Small RNAs(sRNAs)are key players in the regulation of bacterial gene expression.However,the distribution and regulatory functions of sRNA in pig farm wastewater treatment plants(WWTPs)remains unknown.In this study,the...Small RNAs(sRNAs)are key players in the regulation of bacterial gene expression.However,the distribution and regulatory functions of sRNA in pig farm wastewater treatment plants(WWTPs)remains unknown.In this study,the wastewaters in anoxic and oxic tanks of the WWTPs were collected.The profiles of the community structure,mRNA expression,and sRNA expression of bacteria in pig farm wastewater were investigated using transcriptome sequencing and qPCR.This study demonstrated that there was a higher abundance of sRNA in the pig farm WWTPs and 52 sRNAs were detected.The sRNAs were mainly present in Proteobacteria and Firmicutes,including the potential human pathogenic bacteria(HPB)(Escherichia,Shigella,Bordetella and Morganella),crop pathogen(Pectobacterium)and denitrifying bacteria(Zobellella).And the sRNAs were involved in the bacterial functional activities such as translation,transcription,drug resistance,membrane transport and amino acid metabolism.In addition,most sRNAs had a higher abundance in anoxic tanks which contained a higher abundance of the genes associated with infectious diseases and drug resistance than that in oxic tanks.The results presented here show that in pig farm WWTPs,sRNA played an important role in bacterial function activities,especially the infectious diseases,drug resistance and denitrification,which can provide a new point of penetration for improving the pig farm WWTPs.展开更多
Field resistances of nine accessions of common wild rice （Oryza rufipogon Griff.） and one rice variety （IR24） were evaluated by using nine strains of bacterial blight pathogen （Xanthomonas oryzae pv. oryzae） fro...Field resistances of nine accessions of common wild rice （Oryza rufipogon Griff.） and one rice variety （IR24） were evaluated by using nine strains of bacterial blight pathogen （Xanthomonas oryzae pv. oryzae） from the Philippines. IR24 was highly susceptible to all the strains, and six common wild rice accessions resisted all the nine strains, with a resistance frequency of 67%. The accessions Yulin and Wanning were only susceptible to PXO280 and PXO71, respectively. The accession Gaozhou was susceptible to the three strains PXO79, PXO99 and PXO339, whereas resistant to the other six strains. It could be concluded that there is at least one resistance gene in each common wild rice accession. The functional markers of the genes xa5, xa13, Xa21 and Xa27 were used to detect the presence of these resistance genes in the nine tested wild rice accessions, and it was found that four wild rice accessions contained heterozygous xa13. Among the nine common wild rice accessions, five were homozygous for Xa27 and three homozygous for xa27, and the accession Laibin contained neither xa27 nor Xa27. In addition, there were no xa5 and Xa21 in all of these accessions.展开更多
Crude oil pollution is a significant global environmental challenge.The eastern Gansu Province on the Loess Plateau,an important agricultural region containing the Changqing Oilfield,is facing increasing crude oil con...Crude oil pollution is a significant global environmental challenge.The eastern Gansu Province on the Loess Plateau,an important agricultural region containing the Changqing Oilfield,is facing increasing crude oil contamination.Understanding how microbial communities respond to varying pollution levels is critical for developing effective bioremediation strategies.This study examined how different concentrations of crude oil affect soil properties and microbial communities in Qingyang City,eastern Gansu Province,China by comparing lightly polluted(1895.84-2696.54 mg/kg total petroleum hydrocarbons(TPH)),heavily polluted(4964.25-7153.61 mg/kg TPH),and uncontaminated(CK)soils.Results revealed that petroleum contamination significantly increased total organic carbon(TOC),pH,C:N:P ratio,and the activities of dehydrogenase(DHA)and polyphenol oxidase(PPO),while reducing total nitrogen(TN),available nitrogen(AN),total phosphorus(TP),available phosphorus(AP),available potassium(AK),soil organic matter(SOM),soil water content(SWC),the activities of urease(URE)and alkaline phosphatase(APA),and microbial alpha diversity(P<0.050).Light pollution(LP)soils demonstrated an increase in culturable microorganisms,whereas heavy pollution(HP)soils exhibited increased hydrocarbon-degrading microbes and higher expression of key functional genes,such as alkane monooxygenase(AlkB),cytochrome P450 alkane hydroxylases(P450),catechol 2,3-dioxygenase(C23O),and naphthalene dioxygenase(Nah)(P<0.050).Non-metric multidimensional scaling(NMDS)and redundancy analysis(RDA)indicated evident variations in microbial community structure across different oil contamination levels.LP soils were dominated by bacterial genera Pseudoxanthomonas and Solimonadaceae,whereas Pseudomonas,Nocardioides,and hydrocarbon-degrading genera(Marinobacter,Idiomarina,and Halomonas)were predominant in HP soils.The fungal genus Pseudallescheria exhibited the most pronounced abundance shift between LP and HP soils(P<0.050).Environmental factor analysis identified AN,SWC,TN,SOM,and alpha diversity indices(Shannon index and Chao1 index)as the key differentiators of CK soils,whereas the pollutant levels and metal content were characterized in HP soils.Hydrocarbon-degrading microbial abundance was a defining trait of HP soils.Metabolic pathway analysis revealed enhanced aromatic hydrocarbon degradation in HP soils,indicating microbial adaptation to severe contamination.These findings demonstrated that crude oil pollution suppressed soil nutrients while reshaping the structure and function of microbial communities.Pollution intensity directly affected microbial composition and degradation potential.This study offers valuable insights into microbial responses across contamination gradients and supports the development of targeted bioremediation strategies for oil-contaminated loess soils.展开更多
