Exosomal miRNAs,as potential biomarkers in liquid biopsy for cancer early diagnosis,have aroused widespread concern.Herein,an electrochemical biosensor based on DNA“nano-bridge”was designed and applied to detect exo...Exosomal miRNAs,as potential biomarkers in liquid biopsy for cancer early diagnosis,have aroused widespread concern.Herein,an electrochemical biosensor based on DNA“nano-bridge”was designed and applied to detect exosomal microRNA-21(miR-21)derived from breast cancer cells.In brief,the target miR-21 can specifically open the hairpin probe 1(HP1)labeled on the gold electrode(GE)surface through strand displacement reaction.Thus the exposed loop region of HP1 can act as an initiator sequence to activate the hybridization chain reaction(HCR)between two kinetically trapped hairpin probes:HP2 immobilized on the GE surface and biotin labeled HP3 in solution.Cascade HCR leads to the formation of DNA“nano-bridge”tethered to the GE surface with a great deal of“piers”.Upon addition of avidin-modified horseradish peroxidase(HRP),numerous HRP were bound to the formed“nano-bridge”through biotin-avidin interaction to arouse tremendous current signal.In theory,only a single miR-21 is able to trigger the continuous HCR between HP2 and HP3 until all of the HP2 are exhausted.Therefore the proposed biosensor achieved ultrahigh sensitivity toward miR-21 with the detection limit down to 168 amol/L,as well as little cross-hybridization even at the single-base-mismatched level.Successful attempts were also made in the detection of exosomal miR-21 obtained from the MCF-7 of breast cancer cell line.To our knowledge,this is the first attempt to built horizontal DNA nano-structure on the electrode surface for exosomal miRNAs detection.In a word,the high sensitivity,selectivity,low cost make the proposed method hold great potential application for early point-of-care(POC)diagnostics of cancer.展开更多
A microelectrode glucose biosensor based on a three-dimensional hybrid nanoporous platinum/graphene oxide nanostructure was developed for rapid glucose detection of tomato and cucumber fruits.The nanostructure was fab...A microelectrode glucose biosensor based on a three-dimensional hybrid nanoporous platinum/graphene oxide nanostructure was developed for rapid glucose detection of tomato and cucumber fruits.The nanostructure was fabricated by a two-step modification method on a microelectrode for loading a larger amount of glucose oxidase.The nanoporous structure was prepared on the surface of the platinum microelectrode by electrochemical etching,and then graphene oxide was deposited on the prepared nanoporous electrode by electrochemical deposition.The nanoporous platinum/graphene oxide nanostructure had the advantage of improving the effective surface area of the electrode and the loading quantity of glucose oxidase.As a result,the biosensor achieved a wide range of 0.1-20.0 mmol/L in glucose detection,which had the ability to accurately detect the glucose content.It was found that the three-dimensional hybrid nanostructure on the electrode surface realized the rapid direct electrochemistry of glucose oxidase.Therefore,the biosensor achieved high glucose detection sensitivity 11.64μA·L/(mmol.cm^(2)),low detection limit(13μmol/L)and rapid response time(reaching 95%steady-state response within 3 s),when calibrating in glucose standard solution.In agricultural application,the as-prepared biosensor was employed to detect the glucose concentration of tomato and cucumber samples.The results showed that the relative deviation of this method was less than 5%when compared with that of high-performance liquid chromatography,implying high accuracy of the presented biosensor in glucose detection in plants.展开更多
The fabrication of sensitive sensors with high selectivity is highly desirable for the detection of some important biomarkers,such as nucleic acids,proteins,small molecules and ions.DNA hybridization chain reaction(HC...The fabrication of sensitive sensors with high selectivity is highly desirable for the detection of some important biomarkers,such as nucleic acids,proteins,small molecules and ions.DNA hybridization chain reaction(HCR) and DNA supersandwich self-assembly(SSA) are two prevalent enzyme-free signal amplification strategies to improve sensitivity of the sensors.In this review,we firstly describe the characteristics about DNA HCR and DNA SSA,and then summarize the advances in the one-dimensional DNA nanostructures assisted by HCR and SSA.This review has been divided into three parts according to the two signal amplification methods and highlights recent progress in these two strategies to improve the detection sensitivity of proteins,nucleic acids,small molecules and ions.展开更多
