-decoder architecture and novel convolution operations for point clouds.However,co-occurrence relationships within a local region which can directly influence segmentation results are usually ignored by current works.In this paper,we propose a neighborhood co-occurrence matrix(NCM)to model local co-occurrence relationships in a point cloud.We generate target NCM and prediction NCM from semantic labels and a prediction map respectively.Then,Kullback-Leibler(KL)divergence is used to maximize the similarity between the target and prediction NCMs to learn the co-occurrence relationship.Moreover,for large scenes where the NCMs for a sampled point cloud and the whole scene differ greatly,we introduce a reverse form of KL divergence which can better handle the difference to supervise the prediction NCMs.We integrate our method into an existing backbone and conduct comprehensive experiments on three datasets:Semantic3D for outdoor space segmentation,and S3DIS and ScanNet v2 for indoor scene segmentation.Results indicate that our method can significantly improve upon the backbone and outperform many leading competitors.展开更多
The development of fungicides is time-consuming and costly.Introducing a fungicide-likeness assessment strategy at the early screening stage can help reduce development risks and improve the success rate.However,exist...The development of fungicides is time-consuming and costly.Introducing a fungicide-likeness assessment strategy at the early screening stage can help reduce development risks and improve the success rate.However,existing assessment methods are often plagued by low accuracy and poor generalization,while fragment-based design strategies commonly fail to account for synergistic effects between structural units.Therefore,based on a small-scale sample set,this study developed a more efficient global predictive model for fungicidal activity—-named APPf—by integrating multi-scale feature screening methods and machine learning algorithms,which also accounts for synergistic effects among different structural fragments.We utilized three independent external test sets for model validation:External Test Set 1 for general validation,External Test Set 2 for comparison with existing models,and External Test Set 3 for disease-specific fungicide evaluation.On External Test Set 1,the APPf model achieved a precision of 0.6454,a recall of 0.8535,and an F1 score of 0.7350,demonstrating its robust predictive performance.It also exhibited strong enrichment capability for positive samples in External Test Set 2.For External Test Set 3,APPf achieved a prediction accuracy exceeding 80%for each disease,suggesting its promising potential in practical fungicide development.Furthermore,we quantified the contribution of molecular descriptors to the model predictions using SHAP value analysis and identified nHdNH and NssssNp as strong indicative features for predicting fungicidal activity,thereby enhancing the interpretability of the model.APPf has been deployed on a public web server(http://pesticides.cau.edu.cn/APPf),providing a user-friendly online prediction service to support the discovery of novel fungicides.Meanwhile,we employed a molecular fragmentation strategy to analyze the co-occurrence relationships between fragments in fungicides and constructed a network map of fragment co-occurrence associated with fungicidal activity.This study provides both an active fragment library and a global fungicide-likeness assessment tool for AI-based de novo molecular generation aimed at discovering novel fungicidal leads,which is expected to enhance the efficiency of developing new fungicides.展开更多
Understanding the fundamental drivers of large-scale species co-occurrence is a critical issue in ecology and conservation research. Here, we assessed foraging guilds, habitat type and disturbances as drivers of bird ...Understanding the fundamental drivers of large-scale species co-occurrence is a critical issue in ecology and conservation research. Here, we assessed foraging guilds, habitat type and disturbances as drivers of bird species co-occurrence in Ghana's Central Region over six months. Birds were sampled in 120 points across six different habitat types (farmland, forest reserve, urban area, coastal savannah, wetland, and mangrove), using the point-centred count technique. In total, 4060 individuals belonging to 216 species were recorded across all six habitat types. We found that co-occurring species were more similar in their foraging behaviour and habitat association. About 60% of the birds were found to co-occur randomly, 15% co-occurred negatively, and 25% co-occurred positively. Carnivores like the Black Heron (Egretta ardesiaca) and Spur-winged Lapwing (Vanellus spinosus) randomly co-occurred with other guild groups and were dominant in the mangroves and wetlands. Frugivores from forest reserves had only a 25% chance of randomly co-occurring with other birds and about a 60% chance of positively co-occurring with other birds. Our findings suggest that foraging guilds and habitat type are major factors driving bird co-occurrence and community assemblages in this West African suburban region.展开更多
BACKGROUND Synchronous liver metastasis(SLM)is a significant contributor to morbidity in colorectal cancer(CRC).There are no effective predictive device integration algorithms to predict adverse SLM events during the ...BACKGROUND Synchronous liver metastasis(SLM)is a significant contributor to morbidity in colorectal cancer(CRC).There are no effective predictive device integration algorithms to predict adverse SLM events during the diagnosis of CRC.AIM To explore the risk factors for SLM in CRC and construct a visual prediction model based on gray-level co-occurrence matrix(GLCM)features collected from magnetic resonance imaging(MRI).METHODS Our study retrospectively enrolled 392 patients with CRC from Yichang Central People’s Hospital from January 2015 to May 2023.Patients were randomly divided into a training and validation group(3:7).The clinical parameters and GLCM features extracted from MRI were included as candidate variables.The prediction model was constructed using a generalized linear regression model,random forest model(RFM),and artificial neural network model.Receiver operating characteristic curves and decision curves were used to evaluate the prediction model.RESULTS Among the 392 patients,48 had SLM(12.24%).We obtained fourteen GLCM imaging data for variable screening of SLM prediction models.Inverse difference,mean sum,sum entropy,sum variance,sum of squares,energy,and difference variance were listed as candidate variables,and the prediction efficiency(area under the curve)of the subsequent RFM in the training set and internal validation set was 0.917[95%confidence interval(95%CI):0.866-0.968]and 0.09(95%CI:0.858-0.960),respectively.CONCLUSION A predictive model combining GLCM image features with machine learning can predict SLM in CRC.This model can assist clinicians in making timely and personalized clinical decisions.展开更多