Improving soil quality while achieving higher productivity is the major challenge in the agricultural industry. Wheat(Triticum aestivum L.)–maize(Zea mays L.)(W–M) rotation is the dominant planting pattern in the Hu...Improving soil quality while achieving higher productivity is the major challenge in the agricultural industry. Wheat(Triticum aestivum L.)–maize(Zea mays L.)(W–M) rotation is the dominant planting pattern in the Huang-HuaiHai Plain and is important for food security in China. However, the soil quality is deteriorating due to the W–M rotation’s long-term, intensive, and continuous cultivation. Introducing legumes into the W–M rotation system may be an effective way to improve soil quality. In this study, we aimed to verify this hypothesis by exploring efficient planting systems(wheat–peanut(Arachis hypogaea L.)(W–P) rotation and wheat rotated with maize and peanut intercropping(W–M/P)) to achieve higher agricultural production in the Huang-Huai-Hai Plain. Using traditional W–M rotation as the control, we evaluated crop productivity, net returns, soil microorganisms(SMs), and soil organic carbon(SOC) fractions for three consecutive years. The results indicated that wheat yields were significantly increased under W–P and W–M/P(382.5–579.0 and 179.8–513.1 kg ha-1, respectively) compared with W–M. W–P and W–M/P provided significantly higher net returns(58.2 and 70.4%, respectively) than W–M. W–M/P and W–M retained the SOC stock more efficiently than W–P, increasing by 25.46–31.03 and 14.47–27.64%, respectively, in the 0–20 cm soil layer. Compared with W–M, W–M/P improved labile carbon fractions;the sensitivity index of potentially mineralizable carbon, microbial biomass carbon(MBC), and dissolved organic carbon was 31.5, 96.5–157.2, and 17.8% in 20–40, 10–40, and 10–20 cm soil layers, respectively. The bacterial community composition and bacteria function were altered as per the soil depth and planting pattern. W–M/P and W–M exhibited similar bacterial community composition and function in 0–20 and 20–40 cm soil layers. Compared with W–P, a higher abundance of functional genes, namely, contains mobile elements and stress-tolerant, and a lower abundance of genes, namely,potentially pathogenic, were observed in the 10–20 cm soil layer of W–M and the 0–20 cm soil layer of W–M/P. SOC and MBC were the main factors affecting soil bacterial communities, positively correlated with Sphingomonadales and Gemmatimonadales and negatively correlated with Blastocatellales. Organic input was the main factor affecting SOC and SMs, which exhibited feedback effects on crop productivity. In summary, W–M/P improved productivity, net returns, and SOC pool compared with traditional W–M rotation systems, and it is recommended that plant–soil–microbial interactions be considered while designing high-yield cropping systems.展开更多
Sexual dimorphism of plants shapes the diff erent morphology and physiology between males and females.However,it is still unclear whether it infl uences belowground ecological processes.In this study,rhizosphere soil ...Sexual dimorphism of plants shapes the diff erent morphology and physiology between males and females.However,it is still unclear whether it infl uences belowground ecological processes.In this study,rhizosphere soil of male and female Populus deltoides and bulk soil were collected from an 18-year plantation(male and female trees mix-planted)and grouped into three soil compartments.Soil carbon(C),nitrogen(N)and phosphorus(P)levels were determined,and soil bacterial communities were analyzed by high-throughput sequencing.The results showed the less total carbon and total organic carbon,the more nutrients(available phosphorus,nitrate nitrogen and ammonium nitrogen)available in the rhizosphere soils of female poplars than soils of males.However,α-diversity indices of the rhizosphere bacterial communities under male plants were signifi-cantly higher.Principal component analysis showed that the bacterial communities were signifi cantly diff erent between the male and female soil compartments.Further,the bacterial co-occurrence network in soil under male trees had more nodes and edges than under females.BugBase analysis showed the more functional bacteria taxa related to biofi lm formation and antioxidation under males.The results indicate that soils under male poplars had more diverse and more complex co-occurrence networks of the rhizosphere bacterial community than soils under female trees,implying that male poplars might have better environmental adaptability.The study provides insight into the diff erent soil-microbe interactions of dioecious plants.More details about the infl uencing mechanism of sexual dimorphism on rhizosphere soil bacterial communities need to be further studied.展开更多
The disturbance of the human microbiota influences the occurrence and progression of many diseases.Live therapeutic bacteria,with their genetic manipulability,anaerobic tendencies,and immunomodulatory properties,are e...The disturbance of the human microbiota influences the occurrence and progression of many diseases.Live therapeutic bacteria,with their genetic manipulability,anaerobic tendencies,and immunomodulatory properties,are emerging as promising therapeutic agents.However,their clinical applications face challenges in maintaining activity and achieving precise spatiotemporal release,particularly in the harsh gastrointestinal environment.This review highlights the innovative bacterial functionalized encapsulation strategies developed through advances in physicochemical and biological techniques.We comprehensively review how bacterial encapsulation strategies can be used to provide physical barriers and enhanced adhesion properties to live microorganisms,while introducing superior material properties to live bacteria.In addition,this review outlines how bacterial surface coating can facilitate targeted delivery and precise spatiotemporal release of live bacteria.Furthermore,it elucidates their potential applications for treating different diseases,along with critical perspectives on challenges in clinical translation.This review comprehensively analyzes the connection between functionalized bacterial encapsulation and innovative biomedical applications,providing a theoretical reference for the development of next-generation bacterial therapies.展开更多