Fluorescence in situ hybridization(FISH)is a canonical tool commonly used in environmental microbiology research to visualize targeted cells.However,the problems of low signal intensity and false-positive signals impe...Fluorescence in situ hybridization(FISH)is a canonical tool commonly used in environmental microbiology research to visualize targeted cells.However,the problems of low signal intensity and false-positive signals impede its widespread application.Alternatively,the signal intensity can be amplified by incorporating Hybridization Chain Reaction(HCR)with FISH,while the specificity can be improved through protocol modification and proper counterstaining.Here we optimized the HCR-FISH protocol for studying microbes in environmental samples,particularly marine sediments.Firstly,five sets of HCR initiator/amplifier pairs were tested on the laboratory-cultured bacterium Escherichia coli and the archaeon Methano-coccoides methylutens,and two sets displayed high hybridization efficiency and specificity.Secondly,we tried to find the best combination of sample pretreatment methods and HCR-FISH protocol for environmental sample analysis with the aim of producing less false positive signals.Various detachment methods,extraction methods and formulas of hybridization buffer were tested using sediment samples.Thirdly,an image processing method was developed to enhance the DAPI signal of microbial cells against that of abiotic particles,providing a reliable reference for FISH imaging.In summary,our optimized HCR-FISH protocol showed promise to serve as an addendum to traditional FISH for research on environmental microbes.展开更多
In this work,we proposed a ratiometric silver nanoclusters(AgNCs)fluorescent assay by designing a bifunctional-blockeraided hybridization chain reaction(HCR).Hairpin probe 1(HP1)containing two special DNA fragments(5...In this work,we proposed a ratiometric silver nanoclusters(AgNCs)fluorescent assay by designing a bifunctional-blockeraided hybridization chain reaction(HCR).Hairpin probe 1(HP1)containing two special DNA fragments(5′-CAC CGC T-3′and 5′-ATT TGC CTT TTG GGG ACG GATA-3′)at two terminals creates a red-emitting AgNC nucleation sequence(rNS,5′-CAC CGC TAT TTG CCT TTT GGG GAC GGATA-3′).We found that the presence of a toehold fragment(5′-TGCCC-3′)in HP1 could silence the rNS.Upon the addition of a target nucleic acid,HCR of HP1 and hairpin probe 2(HP2)could be initiated,resulting in the formation of long chain of DNA duplexes with multibranched rNS.As the toehold fragment in HP1participated in generating duplexes,a strong emission of rNS-templated AgNCs was observed at 670 nm.More significantly,a bifunctional blocker was introduced not only to reduce the background red-emitting fluorescence but also to play as an internal green-emitting AgNCs nucleation sequence.On the one hand,the blocker could increase the signal-to-noise-ratio of the constructed biosensor,and on the other hand,the blocker also helped to prepare ratiometric HCR-AgNCs assay with self-calibrating ability to strengthen its reproducibility.Compared with the traditional HCR-AgNCs sensors,the developed ratiometric assay based on the bifunctional-blocker-aided HCR has higher reliability,which is important for the fabrication of biosensors in various fields for practical biosensing applications.展开更多
Development of electrochemical DNA hybridization biosensors based on carbon paste electrode （CPE） and gold nanoparticle modified carbon paste electrode （NGMCPE） as transducers and ethyl green （EG） as a new elect...Development of electrochemical DNA hybridization biosensors based on carbon paste electrode （CPE） and gold nanoparticle modified carbon paste electrode （NGMCPE） as transducers and ethyl green （EG） as a new electroac- tive label is described. Electrochemical impedance spectroscopy and cyclic voltammetry techniques were applied for the investigation and comparison of bare CPE and NGMCPE surfaces. Our voltammetric and spectroscopic studies showed gold nanoparticles are enable to facilitate electron transfer between the accumulated label on DNA probe modified electrode and electrode surface and enhance the electrical signals and lead to an