Rural domestic sewage treatment is critical for environmental protection.This study defines the spatial pattern of villages from the perspective of rural sewage treatment and develops an integrated decision-making sys...Rural domestic sewage treatment is critical for environmental protection.This study defines the spatial pattern of villages from the perspective of rural sewage treatment and develops an integrated decision-making system to propose a sewage treatment mode and scheme suitable for local conditions.By considering the village spatial layout and terrain factors,a decision tree model of residential density and terrain type was constructed with accuracies of 76.47%and 96.00%,respectively.Combined with binary classification probability unit regression,an appropriate sewage treatment mode for the village was determined with 87.00%accuracy.The Analytic Hierarchy Process(AHP),combined with the Technique for Order Preference(TOPSIS)by Similarity to an Ideal Solution model,formed the basis for optimal treatment process selection under different emission standards.Verification was conducted in 542 villages across three counties of the Inner Mongolia Autonomous Region,focusing on the standard effluent effect(0.3773),low investment cost(0.3196),and high standard effluent effect(0.5115)to determine the best treatment process for the same emission standard under different needs.The annual environmental and carbon emission benefits of sewage treatment in these villages were estimated.This model matches village density,geographic feature,and social development level,and provides scientific support and a theoretical basis for rural sewage treatment decision-making.展开更多
We present a comprehensive description and benchmark evaluation of the global–regional chemical transport model called the Emission and Atmospheric Processes Integrated and Coupled Community(EPICC)model.The framework...We present a comprehensive description and benchmark evaluation of the global–regional chemical transport model called the Emission and Atmospheric Processes Integrated and Coupled Community(EPICC)model.The framework incorporates(1)grid configuration,(2)transport dynamics,(3)chemical mechanisms,(4)aerosol processes,(5)wet/dry deposition parameterizations,and(6)heterogeneous chemistry treatments associated with sulfate,nitrous acid(HONO)chemistry,and aerosol/cloud–photolysis interactions(APIs/CPIs).Openly shared with the atmospheric research community,the model facilitates integration of advanced physicochemical schemes to enhance simulation accuracy.Globally,the model demonstrates realistic representations of ozone(O_(3))and aerosol optical depth.The EPICC model generally demonstrates robust performance in simulating regional concentrations of O_(3) and PM_(2.5)(and its components)in China.It successfully captures vertical profiles of both global and regional O_(3).Notably,the model mitigates frequently reported sulfate underestimations in highly industrialized regions of China.The model accurately captures two regional severe pollution episodes observed in eastern China(January/June 2021).Sensitivity experiments highlight the critical roles of heterogeneous chemical mechanisms associated with sulfate,HONO chemistry,APIs,and CPIs in capturing PM_(2.5) and O_(3) concentrations in China.Improved sulfate mechanisms result in an increase of approximately 32.4%(2.8μg m^(−3))in simulated winter sulfate concentrations when observations exceed 10μg m^(−3).Enhanced HONO elevates winter O_(3) and PM_(2.5) by≤20 and≤10μg m^(−3),respectively.Overall,CPIs dominate over APIs in improving O_(3) and PM_(2.5) simulations across China.Locally,APIs mitigate PM_(2.5) and O_(3) discrepancies in the Sichuan Basin.Seasonal cloud–chemistry coupling explains the weaker impact of PM_(2.5) in summer.展开更多
Model evaluation using benchmark datasets is an important method to measure the capability of large language models(LLMs)in specific domains,and it is mainly used to assess the knowledge and reasoning abilities of LLM...Model evaluation using benchmark datasets is an important method to measure the capability of large language models(LLMs)in specific domains,and it is mainly used to assess the knowledge and reasoning abilities of LLMs.Therefore,in order to better assess the capability of LLMs in the agricultural domain,Agri-Eval was proposed as a benchmark for assessing the knowledge and reasoning ability of LLMs in agriculture.The assessment dataset used in Agri-Eval covered seven major disciplines in the agricultural domain:crop science,horticulture,plant protection,animal husbandry,forest science,aquaculture science,and grass science,and contained a total of 2283 questions.Among domestic general-purpose LLMs,DeepSeek R1 performed best with an accuracy rate of 75.49%.In the realm of international general-purpose LLMs,Gemini 2.0 pro exp 0205 standed out as the top performer,achieving an accuracy rate of 74.28%.As an LLMs in agriculture vertical,Shennong V2.0 outperformed all the LLMs in China,and the answer accuracy rate of agricultural knowledge exceeded that of all the existing general-purpose LLMs.The launch of Agri-Eval helped the LLM developers to comprehensively evaluate the model's capability in the field of agriculture through a variety of tasks and tests to promote the development of the LLMs in the field of agriculture.展开更多
In this paper,we establish and study a single-species logistic model with impulsive age-selective harvesting.First,we prove the ultimate boundedness of the solutions of the system.Then,we obtain conditions for the asy...In this paper,we establish and study a single-species logistic model with impulsive age-selective harvesting.First,we prove the ultimate boundedness of the solutions of the system.Then,we obtain conditions for the asymptotic stability of the trivial solution and the positive periodic solution.Finally,numerical simulations are presented to validate our results.Our results show that age-selective harvesting is more conducive to sustainable population survival than non-age-selective harvesting.展开更多
The proliferation of high-dimensional data and the widespread use of complex models present central challenges in contemporary statistics and data science.Dimension reduction and model checking,as two foundational pil...The proliferation of high-dimensional data and the widespread use of complex models present central challenges in contemporary statistics and data science.Dimension reduction and model checking,as two foundational pillars supporting scientific inference and data-driven decisionmaking,have evolved through the collective wisdom of generations of statisticians.This special issue,titled"Recent Developments in Dimension Reduction and Model Checking for regressions",not only aims to showcase cutting-edge advances in the field but also carries a distinct sense of academic homage to honor the groundbreaking and enduring contributions of Professor Lixing Zhu,a leading scholar whose work has profoundly shaped both areas.展开更多
In their recent paper Pereira et al.(2025)claim that validation is overlooked in mapping and modelling of ecosystem services(ES).They state that“many studies lack critical evaluation of the results and no validation ...In their recent paper Pereira et al.(2025)claim that validation is overlooked in mapping and modelling of ecosystem services(ES).They state that“many studies lack critical evaluation of the results and no validation is provided”and that“the validation step is largely overlooked”.This assertion may have been true several years ago,for example,when Ochoa and Urbina-Cardona(2017)made a similar observation.However,there has been much work on ES model validation over the last decade.展开更多