The microbial communities colonized on microplastics(MPs)have attracted widespread attention.However,few studies focused on the MPs impacts on mangrove ecosystems,particularly on bacterial communities.We investigated ...The microbial communities colonized on microplastics(MPs)have attracted widespread attention.However,few studies focused on the MPs impacts on mangrove ecosystems,particularly on bacterial communities.We investigated the MPs pollution in mangrove of Zhujiang(Pearl)River estuary(ZRE).To study the potential risk posed by MPs to the mangrove ecosystems,the differences in bacterial communities,functions,and complexity between MPs and sediment samples were reported for the first time.Microplastics(2991±1586 items/kg dry weight(dw))in sediment were mainly fibers and polyethylene,mostly transparent,and in size less than 0.5 mm.Bacterial communities and functions significantly differed from MPs in mangrove sediment.Compared with sediment,MPs significantly enriched members of Proteobacteria,Bacteroidetes,and Actinobacteria,as well as the bacteria associated with plastic-degrading and human diseases on their surface,suggesting that microbial communities on MPs may promote MPs degradation and the spread of diseases,posing potential risk to mangrove ecosystems and human health.Although bacteria on MPs exhibited a lower diversity,the co-occurrence network analysis indicated that network of bacteria colonized on MPs was bigger and more complex than those of mangrove sediment,illustrating that MPs can act as a distinct habitat in this special ecosystem.This study provides a new perspective for increasing our understanding of microplastic pollution in mangrove ecosystems.展开更多
The distributions of N utilizing bacteria (denitrifying bacteria and ammonifying bacteria) ,P utilizing bacteria (organic phosphobacteria and inorganic phosphobacteria) and heterotrophic bacteria in the Changjiang Est...The distributions of N utilizing bacteria (denitrifying bacteria and ammonifying bacteria) ,P utilizing bacteria (organic phosphobacteria and inorganic phosphobacteria) and heterotrophic bacteria in the Changjiang Estuary,and the roles of main environmental factors in distributing bacteria,are explored with observations from two cruises in June and August 2006.Comparisons between the two important periods of initial hypoxia phase (June) and developed hypoxia phase (August) show differences in both bacterial distributions and the associated main environmental factors.First,the primary group of ammonifying bacteria has larger magnitude with spatial maximum value in the hypoxic stations related to sediment in August.The phosphobacterial abundance and detection rates in August are much lower than those in June,but the denitrifying bacterial abundance becomes greater in August.However,the difference of heterotrophic bacterial abundance between June and August is not obvious.Second,main environmental factors influencing bacteria vary from initial hypoxia phase to developed hypoxia phase.Two parameters (salinity and NO3) in surface water and five environmental parameters (pH,salinity,PO43,NO3and temperature) in bottom water and surface sediment play major roles in the bacterial abundance in June,while different parameter combinations (salinity and PO43) in surface water and different parameter combinations (DO,DOC,NO3,PO43 and pH) in bottom water and surface sediment play major roles in August.Moreover,the bottom bacteria distributions in area south of 31 N are related to the position of the Taiwan Warm Current in June.The bacterial abundance and distribution may respond to the environmental change in the hypoxia processes of initial phase and developed phase.During the hypoxia processes,the whole structure of bacterial functional groups probably turns to different states,causing the recycling of nutrient regeneration and aggravating hypoxia regionally.展开更多
The potential ecotoxicologial risks of methamidophos,copper,and their combinations on microbial community of black soil ecosystem in the Northeast China were assessed in species richness and structures by using 16S rD...The potential ecotoxicologial risks of methamidophos,copper,and their combinations on microbial community of black soil ecosystem in the Northeast China were assessed in species richness and structures by using 16S rDNA-PCR-DGGE analysis approach,and functional characteristics at community levels by using BIOLOG^(GN) system analysis method as well as two conventional methods(DHA and SIR).All results of DGGE banding fingerprint patterns(amplified by bacterial specific 16S rDNA V_(3) high variable region universal primer)indicated that the species richness of bacterial community in tested soil was significantly decreased to different extents by using different concentrations of single methamidophos,copper,especially some of their combinations had worse effects than their corresponding single factors.In addition,the structures of soil bacterial community had been disturbed under all stresses applied in this study because of the enrichment of some species and the disappearance of other species from the bacterial community.The effects of the single factors with lower concentrations on the communiy structure were weaker than those with higher concentrations.Moreover,the bacterial community structures under the combined stresses of methamidophos and copper were significantly different from those of control and their corresponding single factors.The change of DHA and carbon source substrate utilizing fingerprint patterns based on BIOLOG^(GN)system were two relatively sensitive directors corresponding to the stress presented in this study.Between methamodophos and copper,there happened the significant joint-toxic actions when they were used in combination on DHA and carbon source substrate utilizing fingerprint patterns of soil bacterial communities.The DHA of soil under the combined stresses was lower than that of the control and that under the single factors,and the BIOLOG^(GN) substrate utilizing patterns of soil treated by combinations were distinctively differentiated from the control and their corresponding single factors.From all of above,the methamidophos,copper,especially their combinations had the clearly potential ecotoxicological risks to influence the natural soil microbial ecological system by changing the structure,richness,and the functional characteristics of microbial community.展开更多