improved detection limit. The immobilization of a 15-mer single strand oligonucleotide probe on the working electrodes and hybridiza- tion event between the probe and its complementary sequence as a target were investigated by differential pulse voltammetry （DPV） responses of the EG accumulated on the electrodes. The effects of some experimental variables on the performance of the biosensors were investigated and optimum conditions were suggested. The selectivity of the biosensors was studied using some non-complementary oligonucleotides. Finally the detection limits were calculated as 1.35×10^-10 mol/L and 5.16×10^-11 mol/L on the CPE and NEGCPE, respectively. In addition, the bio-sensors exhibited a good selectivity, reproducibility and stability for the determination of DNA sequences.展开更多
High cost and restricted activity of electrocatalysis are the major challenges for hydrogen generation and biosensors.In this work,we provided a one-pot synthesis of Cu_(x)Pd_(y)alloy nanoparticles(NPs)with controllab...High cost and restricted activity of electrocatalysis are the major challenges for hydrogen generation and biosensors.In this work,we provided a one-pot synthesis of Cu_(x)Pd_(y)alloy nanoparticles(NPs)with controllable atomic ratio and“clean surface”.Benefiting from the preferable d-band structure,the Cu_(62)Pd_(38)NPs exhibited a lower overpotentials in the hydrogen evolution reaction(HER)over the full pH range.In the acidic media,Cu_(62)Pd_(38)NPs achieved a low overpotential of 28.12 mV for HER,which was 25.73%of Pd NPs.In the neutral solution,the overpotential by Cu_(62)Pd_(38)NPs is only 41.71%for that by uncleaned CuPd NPs.In alkaline media,the overpotential by Cu_(62)Pd_(38)NPs was declined from 38.01 to 20.20 mV after 720 min yielding hydrogen,which was only 53.14%for the initial overpotential.As applied in biosensor,the synergistic effect of Cu and Pd accelerated the kinetics of electrocatalytic process,resulting in an enhanced performance.The glucose sensor constructed by Cu_(67)Pd_(33)exhibited a wider detection range up to 100.0 mM.And the sensitivity is 379.4μA/(mM·cm^(2)),which is ca.4.63 and 14.09 folds for that by pure Cu NPs and Pd NPs,respectively.An optimal atomic percent would be conducive to optimize electrocatalytic activity of Cu_(x)Pd_(y)alloy.The volcano plots for Cu_(x)Pd_(y)would open up a new avenue for designing electrocatalysis with rationalized cost and optimized performance.展开更多
Selective and sensitive detection of trace microRNA is important for early diagnosis of diseases due to its expression level related to diseases.Herein,a triple signal amplification strategy is developed for trace mic...Selective and sensitive detection of trace microRNA is important for early diagnosis of diseases due to its expression level related to diseases.Herein,a triple signal amplification strategy is developed for trace microRNA-21 (miRNA-21) detection by combining with target-triggered cyclic strand displacement reaction (TCSDR),hybridization chain reaction (HCR) and enzyme catalytic amplification.Four DNA hairpins(H1,H2,H3,H4) are employed to form an ultralong double-strand DNA (dsDNA) structure,which is initiated by target miRNA-21.As H3 and H4 are labeled with horseradish peroxidase (HRP),numerous HRPs are loaded on the long dsDNA,producing significantly enhanced electrocatalytic signals in the hydrogen peroxide (H_(2)O_(2)) and 3,3,5,5-tetramethylbenzidine (TMB) reaction strategy.Compared with single signal amplification,the triple signal amplification strategy shows higher electrochemical response,wider dynamic range and lower detection limit for miRNA-21 detection with excellent selectivity,reproducibility and stability.Taking advantage of the triple signal amplification strategy,the proposed electrochemical biosensor can detect miRNA-21 in 10 He La cell lysates,suggesting that it is a promising method for fruitful assay in clinical diagnosis.展开更多
基金the financial support of Natural Science Foundation of Fujian Province(No.2020J01545)National Natural Science Foundation of China(No.21874019)+3 种基金United Fujian Provincial Health and Education Project for Tackling the Key Research,China(No.WKJ2016-2-30)Fujian Science and Technology Innovation Joint Found Project(No.2019Y9008)Science and Technology Plan Guided Project of Fujian Provincial Science and Technology Department(No.2020Y0022)Young Topnotch Talent Project of Colleges and Universities of Fujian Province(No.3002360301).