This paper presents an efficient model reduction technique for linear time-varying systems based on shifted Legendre polynomials.The approach constructs approximate low-rank decomposition factors of finite-time Gramia...This paper presents an efficient model reduction technique for linear time-varying systems based on shifted Legendre polynomials.The approach constructs approximate low-rank decomposition factors of finite-time Gramians directly from the expansion coefficients of impulse responses.Leveraging these factors,we develop two model reduction algorithms that integrate the low-rank square root method with dominant subspace projection.Our method is computationally efficient and flexible,requiring only a few matrix-vector operations and a singular value decomposition of a low-dimensional matrix,thereby avoiding the need to solve differential Lyapunov equations.Numerical experiments confirm the effectiveness of the proposed approach.展开更多
In recent years,there has been an increasing need for climate information across diverse sectors of society.This demand has arisen from the necessity to adapt to and mitigate the impacts of climate variability and cha...In recent years,there has been an increasing need for climate information across diverse sectors of society.This demand has arisen from the necessity to adapt to and mitigate the impacts of climate variability and change.Likewise,this period has seen a significant increase in our understanding of the physical processes and mechanisms that drive precipitation and its variability across different regions of Africa.By leveraging a large volume of climate model outputs,numerous studies have investigated the model representation of African precipitation as well as underlying physical processes.These studies have assessed whether the physical processes are well depicted and whether the models are fit for informing mitigation and adaptation strategies.This paper provides a review of the progress in precipitation simulation overAfrica in state-of-the-science climate models and discusses the major issues and challenges that remain.展开更多
Background:Large language models(LLMs)have shown considerable promise in supporting clinical decision-making.However,their adoption and evaluation in dermatology remains limited.This study aimed to explore the prefere...Background:Large language models(LLMs)have shown considerable promise in supporting clinical decision-making.However,their adoption and evaluation in dermatology remains limited.This study aimed to explore the preferences of Chinese dermatologists regarding LLM-generated responses in clinical psoriasis scenarios and to assess how they prioritize key quality dimensions,including accuracy,traceability,and logicality.Methods:A cross-sectional,web-based survey was conducted between December 25,2024,and January 22,2025,following the Checklist for Reporting Results of Internet E-Surveys guidelines.A total of 1247 valid responses were collected from practicing dermatologists across 33 of China's provincial-level administrative divisions.Participants evaluated responses to five categories of clinical questions(etiology,clinical presentation,differential diagnosis,treatment,and case study)generated by five LLMs:ChatGPT-4o,Kimi.ai,Doubao,ZuoYiGPT,and Lingyi-agent.Statistical associations between participant characteristics and model preferences were examined using chi-square tests.Results:ChatGPT-4o(Model 1)emerged as the most preferred model across all clinical tasks,consistently receiving the highest number of votes in case study(n=740),clinical presentation(n=666),differential diagnosis(n=707),etiology(n=602),and treatment(n=656).Significant variation in model preference by professional title was observed only for the differential diagnosis task(χ^(2)=21.13,df=12,p=0.0485),while no significant differences were found across hospital tiers(p>0.05).In terms of evaluation dimensions,accuracy was most frequently rated as“very important”(n=635).A significant association existed between hospital tier and the most valued dimension(χ^(2)=27.667,df=9,p=0.0011),with dermatologists in primary hospitals prioritizing traceability more than their peers in higher-tier hospitals.No significant associations were found across professional titles(p=0.127).Conclusions:Chinese dermatologists suggest a strong preference for ChatGPT-4o over domestic LLMs in psoriasis-related clinical tasks.While accuracy remains the primary criterion,traceability and logicality are also critical,particularly for clinicians in lower-tier hospitals.These findings suggest that future clinical LLMs should prioritize not only content accuracy but also source transparency and structural clarity to meet the diverse needs of different clinical settings.展开更多
The dissolution of MgO-refractory into the slag had an obvious influence on the steel-slag reaction and the slag property,especially for high-aluminum steels.The dissolution behavior of MgO-refractory was investigated...The dissolution of MgO-refractory into the slag had an obvious influence on the steel-slag reaction and the slag property,especially for high-aluminum steels.The dissolution behavior of MgO-refractory was investigated under various conditions,including the temperature,the initial steel composition,and the initial slag composition.A steel-slag-refractory kinetic model for high-aluminum steel was developed,which incorporated the process of MgO-refractory dissolution.The dependence of the MgO mass transfer coefficient k_(MgO)^(r)on temperature T during MgO-refractory dissolution process was established,as described by ln k_(MgO)^(r)=63,754/T+24.38524.It was indicated that the MgO dissolution rate was significantly influenced by the temperature.A higher temperature increased the dissolution rate of MgO.The initial steel composition had a slight impact on the MgO dissolution rate.Additionally,the initial slag composition strongly impacted the MgO saturation concentration and the dissolution rate.A lower initial Al_(2)O_(3)/SiO_(2)ratio increased the MgO dissolution rate.The steel-slag-refractory kinetic model accurately predicted the dissolution of MgO-refractory and the influence of dissolved MgO on the viscosity and composition change during steel-slag-refractory reactions.It was suggested that a higher temperature can hardly reduce the viscosity due to the dissolution of the MgO-refractory.展开更多