Among many ecological services provided by mangrove ecosystems,soil organic carbon(SOC)storages have recently received much attention owing to the increasing atmospheric partial pressure of dissolved CO_(2)(pCO_(2)).B...Among many ecological services provided by mangrove ecosystems,soil organic carbon(SOC)storages have recently received much attention owing to the increasing atmospheric partial pressure of dissolved CO_(2)(pCO_(2)).Bacteria are fundamental to ecosystem functions and strongly influence the coupling of coastal carbon,nitrogen,and sulfur cycling in soils.The SOC storage and bacterial communities along a restored mangrove soil chronosequence in the Jiulong River Estuary were explored using the 16S rDNA sequencing technique.The results showed the SOC storage in the 100 cm soil profile was 103.31±5.87 kg C m^(−2)and 93.10±11.28 kg C m^(−2)for mangroves with afforestation ages of 36 and 60 years,respectively.The total nitrogen(TN)and total sulfur(TS)contents exhibited significant correlations with the SOC in the mangrove soils,but only TN and SOC showed significant correlation in tidal flat soils.Although the tidal flats and mangroves occupied the contiguous intertidal zone within several kilometers,the variations in the SOC storage along the restored mangrove soil chronosequence were notably higher.The Functional Annotation of Prokaryotic Taxa(FAPROTAX)database was used to annotate the metabolic functions of the bacteria in the soils.The annotation revealed that only four metabolic functions were enriched with a higher relative abundance of the corresponding bacteria,and these enriched functions were largely associated with sulfate reduction.In addition,the specifically critical bacterial taxa that were associated with the SOC accumulation and nutrient cycling,shaped the distinct metabolic functions,and consequently facilitated the SOC accumulation in the mangrove soils with various afforestation ages.The general homogenization of the microbial community and composition along the intertidal soil chronosequence was primarily driven by the reciprocating tidal flows and geographical contiguity.展开更多
Background No-tillage(NT)is a widely used field management to reduce soil erosion and degradation and is suggested to be beneficial for enhancing soil carbon(C)sequestration capacity.Nonetheless,the effects of NT on s...Background No-tillage(NT)is a widely used field management to reduce soil erosion and degradation and is suggested to be beneficial for enhancing soil carbon(C)sequestration capacity.Nonetheless,the effects of NT on soil total carbon(TC)content in aeolian sandy soils are not extensively explored,and the underlying mechanisms are not clear.In our field experiments,the influence of NT and conventional tillage(CT)on sandy soil was studied.Methods We estimated the changes in soil TC in response to NT practice in a Cyperus esculentus L.field located at semi-arid Horqin sandy land,China.To unravel the underlying mechanisms,plant traits,soil properties and soil microbial characteristics were measured in parallel.The variations in soil bacterial community structure were investigated by 16S rRNA amplicon sequencing.The functionality of soil bacterial community was predicted based on OTU tables by using PICRUSt2.Results NT increased soil TC content in this sandy agroecosystem within a short-term experimental period,compared to CT.The underlying mechanisms might rely on three aspects.First,NT increased soil TC content through increasing photosynthesis and plant biomass,and thus,the plant-derived dissolved organic C.Second,NT increased the C immobilized in soil microbial biomass by increasing microbial C demands and C use efficiency.Third,NT increased the dominance of oligotrophic members in bacterial communities by decreasing available nutrient levels,which is associated with the recalcitrance and stability of the soil organic carbon.Conclusions The present study enriched our knowledge on the changes in the plant-soil-microbe continuum in response to NT in a semi-arid sandy agroecosystem.Still,this study provides a reference for modifying tillage practices to benefit crop yield as well as soil C sequestration.展开更多
基金financially supported by the Guangdong Technological Innovation Strategy of Special Funds(Key Areas of Research and Development Program,No.2018B020205003)
文摘Small RNAs(sRNAs)are key players in the regulation of bacterial gene expression.However,the distribution and regulatory functions of sRNA in pig farm wastewater treatment plants(WWTPs)remains unknown.In this study,the wastewaters in anoxic and oxic tanks of the WWTPs were collected.The profiles of the community structure,mRNA expression,and sRNA expression of bacteria in pig farm wastewater were investigated using transcriptome sequencing and qPCR.This study demonstrated that there was a higher abundance of sRNA in the pig farm WWTPs and 52 sRNAs were detected.The sRNAs were mainly present in Proteobacteria and Firmicutes,including the potential human pathogenic bacteria(HPB)(Escherichia,Shigella,Bordetella and Morganella),crop pathogen(Pectobacterium)and denitrifying bacteria(Zobellella).And the sRNAs were involved in the bacterial functional activities such as translation,transcription,drug resistance,membrane transport and amino acid metabolism.In addition,most sRNAs had a higher abundance in anoxic tanks which contained a higher abundance of the genes associated with infectious diseases and drug resistance than that in oxic tanks.The results presented here show that in pig farm WWTPs,sRNA played an important role in bacterial function activities,especially the infectious diseases,drug resistance and denitrification,which can provide a new point of penetration for improving the pig farm WWTPs.