文摘Exosomal miRNAs,as potential biomarkers in liquid biopsy for cancer early diagnosis,have aroused widespread concern.Herein,an electrochemical biosensor based on DNA“nano-bridge”was designed and applied to detect exosomal microRNA-21(miR-21)derived from breast cancer cells.In brief,the target miR-21 can specifically open the hairpin probe 1(HP1)labeled on the gold electrode(GE)surface through strand displacement reaction.Thus the exposed loop region of HP1 can act as an initiator sequence to activate the hybridization chain reaction(HCR)between two kinetically trapped hairpin probes:HP2 immobilized on the GE surface and biotin labeled HP3 in solution.Cascade HCR leads to the formation of DNA“nano-bridge”tethered to the GE surface with a great deal of“piers”.Upon addition of avidin-modified horseradish peroxidase(HRP),numerous HRP were bound to the formed“nano-bridge”through biotin-avidin interaction to arouse tremendous current signal.In theory,only a single miR-21 is able to trigger the continuous HCR between HP2 and HP3 until all of the HP2 are exhausted.Therefore the proposed biosensor achieved ultrahigh sensitivity toward miR-21 with the detection limit down to 168 amol/L,as well as little cross-hybridization even at the single-base-mismatched level.Successful attempts were also made in the detection of exosomal miR-21 obtained from the MCF-7 of breast cancer cell line.To our knowledge,this is the first attempt to built horizontal DNA nano-structure on the electrode surface for exosomal miRNAs detection.In a word,the high sensitivity,selectivity,low cost make the proposed method hold great potential application for early point-of-care(POC)diagnostics of cancer.
基金funded by the Key-Area Research and Development Program of Guangdong Province (2019B020219002)the Characteristic Innovation Project of Ordinary University of Guangdong Province (2019KTSCX018)+1 种基金the Guangdong Natural Science Funds for Distinguished Young Scholar (2014A030306005)the Guangdong Basic and Applied Basic Research Foundation (2019A1515110929),China.
文摘A microelectrode glucose biosensor based on a three-dimensional hybrid nanoporous platinum/graphene oxide nanostructure was developed for rapid glucose detection of tomato and cucumber fruits.The nanostructure was fabricated by a two-step modification method on a microelectrode for loading a larger amount of glucose oxidase.The nanoporous structure was prepared on the surface of the platinum microelectrode by electrochemical etching,and then graphene oxide was deposited on the prepared nanoporous electrode by electrochemical deposition.The nanoporous platinum/graphene oxide nanostructure had the advantage of improving the effective surface area of the electrode and the loading quantity of glucose oxidase.As a result,the biosensor achieved a wide range of 0.1-20.0 mmol/L in glucose detection,which had the ability to accurately detect the glucose content.It was found that the three-dimensional hybrid nanostructure on the electrode surface realized the rapid direct electrochemistry of glucose oxidase.Therefore,the biosensor achieved high glucose detection sensitivity 11.64μA·L/(mmol.cm^(2)),low detection limit(13μmol/L)and rapid response time(reaching 95%steady-state response within 3 s),when calibrating in glucose standard solution.In agricultural application,the as-prepared biosensor was employed to detect the glucose concentration of tomato and cucumber samples.The results showed that the relative deviation of this method was less than 5%when compared with that of high-performance liquid chromatography,implying high accuracy of the presented biosensor in glucose detection in plants.
基金supported by the National Basic Research Program of China(2015CB932600,2013CB933000)the National Natural Science Foundation of China(21505101,21375042,21405054, 21404097)1000 Young Talent(to Fan Xia) and Zhejiang Provincial Natural Science Foundation of China(LQ16B050003)
文摘The fabrication of sensitive sensors with high selectivity is highly desirable for the detection of some important biomarkers,such as nucleic acids,proteins,small molecules and ions.DNA hybridization chain reaction(HCR) and DNA supersandwich self-assembly(SSA) are two prevalent enzyme-free signal amplification strategies to improve sensitivity of the sensors.In this review,we firstly describe the characteristics about DNA HCR and DNA SSA,and then summarize the advances in the one-dimensional DNA nanostructures assisted by HCR and SSA.This review has been divided into three parts according to the two signal amplification methods and highlights recent progress in these two strategies to improve the detection sensitivity of proteins,nucleic acids,small molecules and ions.