The Reynolds-averaged Navier-Stokes(RANS)technique enables critical engineering predictions and is widely adopted.However,since this iterative computation relies on the fixed-point iteration,it may converge to unexpec...The Reynolds-averaged Navier-Stokes(RANS)technique enables critical engineering predictions and is widely adopted.However,since this iterative computation relies on the fixed-point iteration,it may converge to unexpected non-physical phase points in practice.We conduct an analysis on the phase-space characteristics and the fixed-point theory underlying the k-ε turbulence model,and employ the classical Kolmogorov flow as a framework,leveraging its direct numerical simulation(DNS)data to construct a one-dimensional(1D)system under periodic/fixed boundary conditions.The RANS results demonstrate that under periodic boundary conditions,the k-ε model exhibits only a unique trivial fixed point,with asymptotes capturing the phase portraits.The stability of this trivial fixed point is determined by a mathematically derived stability phase diagram,indicating the fact that the k-ε model will never converge to correct values under periodic conditions.In contrast,under fixed boundary conditions,the model can yield a stable non-trivial fixed point.The evolutionary mechanisms and their relationship with boundary condition settings systematically explain the inherent limitations of the k-ε model,i.e.,its deficiency in computing the flow field under periodic boundary conditions and sensitivity to boundary-value specifications under fixed boundary conditions.These conclusions are finally validated with the open-source code OpenFOAM.展开更多
Utilizing finite element analysis,the ballistic protection provided by a combination of perforated D-shaped and base armor plates,collectively referred to as radiator armor,is evaluated.ANSYS Explicit Dynamics is empl...Utilizing finite element analysis,the ballistic protection provided by a combination of perforated D-shaped and base armor plates,collectively referred to as radiator armor,is evaluated.ANSYS Explicit Dynamics is employed to simulate the ballistic impact of 7.62 mm armor-piercing projectiles on Aluminum AA5083-H116 and Steel Secure 500 armors,focusing on the evaluation of material deformation and penetration resistance at varying impact points.While the D-shaped armor plate is penetrated by the armor-piercing projectiles,the combination of the perforated D-shaped and base armor plates successfully halts penetration.A numerical model based on the finite element method is developed using software such as SolidWorks and ANSYS to analyze the interaction between radiator armor and bullet.The perforated design of radiator armor is to maintain airflow for radiator function,with hole sizes smaller than the bullet core diameter to protect radiator assemblies.Predictions are made regarding the brittle fracture resulting from the projectile core′s bending due to asymmetric impact,and the resulting fragments failed to penetrate the perforated base armor plate.Craters are formed on the surface of the perforated D-shaped armor plate due to the impact of projectile fragments.The numerical model accurately predicts hole growth and projectile penetration upon impact with the armor,demonstrating effective protection of the radiator assemblies by the radiator armor.展开更多
In materials science and engineering design,high-fidelity and high-efficiency numerical simulation has become a driving force for innovation and practical implementation.To address longstanding bottlenecks in the deve...In materials science and engineering design,high-fidelity and high-efficiency numerical simulation has become a driving force for innovation and practical implementation.To address longstanding bottlenecks in the development of conventional material constitutive models—such as lengthy modeling cycles and difficulties in numerical implementation—this study proposes an intelligent modeling and code generation approach powered by large languagemodels.A structured knowledge base integrating constitutive theory,numerical algorithms,and UMAT(User Material)interface specifications is constructed,and a retrieval-augmented generation strategy is employed to establish an end-to-end workflow spanning experimental data parsing,constitutive model formulation,and automatic UMAT subroutine generation.Experimental results show that the method achieves high accuracy for both a classical Johnson–Cookmodel and a physics-informed neural network(PINN)model,with key parameter identification errors below 5%.Moreover,the automatically generated UMAT subroutines yield finite element simulation results in Abaqus that are highly consistent with theoretical predictions(coefficient of determination R2>0.98)while maintaining good numerical stability.This framework is currently focused on the automatic construction of rate-dependent elastoplastic material models,and its core method also provides a clear path for extending to other constitutive categories such as hyperelasticity and viscoelasticity.This work provides an effective technical route for the rapid development and reliable numerical implementation of material constitutive models,significantly advancing the intelligence level of computational mechanics research and improving engineering application efficiency.展开更多
Coordinate transformation models often fail to account for nonlinear and spatially dependent distortions,leading to significant residual errors in geospatial applications.Here,we propose a residual-based neural correc...Coordinate transformation models often fail to account for nonlinear and spatially dependent distortions,leading to significant residual errors in geospatial applications.Here,we propose a residual-based neural correction(RBNC)strategy,in which a neural network learns to model only the systematic distortions left by an initial geometric transformation.By focusing solely on residual patterns,RBNC reduces model complexity and improves performance,particularly in scenarios with sparse or structured control point configurations.We evaluate the method using both simulated datasets(with varying distortion intensities and sampling strategies)and real-world image georeferencing tasks.Compared with direct neural network coordinate converters and classical transformation models,RBNC delivers more accurate and stable results under challenging conditions,while maintaining comparable performance in ideal cases.These findings demonstrate the effectiveness of residual modelling as a light-weight and robust alternative for improving coordinate transformation accuracy.展开更多
基金funded by the National Natural Science Foundation of China (No. 31772852)the Fundamental Research Funds for the Central Universities (Nos. 2015 62030, 201612004)the Public Science and Technology Research Funds Projects of Ocean (No. 201305030)
文摘Co-occurrence pattern of fish species plays an important role in understanding the spatio-temporal structure and the stability of fish community.Species coexistence may vary with time and space.The co-occurrence patterns of fish species were examined using the C-score under fixed-fixed null model for fish communities in spring and autumn over different years in the Haizhou Bay,China.The results showed that fish assemblages in the whole bay had non-random patterns in spring and autumn over different years.However,the fish co-occurrence patterns were different for the northern and southern fish assemblages in spring and autumn.The northern fish assemblage showed structured pattern,whereas the southern assemblage were randomly assembled in spring.The co-occurrence patterns of fish communities were relatively stable over different years,and the number of significant species pairs in northern assemblage was more than that in the southern assemblage.Environmental heterogeneity played an important role in determining the distributions of fish species that formed significant species pairs,which might affect the co-occurrence patterns of northern and southern assemblages further in the Haizhou Bay.