基金supported by the Project of the National Ministry of Science and Technology,China (Grant No.2006AA10Z1C8)the Knowledge Innovative Program of the Chinese Academy of Sciences (Grant Nos.KSCX-YW-N-009-02 and KSCX1-YW-03)+1 种基金the National Basic Research Program of China (Grant No.2009CB126004)the Natural Science Foundation of Hainan Province,China (Grant No.309019)
文摘Field resistances of nine accessions of common wild rice （Oryza rufipogon Griff.） and one rice variety （IR24） were evaluated by using nine strains of bacterial blight pathogen （Xanthomonas oryzae pv. oryzae） from the Philippines. IR24 was highly susceptible to all the strains, and six common wild rice accessions resisted all the nine strains, with a resistance frequency of 67%. The accessions Yulin and Wanning were only susceptible to PXO280 and PXO71, respectively. The accession Gaozhou was susceptible to the three strains PXO79, PXO99 and PXO339, whereas resistant to the other six strains. It could be concluded that there is at least one resistance gene in each common wild rice accession. The functional markers of the genes xa5, xa13, Xa21 and Xa27 were used to detect the presence of these resistance genes in the nine tested wild rice accessions, and it was found that four wild rice accessions contained heterozygous xa13. Among the nine common wild rice accessions, five were homozygous for Xa27 and three homozygous for xa27, and the accession Laibin contained neither xa27 nor Xa27. In addition, there were no xa5 and Xa21 in all of these accessions.
基金supported by the Natural Science Foundation of Gansu Province(23JRRM0752,22JR5RA345,21JR1RM333)the Project of Science and Technology Specialist in Gansu Province(24CXGM002)+2 种基金the National Natural Science Foundation of China(31860148)the Research Fund Project for PhD of Longdong University(XYBYZK2208)the Natural Science Foundation of Longdong University(HXZK2488).
文摘Crude oil pollution is a significant global environmental challenge.The eastern Gansu Province on the Loess Plateau,an important agricultural region containing the Changqing Oilfield,is facing increasing crude oil contamination.Understanding how microbial communities respond to varying pollution levels is critical for developing effective bioremediation strategies.This study examined how different concentrations of crude oil affect soil properties and microbial communities in Qingyang City,eastern Gansu Province,China by comparing lightly polluted(1895.84-2696.54 mg/kg total petroleum hydrocarbons(TPH)),heavily polluted(4964.25-7153.61 mg/kg TPH),and uncontaminated(CK)soils.Results revealed that petroleum contamination significantly increased total organic carbon(TOC),pH,C:N:P ratio,and the activities of dehydrogenase(DHA)and polyphenol oxidase(PPO),while reducing total nitrogen(TN),available nitrogen(AN),total phosphorus(TP),available phosphorus(AP),available potassium(AK),soil organic matter(SOM),soil water content(SWC),the activities of urease(URE)and alkaline phosphatase(APA),and microbial alpha diversity(P<0.050).Light pollution(LP)soils demonstrated an increase in culturable microorganisms,whereas heavy pollution(HP)soils exhibited increased hydrocarbon-degrading microbes and higher expression of key functional genes,such as alkane monooxygenase(AlkB),cytochrome P450 alkane hydroxylases(P450),catechol 2,3-dioxygenase(C23O),and naphthalene dioxygenase(Nah)(P<0.050).Non-metric multidimensional scaling(NMDS)and redundancy analysis(RDA)indicated evident variations in microbial community structure across different oil contamination levels.LP soils were dominated by bacterial genera Pseudoxanthomonas and Solimonadaceae,whereas Pseudomonas,Nocardioides,and hydrocarbon-degrading genera(Marinobacter,Idiomarina,and Halomonas)were predominant in HP soils.The fungal genus Pseudallescheria exhibited the most pronounced abundance shift between LP and HP soils(P<0.050).Environmental factor analysis identified AN,SWC,TN,SOM,and alpha diversity indices(Shannon index and Chao1 index)as the key differentiators of CK soils,whereas the pollutant levels and metal content were characterized in HP soils.Hydrocarbon-degrading microbial abundance was a defining trait of HP soils.Metabolic pathway analysis revealed enhanced aromatic hydrocarbon degradation in HP soils,indicating microbial adaptation to severe contamination.These findings demonstrated that crude oil pollution suppressed soil nutrients while reshaping the structure and function of microbial communities.Pollution intensity directly affected microbial composition and degradation potential.This study offers valuable insights into microbial responses across contamination gradients and supports the development of targeted bioremediation strategies for oil-contaminated loess soils.