基金We thank for the funding:National Key R&D Program of China(grant numbers 2018 YFC0310800,2018YFC0310803)COMRA Project DY135-B2-12+3 种基金the National Natural Science Foundation of China(grant numbers 41525011,91751205,11774225)the Recruitment Program of Global Experts(Program for Young Professionals),and the Natural Science Foundation of Shanghai(grant no.18ZR1419800)This is also a contribution to the Center for Ocean Mega-Science,Chinese Academy of Sciences,the Senior User Project of RV KEXUE(KEXUE2019GZ06)the International Center for Deep-Life Investigation(IC-DLI).We thank Gunter Wegener for providing the ANME enrichment sample.
文摘Fluorescence in situ hybridization(FISH)is a canonical tool commonly used in environmental microbiology research to visualize targeted cells.However,the problems of low signal intensity and false-positive signals impede its widespread application.Alternatively,the signal intensity can be amplified by incorporating Hybridization Chain Reaction(HCR)with FISH,while the specificity can be improved through protocol modification and proper counterstaining.Here we optimized the HCR-FISH protocol for studying microbes in environmental samples,particularly marine sediments.Firstly,five sets of HCR initiator/amplifier pairs were tested on the laboratory-cultured bacterium Escherichia coli and the archaeon Methano-coccoides methylutens,and two sets displayed high hybridization efficiency and specificity.Secondly,we tried to find the best combination of sample pretreatment methods and HCR-FISH protocol for environmental sample analysis with the aim of producing less false positive signals.Various detachment methods,extraction methods and formulas of hybridization buffer were tested using sediment samples.Thirdly,an image processing method was developed to enhance the DAPI signal of microbial cells against that of abiotic particles,providing a reliable reference for FISH imaging.In summary,our optimized HCR-FISH protocol showed promise to serve as an addendum to traditional FISH for research on environmental microbes.
基金supported by the National Natural Science Foundation of China(22304062)the Zhejiang Provincial Natural Science Foundation of China(LTGY24B050002)+2 种基金the Program for Science and Technology of Jiaxing(2023AY40028)the Baiqing Foundation of Jiaxing University(CD70621010)Springer Nature or its licensor(e.g.a society or other partner)holds exclusive rights to this article under a publishing agreement with the author(s)or other rightsholder(s)author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law。
文摘In this work,we proposed a ratiometric silver nanoclusters(AgNCs)fluorescent assay by designing a bifunctional-blockeraided hybridization chain reaction(HCR).Hairpin probe 1(HP1)containing two special DNA fragments(5′-CAC CGC T-3′and 5′-ATT TGC CTT TTG GGG ACG GATA-3′)at two terminals creates a red-emitting AgNC nucleation sequence(rNS,5′-CAC CGC TAT TTG CCT TTT GGG GAC GGATA-3′).We found that the presence of a toehold fragment(5′-TGCCC-3′)in HP1 could silence the rNS.Upon the addition of a target nucleic acid,HCR of HP1 and hairpin probe 2(HP2)could be initiated,resulting in the formation of long chain of DNA duplexes with multibranched rNS.As the toehold fragment in HP1participated in generating duplexes,a strong emission of rNS-templated AgNCs was observed at 670 nm.More significantly,a bifunctional blocker was introduced not only to reduce the background red-emitting fluorescence but also to play as an internal green-emitting AgNCs nucleation sequence.On the one hand,the blocker could increase the signal-to-noise-ratio of the constructed biosensor,and on the other hand,the blocker also helped to prepare ratiometric HCR-AgNCs assay with self-calibrating ability to strengthen its reproducibility.Compared with the traditional HCR-AgNCs sensors,the developed ratiometric assay based on the bifunctional-blocker-aided HCR has higher reliability,which is important for the fabrication of biosensors in various fields for practical biosensing applications.
文摘Development of electrochemical DNA hybridization biosensors based on carbon paste electrode （CPE） and gold nanoparticle modified carbon paste electrode （NGMCPE） as transducers and ethyl green （EG） as a new electroac- tive label is described. Electrochemical impedance spectroscopy and cyclic voltammetry techniques were applied for the investigation and comparison of bare CPE and NGMCPE surfaces. Our voltammetric and spectroscopic studies showed gold nanoparticles are enable to facilitate electron transfer between the accumulated label on DNA probe modified electrode and electrode surface and enhance the electrical signals and lead to an improved detection limit. The immobilization of a 15-mer single strand oligonucleotide probe on the working electrodes and hybridiza- tion event between the probe and its complementary sequence as a target were investigated by differential pulse voltammetry （DPV） responses of the EG accumulated on the electrodes. The effects of some experimental variables on the performance of the biosensors were investigated and optimum conditions were suggested. The selectivity of the biosensors was studied using some non-complementary oligonucleotides. Finally the detection limits were calculated as 1.35×10^-10 mol/L and 5.16×10^-11 mol/L on the CPE and NEGCPE, respectively. In addition, the bio-sensors exhibited a good selectivity, reproducibility and stability for the determination of DNA sequences.