基金Supported by the Priming Scientific Research Foundation for the Junior Researcher in Beijing Tongren Hospital,Capital Medical University
文摘AIM: To develop an automatic tool on screening diabetic retinopathy(DR) from diabetic patients.METHODS: We extracted textures from eye fundus images of each diabetes subject using grey level co-occurrence matrix method and trained a Bayesian model based on these textures. The receiver operating characteristic(ROC) curve was used to estimate the sensitivity and specificity of the Bayesian model.RESULTS: A total of 1000 eyes fundus images from diabetic patients in which 298 eyes were diagnosed as DR by two ophthalmologists. The Bayesian model was trained using four extracted textures including contrast, entropy, angular second moment and correlation using a training dataset. The Bayesian model achieved a sensitivity of 0.949 and a specificity of 0.928 in the validation dataset. The area under the ROC curve was 0.938, and the 10-fold cross validation method showed that the average accuracy rate is 93.5%.CONCLUSION: Textures extracted by grey level cooccurrence can be useful information for DR diagnosis, and a trained Bayesian model based on these textures can be an effective tool for DR screening among diabetic patients.
基金support of the National Natural Science Foundation of China(61972157)the Natural Science Foundation of Shanghai(20ZR1417700)+2 种基金the National Key R&D Program of China(2019YFC1521104,2020AAA0108301)Shanghai Municipal Commission of Economy and Information(XX-RGZN-01-19-6348)the Art Major Project of National Social Science Fund(I8ZD22).
文摘A significant performance boost has been achieved in point cloud semantic segmentation by utilization of the encoder-decoder architecture and novel convolution operations for point clouds.However,co-occurrence relationships within a local region which can directly influence segmentation results are usually ignored by current works.In this paper,we propose a neighborhood co-occurrence matrix(NCM)to model local co-occurrence relationships in a point cloud.We generate target NCM and prediction NCM from semantic labels and a prediction map respectively.Then,Kullback-Leibler(KL)divergence is used to maximize the similarity between the target and prediction NCMs to learn the co-occurrence relationship.Moreover,for large scenes where the NCMs for a sampled point cloud and the whole scene differ greatly,we introduce a reverse form of KL divergence which can better handle the difference to supervise the prediction NCMs.We integrate our method into an existing backbone and conduct comprehensive experiments on three datasets:Semantic3D for outdoor space segmentation,and S3DIS and ScanNet v2 for indoor scene segmentation.Results indicate that our method can significantly improve upon the backbone and outperform many leading competitors.
基金the National Key R&D Program of China(No.2022YFD1700200).
文摘The development of fungicides is time-consuming and costly.Introducing a fungicide-likeness assessment strategy at the early screening stage can help reduce development risks and improve the success rate.However,existing assessment methods are often plagued by low accuracy and poor generalization,while fragment-based design strategies commonly fail to account for synergistic effects between structural units.Therefore,based on a small-scale sample set,this study developed a more efficient global predictive model for fungicidal activity—-named APPf—by integrating multi-scale feature screening methods and machine learning algorithms,which also accounts for synergistic effects among different structural fragments.We utilized three independent external test sets for model validation:External Test Set 1 for general validation,External Test Set 2 for comparison with existing models,and External Test Set 3 for disease-specific fungicide evaluation.On External Test Set 1,the APPf model achieved a precision of 0.6454,a recall of 0.8535,and an F1 score of 0.7350,demonstrating its robust predictive performance.It also exhibited strong enrichment capability for positive samples in External Test Set 2.For External Test Set 3,APPf achieved a prediction accuracy exceeding 80%for each disease,suggesting its promising potential in practical fungicide development.Furthermore,we quantified the contribution of molecular descriptors to the model predictions using SHAP value analysis and identified nHdNH and NssssNp as strong indicative features for predicting fungicidal activity,thereby enhancing the interpretability of the model.APPf has been deployed on a public web server(http://pesticides.cau.edu.cn/APPf),providing a user-friendly online prediction service to support the discovery of novel fungicides.Meanwhile,we employed a molecular fragmentation strategy to analyze the co-occurrence relationships between fragments in fungicides and constructed a network map of fragment co-occurrence associated with fungicidal activity.This study provides both an active fragment library and a global fungicide-likeness assessment tool for AI-based de novo molecular generation aimed at discovering novel fungicidal leads,which is expected to enhance the efficiency of developing new fungicides.
文摘Understanding the fundamental drivers of large-scale species co-occurrence is a critical issue in ecology and conservation research. Here, we assessed foraging guilds, habitat type and disturbances as drivers of bird species co-occurrence in Ghana's Central Region over six months. Birds were sampled in 120 points across six different habitat types (farmland, forest reserve, urban area, coastal savannah, wetland, and mangrove), using the point-centred count technique. In total, 4060 individuals belonging to 216 species were recorded across all six habitat types. We found that co-occurring species were more similar in their foraging behaviour and habitat association. About 60% of the birds were found to co-occur randomly, 15% co-occurred negatively, and 25% co-occurred positively. Carnivores like the Black Heron (Egretta ardesiaca) and Spur-winged Lapwing (Vanellus spinosus) randomly co-occurred with other guild groups and were dominant in the mangroves and wetlands. Frugivores from forest reserves had only a 25% chance of randomly co-occurring with other birds and about a 60% chance of positively co-occurring with other birds. Our findings suggest that foraging guilds and habitat type are major factors driving bird co-occurrence and community assemblages in this West African suburban region.