基金National Natural Science Foundation of China (42107376)the earmarked fund for China Agriculture Research System (CARS-13)。
文摘Improving soil quality while achieving higher productivity is the major challenge in the agricultural industry. Wheat(Triticum aestivum L.)–maize(Zea mays L.)(W–M) rotation is the dominant planting pattern in the Huang-HuaiHai Plain and is important for food security in China. However, the soil quality is deteriorating due to the W–M rotation’s long-term, intensive, and continuous cultivation. Introducing legumes into the W–M rotation system may be an effective way to improve soil quality. In this study, we aimed to verify this hypothesis by exploring efficient planting systems(wheat–peanut(Arachis hypogaea L.)(W–P) rotation and wheat rotated with maize and peanut intercropping(W–M/P)) to achieve higher agricultural production in the Huang-Huai-Hai Plain. Using traditional W–M rotation as the control, we evaluated crop productivity, net returns, soil microorganisms(SMs), and soil organic carbon(SOC) fractions for three consecutive years. The results indicated that wheat yields were significantly increased under W–P and W–M/P(382.5–579.0 and 179.8–513.1 kg ha-1, respectively) compared with W–M. W–P and W–M/P provided significantly higher net returns(58.2 and 70.4%, respectively) than W–M. W–M/P and W–M retained the SOC stock more efficiently than W–P, increasing by 25.46–31.03 and 14.47–27.64%, respectively, in the 0–20 cm soil layer. Compared with W–M, W–M/P improved labile carbon fractions;the sensitivity index of potentially mineralizable carbon, microbial biomass carbon(MBC), and dissolved organic carbon was 31.5, 96.5–157.2, and 17.8% in 20–40, 10–40, and 10–20 cm soil layers, respectively. The bacterial community composition and bacteria function were altered as per the soil depth and planting pattern. W–M/P and W–M exhibited similar bacterial community composition and function in 0–20 and 20–40 cm soil layers. Compared with W–P, a higher abundance of functional genes, namely, contains mobile elements and stress-tolerant, and a lower abundance of genes, namely,potentially pathogenic, were observed in the 10–20 cm soil layer of W–M and the 0–20 cm soil layer of W–M/P. SOC and MBC were the main factors affecting soil bacterial communities, positively correlated with Sphingomonadales and Gemmatimonadales and negatively correlated with Blastocatellales. Organic input was the main factor affecting SOC and SMs, which exhibited feedback effects on crop productivity. In summary, W–M/P improved productivity, net returns, and SOC pool compared with traditional W–M rotation systems, and it is recommended that plant–soil–microbial interactions be considered while designing high-yield cropping systems.
基金supported by the National Natural Science Foundation of China(32071751)the National key research and development program(2021YFD220120102)+1 种基金the Natural Science Foundation of Shandong Province(ZR2018ZC08N3)the funds of the Shandong Double Tops Program(Grant No.SYL2017XTTD03).
文摘Sexual dimorphism of plants shapes the diff erent morphology and physiology between males and females.However,it is still unclear whether it infl uences belowground ecological processes.In this study,rhizosphere soil of male and female Populus deltoides and bulk soil were collected from an 18-year plantation(male and female trees mix-planted)and grouped into three soil compartments.Soil carbon(C),nitrogen(N)and phosphorus(P)levels were determined,and soil bacterial communities were analyzed by high-throughput sequencing.The results showed the less total carbon and total organic carbon,the more nutrients(available phosphorus,nitrate nitrogen and ammonium nitrogen)available in the rhizosphere soils of female poplars than soils of males.However,α-diversity indices of the rhizosphere bacterial communities under male plants were signifi-cantly higher.Principal component analysis showed that the bacterial communities were signifi cantly diff erent between the male and female soil compartments.Further,the bacterial co-occurrence network in soil under male trees had more nodes and edges than under females.BugBase analysis showed the more functional bacteria taxa related to biofi lm formation and antioxidation under males.The results indicate that soils under male poplars had more diverse and more complex co-occurrence networks of the rhizosphere bacterial community than soils under female trees,implying that male poplars might have better environmental adaptability.The study provides insight into the diff erent soil-microbe interactions of dioecious plants.More details about the infl uencing mechanism of sexual dimorphism on rhizosphere soil bacterial communities need to be further studied.