基金the Natural Science Foundation of Heilongjiang Province(Nos.YQ2019A004 and ZD2020E006)the Natural Science Foundation for Post-doctoral Scientists of Heilongjiang Province(No.LBH-Z19070)+2 种基金the National Natural Science Foundation of China(Nos.11444004 and 61372013)Guangdong Basic and Applied Basic Research Foundation(No.2019A1515110585)the Research Fund of State Key Laboratory of Mechanics and Control of Mechanical Structures from Nanjing University of Aeronautics and Astronautics(No.MCMS-E-0522G04).
文摘High cost and restricted activity of electrocatalysis are the major challenges for hydrogen generation and biosensors.In this work,we provided a one-pot synthesis of Cu_(x)Pd_(y)alloy nanoparticles(NPs)with controllable atomic ratio and“clean surface”.Benefiting from the preferable d-band structure,the Cu_(62)Pd_(38)NPs exhibited a lower overpotentials in the hydrogen evolution reaction(HER)over the full pH range.In the acidic media,Cu_(62)Pd_(38)NPs achieved a low overpotential of 28.12 mV for HER,which was 25.73%of Pd NPs.In the neutral solution,the overpotential by Cu_(62)Pd_(38)NPs is only 41.71%for that by uncleaned CuPd NPs.In alkaline media,the overpotential by Cu_(62)Pd_(38)NPs was declined from 38.01 to 20.20 mV after 720 min yielding hydrogen,which was only 53.14%for the initial overpotential.As applied in biosensor,the synergistic effect of Cu and Pd accelerated the kinetics of electrocatalytic process,resulting in an enhanced performance.The glucose sensor constructed by Cu_(67)Pd_(33)exhibited a wider detection range up to 100.0 mM.And the sensitivity is 379.4μA/(mM·cm^(2)),which is ca.4.63 and 14.09 folds for that by pure Cu NPs and Pd NPs,respectively.An optimal atomic percent would be conducive to optimize electrocatalytic activity of Cu_(x)Pd_(y)alloy.The volcano plots for Cu_(x)Pd_(y)would open up a new avenue for designing electrocatalysis with rationalized cost and optimized performance.
基金supported by the National Key Research and Development Program of China (No. 2017YFA0205302)the Natural Science Foundation of Jiangsu Province-Major Project (No. BK20212012)+2 种基金the National Natural Science Foundation of China (No. 21874071)the “Six Talents Peak” Foundation of Jiangsu Province (No. SWYY-046)the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD, No. YX030003)。
文摘Selective and sensitive detection of trace microRNA is important for early diagnosis of diseases due to its expression level related to diseases.Herein,a triple signal amplification strategy is developed for trace microRNA-21 (miRNA-21) detection by combining with target-triggered cyclic strand displacement reaction (TCSDR),hybridization chain reaction (HCR) and enzyme catalytic amplification.Four DNA hairpins(H1,H2,H3,H4) are employed to form an ultralong double-strand DNA (dsDNA) structure,which is initiated by target miRNA-21.As H3 and H4 are labeled with horseradish peroxidase (HRP),numerous HRPs are loaded on the long dsDNA,producing significantly enhanced electrocatalytic signals in the hydrogen peroxide (H_(2)O_(2)) and 3,3,5,5-tetramethylbenzidine (TMB) reaction strategy.Compared with single signal amplification,the triple signal amplification strategy shows higher electrochemical response,wider dynamic range and lower detection limit for miRNA-21 detection with excellent selectivity,reproducibility and stability.Taking advantage of the triple signal amplification strategy,the proposed electrochemical biosensor can detect miRNA-21 in 10 He La cell lysates,suggesting that it is a promising method for fruitful assay in clinical diagnosis.