文摘BACKGROUND Synchronous liver metastasis(SLM)is a significant contributor to morbidity in colorectal cancer(CRC).There are no effective predictive device integration algorithms to predict adverse SLM events during the diagnosis of CRC.AIM To explore the risk factors for SLM in CRC and construct a visual prediction model based on gray-level co-occurrence matrix(GLCM)features collected from magnetic resonance imaging(MRI).METHODS Our study retrospectively enrolled 392 patients with CRC from Yichang Central People’s Hospital from January 2015 to May 2023.Patients were randomly divided into a training and validation group(3:7).The clinical parameters and GLCM features extracted from MRI were included as candidate variables.The prediction model was constructed using a generalized linear regression model,random forest model(RFM),and artificial neural network model.Receiver operating characteristic curves and decision curves were used to evaluate the prediction model.RESULTS Among the 392 patients,48 had SLM(12.24%).We obtained fourteen GLCM imaging data for variable screening of SLM prediction models.Inverse difference,mean sum,sum entropy,sum variance,sum of squares,energy,and difference variance were listed as candidate variables,and the prediction efficiency(area under the curve)of the subsequent RFM in the training set and internal validation set was 0.917[95%confidence interval(95%CI):0.866-0.968]and 0.09(95%CI:0.858-0.960),respectively.CONCLUSION A predictive model combining GLCM image features with machine learning can predict SLM in CRC.This model can assist clinicians in making timely and personalized clinical decisions.
基金supported by the Central Government Guiding Local Science and Technology Development Fund Project(No.2024SZY0343)the Joint Research Program for Ecological Conservation and High Quality Development of the Yellow River Basin(No.2022-YRUC-01-050205)+2 种基金the Higher Education Scientific Research Project of Inner Mongolia Autonomous Region(No.NJZZ23078)the project of Inner Mongolia"Prairie Talents"Engineering Innovation Entrepreneurship Talent Team,the Major Projects of Erdos Science and Technology(No.2022EEDSKJZDZX015)the Innovation Team of the Inner Mongolia Academy of Science and Technology(No.CXTD2023-01-016).
文摘Rural domestic sewage treatment is critical for environmental protection.This study defines the spatial pattern of villages from the perspective of rural sewage treatment and develops an integrated decision-making system to propose a sewage treatment mode and scheme suitable for local conditions.By considering the village spatial layout and terrain factors,a decision tree model of residential density and terrain type was constructed with accuracies of 76.47%and 96.00%,respectively.Combined with binary classification probability unit regression,an appropriate sewage treatment mode for the village was determined with 87.00%accuracy.The Analytic Hierarchy Process(AHP),combined with the Technique for Order Preference(TOPSIS)by Similarity to an Ideal Solution model,formed the basis for optimal treatment process selection under different emission standards.Verification was conducted in 542 villages across three counties of the Inner Mongolia Autonomous Region,focusing on the standard effluent effect(0.3773),low investment cost(0.3196),and high standard effluent effect(0.5115)to determine the best treatment process for the same emission standard under different needs.The annual environmental and carbon emission benefits of sewage treatment in these villages were estimated.This model matches village density,geographic feature,and social development level,and provides scientific support and a theoretical basis for rural sewage treatment decision-making.
基金National Key Scientific and Technological Infrastructure project “Earth System Science Numerical Simulator Facility” (EarthLab)supported by the National Natural Science Foundation of China (Grant No. 92044302)the National Key Research Development Program of China (Grant No. 2022YFC3700703)
文摘We present a comprehensive description and benchmark evaluation of the global–regional chemical transport model called the Emission and Atmospheric Processes Integrated and Coupled Community(EPICC)model.The framework incorporates(1)grid configuration,(2)transport dynamics,(3)chemical mechanisms,(4)aerosol processes,(5)wet/dry deposition parameterizations,and(6)heterogeneous chemistry treatments associated with sulfate,nitrous acid(HONO)chemistry,and aerosol/cloud–photolysis interactions(APIs/CPIs).Openly shared with the atmospheric research community,the model facilitates integration of advanced physicochemical schemes to enhance simulation accuracy.Globally,the model demonstrates realistic representations of ozone(O_(3))and aerosol optical depth.The EPICC model generally demonstrates robust performance in simulating regional concentrations of O_(3) and PM_(2.5)(and its components)in China.It successfully captures vertical profiles of both global and regional O_(3).Notably,the model mitigates frequently reported sulfate underestimations in highly industrialized regions of China.The model accurately captures two regional severe pollution episodes observed in eastern China(January/June 2021).Sensitivity experiments highlight the critical roles of heterogeneous chemical mechanisms associated with sulfate,HONO chemistry,APIs,and CPIs in capturing PM_(2.5) and O_(3) concentrations in China.Improved sulfate mechanisms result in an increase of approximately 32.4%(2.8μg m^(−3))in simulated winter sulfate concentrations when observations exceed 10μg m^(−3).Enhanced HONO elevates winter O_(3) and PM_(2.5) by≤20 and≤10μg m^(−3),respectively.Overall,CPIs dominate over APIs in improving O_(3) and PM_(2.5) simulations across China.Locally,APIs mitigate PM_(2.5) and O_(3) discrepancies in the Sichuan Basin.Seasonal cloud–chemistry coupling explains the weaker impact of PM_(2.5) in summer.
文摘Model evaluation using benchmark datasets is an important method to measure the capability of large language models(LLMs)in specific domains,and it is mainly used to assess the knowledge and reasoning abilities of LLMs.Therefore,in order to better assess the capability of LLMs in the agricultural domain,Agri-Eval was proposed as a benchmark for assessing the knowledge and reasoning ability of LLMs in agriculture.The assessment dataset used in Agri-Eval covered seven major disciplines in the agricultural domain:crop science,horticulture,plant protection,animal husbandry,forest science,aquaculture science,and grass science,and contained a total of 2283 questions.Among domestic general-purpose LLMs,DeepSeek R1 performed best with an accuracy rate of 75.49%.In the realm of international general-purpose LLMs,Gemini 2.0 pro exp 0205 standed out as the top performer,achieving an accuracy rate of 74.28%.As an LLMs in agriculture vertical,Shennong V2.0 outperformed all the LLMs in China,and the answer accuracy rate of agricultural knowledge exceeded that of all the existing general-purpose LLMs.The launch of Agri-Eval helped the LLM developers to comprehensively evaluate the model's capability in the field of agriculture through a variety of tasks and tests to promote the development of the LLMs in the field of agriculture.