基金supports of the National Key Research and Development Program of China(2022YFD2100703)the Guangdong Province Key Areas Research and Development Programs(2022B1111070006,China)+1 种基金the Guangdong Basic and Applied Basic Research Foundation(2025A1515012225,China)the project of Guangdong Provincial Academy of Sciences(2022GDASZH-2022010101,China)for the financial support.
文摘The disturbance of the human microbiota influences the occurrence and progression of many diseases.Live therapeutic bacteria,with their genetic manipulability,anaerobic tendencies,and immunomodulatory properties,are emerging as promising therapeutic agents.However,their clinical applications face challenges in maintaining activity and achieving precise spatiotemporal release,particularly in the harsh gastrointestinal environment.This review highlights the innovative bacterial functionalized encapsulation strategies developed through advances in physicochemical and biological techniques.We comprehensively review how bacterial encapsulation strategies can be used to provide physical barriers and enhanced adhesion properties to live microorganisms,while introducing superior material properties to live bacteria.In addition,this review outlines how bacterial surface coating can facilitate targeted delivery and precise spatiotemporal release of live bacteria.Furthermore,it elucidates their potential applications for treating different diseases,along with critical perspectives on challenges in clinical translation.This review comprehensively analyzes the connection between functionalized bacterial encapsulation and innovative biomedical applications,providing a theoretical reference for the development of next-generation bacterial therapies.
基金Supported by the National Natural Science Foundation of China(Nos.42177253,41807476,41706186)Natural Science Foundation of Guangdong Province,China(No.2022A1515010197)。
文摘The microbial communities colonized on microplastics(MPs)have attracted widespread attention.However,few studies focused on the MPs impacts on mangrove ecosystems,particularly on bacterial communities.We investigated the MPs pollution in mangrove of Zhujiang(Pearl)River estuary(ZRE).To study the potential risk posed by MPs to the mangrove ecosystems,the differences in bacterial communities,functions,and complexity between MPs and sediment samples were reported for the first time.Microplastics(2991±1586 items/kg dry weight(dw))in sediment were mainly fibers and polyethylene,mostly transparent,and in size less than 0.5 mm.Bacterial communities and functions significantly differed from MPs in mangrove sediment.Compared with sediment,MPs significantly enriched members of Proteobacteria,Bacteroidetes,and Actinobacteria,as well as the bacteria associated with plastic-degrading and human diseases on their surface,suggesting that microbial communities on MPs may promote MPs degradation and the spread of diseases,posing potential risk to mangrove ecosystems and human health.Although bacteria on MPs exhibited a lower diversity,the co-occurrence network analysis indicated that network of bacteria colonized on MPs was bigger and more complex than those of mangrove sediment,illustrating that MPs can act as a distinct habitat in this special ecosystem.This study provides a new perspective for increasing our understanding of microplastic pollution in mangrove ecosystems.
基金supported by the National Basic Research Program of China(2010CB428903)the Chinese offshore Investigation and Assessment Program(908-01-BC06)+5 种基金the National Marine Public Welfare Research Project of China(201305043-3)the Innovative Team of Key Science and Technology on Marine Aquaculture of Zhejiang Province(2010R50025)the Marine Science Foundation of State Oceanic Administration for Youth(2013140)the National Natural Science Foundation of China(41306112)the Zhejiang Provincial Natural Science Foundation(LY13D060004)the Basic Scientific Research Fundof SIO,China(JG1 311,JG1312)
文摘The distributions of N utilizing bacteria (denitrifying bacteria and ammonifying bacteria) ,P utilizing bacteria (organic phosphobacteria and inorganic phosphobacteria) and heterotrophic bacteria in the Changjiang Estuary,and the roles of main environmental factors in distributing bacteria,are explored with observations from two cruises in June and August 2006.Comparisons between the two important periods of initial hypoxia phase (June) and developed hypoxia phase (August) show differences in both bacterial distributions and the associated main environmental factors.First,the primary group of ammonifying bacteria has larger magnitude with spatial maximum value in the hypoxic stations related to sediment in August.The phosphobacterial abundance and detection rates in August are much lower than those in June,but the denitrifying bacterial abundance becomes greater in August.However,the difference of heterotrophic bacterial abundance between June and August is not obvious.Second,main environmental factors influencing bacteria vary from initial hypoxia phase to developed hypoxia phase.Two parameters (salinity and NO3) in surface water and five environmental parameters (pH,salinity,PO43,NO3and temperature) in bottom water and surface sediment play major roles in the bacterial abundance in June,while different parameter combinations (salinity and PO43) in surface water and different parameter combinations (DO,DOC,NO3,PO43 and pH) in bottom water and surface sediment play major roles in August.Moreover,the bottom bacteria distributions in area south of 31 N are related to the position of the Taiwan Warm Current in June.The bacterial abundance and distribution may respond to the environmental change in the hypoxia processes of initial phase and developed phase.During the hypoxia processes,the whole structure of bacterial functional groups probably turns to different states,causing the recycling of nutrient regeneration and aggravating hypoxia regionally.