基金Supported by the National Natural Science Foundation of China(12261018)Universities Key Laboratory of Mathematical Modeling and Data Mining in Guizhou Province(2023013)。
文摘In this paper,we establish and study a single-species logistic model with impulsive age-selective harvesting.First,we prove the ultimate boundedness of the solutions of the system.Then,we obtain conditions for the asymptotic stability of the trivial solution and the positive periodic solution.Finally,numerical simulations are presented to validate our results.Our results show that age-selective harvesting is more conducive to sustainable population survival than non-age-selective harvesting.
文摘The proliferation of high-dimensional data and the widespread use of complex models present central challenges in contemporary statistics and data science.Dimension reduction and model checking,as two foundational pillars supporting scientific inference and data-driven decisionmaking,have evolved through the collective wisdom of generations of statisticians.This special issue,titled"Recent Developments in Dimension Reduction and Model Checking for regressions",not only aims to showcase cutting-edge advances in the field but also carries a distinct sense of academic homage to honor the groundbreaking and enduring contributions of Professor Lixing Zhu,a leading scholar whose work has profoundly shaped both areas.
文摘In their recent paper Pereira et al.(2025)claim that validation is overlooked in mapping and modelling of ecosystem services(ES).They state that“many studies lack critical evaluation of the results and no validation is provided”and that“the validation step is largely overlooked”.This assertion may have been true several years ago,for example,when Ochoa and Urbina-Cardona(2017)made a similar observation.However,there has been much work on ES model validation over the last decade.
文摘This paper presents an efficient model reduction technique for linear time-varying systems based on shifted Legendre polynomials.The approach constructs approximate low-rank decomposition factors of finite-time Gramians directly from the expansion coefficients of impulse responses.Leveraging these factors,we develop two model reduction algorithms that integrate the low-rank square root method with dominant subspace projection.Our method is computationally efficient and flexible,requiring only a few matrix-vector operations and a singular value decomposition of a low-dimensional matrix,thereby avoiding the need to solve differential Lyapunov equations.Numerical experiments confirm the effectiveness of the proposed approach.
基金the World Climate Research Programme(WCRP),Climate Variability and Predictability(CLIVAR),and Global Energy and Water Exchanges(GEWEX)for facilitating the coordination of African monsoon researchsupport from the Center for Earth System Modeling,Analysis,and Data at the Pennsylvania State Universitythe support of the Office of Science of the U.S.Department of Energy Biological and Environmental Research as part of the Regional&Global Model Analysis(RGMA)program area。
文摘In recent years,there has been an increasing need for climate information across diverse sectors of society.This demand has arisen from the necessity to adapt to and mitigate the impacts of climate variability and change.Likewise,this period has seen a significant increase in our understanding of the physical processes and mechanisms that drive precipitation and its variability across different regions of Africa.By leveraging a large volume of climate model outputs,numerous studies have investigated the model representation of African precipitation as well as underlying physical processes.These studies have assessed whether the physical processes are well depicted and whether the models are fit for informing mitigation and adaptation strategies.This paper provides a review of the progress in precipitation simulation overAfrica in state-of-the-science climate models and discusses the major issues and challenges that remain.
基金National Key Research and Development Program of China,Grant/Award Number:2024YFF0507404Special Clinical Business Fund for High-Level Hospitals of China-Japan Friendship Hospital,Grant/Award Number:2024-NHLHCRF-TS-01。
文摘Background:Large language models(LLMs)have shown considerable promise in supporting clinical decision-making.However,their adoption and evaluation in dermatology remains limited.This study aimed to explore the preferences of Chinese dermatologists regarding LLM-generated responses in clinical psoriasis scenarios and to assess how they prioritize key quality dimensions,including accuracy,traceability,and logicality.Methods:A cross-sectional,web-based survey was conducted between December 25,2024,and January 22,2025,following the Checklist for Reporting Results of Internet E-Surveys guidelines.A total of 1247 valid responses were collected from practicing dermatologists across 33 of China's provincial-level administrative divisions.Participants evaluated responses to five categories of clinical questions(etiology,clinical presentation,differential diagnosis,treatment,and case study)generated by five LLMs:ChatGPT-4o,Kimi.ai,Doubao,ZuoYiGPT,and Lingyi-agent.Statistical associations between participant characteristics and model preferences were examined using chi-square tests.Results:ChatGPT-4o(Model 1)emerged as the most preferred model across all clinical tasks,consistently receiving the highest number of votes in case study(n=740),clinical presentation(n=666),differential diagnosis(n=707),etiology(n=602),and treatment(n=656).Significant variation in model preference by professional title was observed only for the differential diagnosis task(χ^(2)=21.13,df=12,p=0.0485),while no significant differences were found across hospital tiers(p>0.05).In terms of evaluation dimensions,accuracy was most frequently rated as“very important”(n=635).A significant association existed between hospital tier and the most valued dimension(χ^(2)=27.667,df=9,p=0.0011),with dermatologists in primary hospitals prioritizing traceability more than their peers in higher-tier hospitals.No significant associations were found across professional titles(p=0.127).Conclusions:Chinese dermatologists suggest a strong preference for ChatGPT-4o over domestic LLMs in psoriasis-related clinical tasks.While accuracy remains the primary criterion,traceability and logicality are also critical,particularly for clinicians in lower-tier hospitals.These findings suggest that future clinical LLMs should prioritize not only content accuracy but also source transparency and structural clarity to meet the diverse needs of different clinical settings.
基金support from the National Key R&D Program of China(Grant No.2023YFB3709901)the National Natural Science Foundation of China(Grant No.U22A20171)+1 种基金China Baowu Low Carbon Metallurgy Innovation Foundation(Grant No.BWLCF202315)the High Steel Center(HSC)at North China University of Technology and University of Science and Technology Beijing,China.
文摘The dissolution of MgO-refractory into the slag had an obvious influence on the steel-slag reaction and the slag property,especially for high-aluminum steels.The dissolution behavior of MgO-refractory was investigated under various conditions,including the temperature,the initial steel composition,and the initial slag composition.A steel-slag-refractory kinetic model for high-aluminum steel was developed,which incorporated the process of MgO-refractory dissolution.The dependence of the MgO mass transfer coefficient k_(MgO)^(r)on temperature T during MgO-refractory dissolution process was established,as described by ln k_(MgO)^(r)=63,754/T+24.38524.It was indicated that the MgO dissolution rate was significantly influenced by the temperature.A higher temperature increased the dissolution rate of MgO.The initial steel composition had a slight impact on the MgO dissolution rate.Additionally,the initial slag composition strongly impacted the MgO saturation concentration and the dissolution rate.A lower initial Al_(2)O_(3)/SiO_(2)ratio increased the MgO dissolution rate.The steel-slag-refractory kinetic model accurately predicted the dissolution of MgO-refractory and the influence of dissolved MgO on the viscosity and composition change during steel-slag-refractory reactions.It was suggested that a higher temperature can hardly reduce the viscosity due to the dissolution of the MgO-refractory.
基金Project supported by the National Natural Science Foundation of China(Nos.12372214 and U2341231)。
文摘The Reynolds-averaged Navier-Stokes(RANS)technique enables critical engineering predictions and is widely adopted.However,since this iterative computation relies on the fixed-point iteration,it may converge to unexpected non-physical phase points in practice.We conduct an analysis on the phase-space characteristics and the fixed-point theory underlying the k-ε turbulence model,and employ the classical Kolmogorov flow as a framework,leveraging its direct numerical simulation(DNS)data to construct a one-dimensional(1D)system under periodic/fixed boundary conditions.The RANS results demonstrate that under periodic boundary conditions,the k-ε model exhibits only a unique trivial fixed point,with asymptotes capturing the phase portraits.The stability of this trivial fixed point is determined by a mathematically derived stability phase diagram,indicating the fact that the k-ε model will never converge to correct values under periodic conditions.In contrast,under fixed boundary conditions,the model can yield a stable non-trivial fixed point.The evolutionary mechanisms and their relationship with boundary condition settings systematically explain the inherent limitations of the k-ε model,i.e.,its deficiency in computing the flow field under periodic boundary conditions and sensitivity to boundary-value specifications under fixed boundary conditions.These conclusions are finally validated with the open-source code OpenFOAM.
文摘Utilizing finite element analysis,the ballistic protection provided by a combination of perforated D-shaped and base armor plates,collectively referred to as radiator armor,is evaluated.ANSYS Explicit Dynamics is employed to simulate the ballistic impact of 7.62 mm armor-piercing projectiles on Aluminum AA5083-H116 and Steel Secure 500 armors,focusing on the evaluation of material deformation and penetration resistance at varying impact points.While the D-shaped armor plate is penetrated by the armor-piercing projectiles,the combination of the perforated D-shaped and base armor plates successfully halts penetration.A numerical model based on the finite element method is developed using software such as SolidWorks and ANSYS to analyze the interaction between radiator armor and bullet.The perforated design of radiator armor is to maintain airflow for radiator function,with hole sizes smaller than the bullet core diameter to protect radiator assemblies.Predictions are made regarding the brittle fracture resulting from the projectile core′s bending due to asymmetric impact,and the resulting fragments failed to penetrate the perforated base armor plate.Craters are formed on the surface of the perforated D-shaped armor plate due to the impact of projectile fragments.The numerical model accurately predicts hole growth and projectile penetration upon impact with the armor,demonstrating effective protection of the radiator assemblies by the radiator armor.
基金funded by the National Natural Science Foundation of China,grant number 52405341Foundation of National Key Laboratory of Computational Physics,grant number 6142A05QN24012+1 种基金Chongqing Science and Technology Committee,grant number CSTB2023NSCQ-MSX0363The Science and Technology Research Program of Chongqing Municipal Education Commission,grant number KJQN202301117.
文摘In materials science and engineering design,high-fidelity and high-efficiency numerical simulation has become a driving force for innovation and practical implementation.To address longstanding bottlenecks in the development of conventional material constitutive models—such as lengthy modeling cycles and difficulties in numerical implementation—this study proposes an intelligent modeling and code generation approach powered by large languagemodels.A structured knowledge base integrating constitutive theory,numerical algorithms,and UMAT(User Material)interface specifications is constructed,and a retrieval-augmented generation strategy is employed to establish an end-to-end workflow spanning experimental data parsing,constitutive model formulation,and automatic UMAT subroutine generation.Experimental results show that the method achieves high accuracy for both a classical Johnson–Cookmodel and a physics-informed neural network(PINN)model,with key parameter identification errors below 5%.Moreover,the automatically generated UMAT subroutines yield finite element simulation results in Abaqus that are highly consistent with theoretical predictions(coefficient of determination R2>0.98)while maintaining good numerical stability.This framework is currently focused on the automatic construction of rate-dependent elastoplastic material models,and its core method also provides a clear path for extending to other constitutive categories such as hyperelasticity and viscoelasticity.This work provides an effective technical route for the rapid development and reliable numerical implementation of material constitutive models,significantly advancing the intelligence level of computational mechanics research and improving engineering application efficiency.
基金National Council for Scientific and Technological Development,Grant No.421278/2023-4,No.309248/2025-6。
文摘Coordinate transformation models often fail to account for nonlinear and spatially dependent distortions,leading to significant residual errors in geospatial applications.Here,we propose a residual-based neural correction(RBNC)strategy,in which a neural network learns to model only the systematic distortions left by an initial geometric transformation.By focusing solely on residual patterns,RBNC reduces model complexity and improves performance,particularly in scenarios with sparse or structured control point configurations.We evaluate the method using both simulated datasets(with varying distortion intensities and sampling strategies)and real-world image georeferencing tasks.Compared with direct neural network coordinate converters and classical transformation models,RBNC delivers more accurate and stable results under challenging conditions,while maintaining comparable performance in ideal cases.These findings demonstrate the effectiveness of residual modelling as a light-weight and robust alternative for improving coordinate transformation accuracy.