基金This work was supported in part by the Knowledge Innovation Engineering Action,the Chinese Academy of Sciences(KZCX2-SW-416)the National Natural Science Foundation of China(Grant No.20225722).
文摘The potential ecotoxicologial risks of methamidophos,copper,and their combinations on microbial community of black soil ecosystem in the Northeast China were assessed in species richness and structures by using 16S rDNA-PCR-DGGE analysis approach,and functional characteristics at community levels by using BIOLOG^(GN) system analysis method as well as two conventional methods(DHA and SIR).All results of DGGE banding fingerprint patterns(amplified by bacterial specific 16S rDNA V_(3) high variable region universal primer)indicated that the species richness of bacterial community in tested soil was significantly decreased to different extents by using different concentrations of single methamidophos,copper,especially some of their combinations had worse effects than their corresponding single factors.In addition,the structures of soil bacterial community had been disturbed under all stresses applied in this study because of the enrichment of some species and the disappearance of other species from the bacterial community.The effects of the single factors with lower concentrations on the communiy structure were weaker than those with higher concentrations.Moreover,the bacterial community structures under the combined stresses of methamidophos and copper were significantly different from those of control and their corresponding single factors.The change of DHA and carbon source substrate utilizing fingerprint patterns based on BIOLOG^(GN)system were two relatively sensitive directors corresponding to the stress presented in this study.Between methamodophos and copper,there happened the significant joint-toxic actions when they were used in combination on DHA and carbon source substrate utilizing fingerprint patterns of soil bacterial communities.The DHA of soil under the combined stresses was lower than that of the control and that under the single factors,and the BIOLOG^(GN) substrate utilizing patterns of soil treated by combinations were distinctively differentiated from the control and their corresponding single factors.From all of above,the methamidophos,copper,especially their combinations had the clearly potential ecotoxicological risks to influence the natural soil microbial ecological system by changing the structure,richness,and the functional characteristics of microbial community.
基金the National Natural Science Foundation of China(42230407)the National Key R&D Program of China(2016YFC0502900)the Scientific Research Project of Anhui Institute of Environmental Sciences(HKYKY2020-02).
文摘Among many ecological services provided by mangrove ecosystems,soil organic carbon(SOC)storages have recently received much attention owing to the increasing atmospheric partial pressure of dissolved CO_(2)(pCO_(2)).Bacteria are fundamental to ecosystem functions and strongly influence the coupling of coastal carbon,nitrogen,and sulfur cycling in soils.The SOC storage and bacterial communities along a restored mangrove soil chronosequence in the Jiulong River Estuary were explored using the 16S rDNA sequencing technique.The results showed the SOC storage in the 100 cm soil profile was 103.31±5.87 kg C m^(−2)and 93.10±11.28 kg C m^(−2)for mangroves with afforestation ages of 36 and 60 years,respectively.The total nitrogen(TN)and total sulfur(TS)contents exhibited significant correlations with the SOC in the mangrove soils,but only TN and SOC showed significant correlation in tidal flat soils.Although the tidal flats and mangroves occupied the contiguous intertidal zone within several kilometers,the variations in the SOC storage along the restored mangrove soil chronosequence were notably higher.The Functional Annotation of Prokaryotic Taxa(FAPROTAX)database was used to annotate the metabolic functions of the bacteria in the soils.The annotation revealed that only four metabolic functions were enriched with a higher relative abundance of the corresponding bacteria,and these enriched functions were largely associated with sulfate reduction.In addition,the specifically critical bacterial taxa that were associated with the SOC accumulation and nutrient cycling,shaped the distinct metabolic functions,and consequently facilitated the SOC accumulation in the mangrove soils with various afforestation ages.The general homogenization of the microbial community and composition along the intertidal soil chronosequence was primarily driven by the reciprocating tidal flows and geographical contiguity.
基金financially supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(XDA 28060300)the National Key Research and Development Program of China(2019YFC0507601-03)the Applied Basic Research Programs of Liaoning Province(2023JH2/101700353)
文摘Background No-tillage(NT)is a widely used field management to reduce soil erosion and degradation and is suggested to be beneficial for enhancing soil carbon(C)sequestration capacity.Nonetheless,the effects of NT on soil total carbon(TC)content in aeolian sandy soils are not extensively explored,and the underlying mechanisms are not clear.In our field experiments,the influence of NT and conventional tillage(CT)on sandy soil was studied.Methods We estimated the changes in soil TC in response to NT practice in a Cyperus esculentus L.field located at semi-arid Horqin sandy land,China.To unravel the underlying mechanisms,plant traits,soil properties and soil microbial characteristics were measured in parallel.The variations in soil bacterial community structure were investigated by 16S rRNA amplicon sequencing.The functionality of soil bacterial community was predicted based on OTU tables by using PICRUSt2.Results NT increased soil TC content in this sandy agroecosystem within a short-term experimental period,compared to CT.The underlying mechanisms might rely on three aspects.First,NT increased soil TC content through increasing photosynthesis and plant biomass,and thus,the plant-derived dissolved organic C.Second,NT increased the C immobilized in soil microbial biomass by increasing microbial C demands and C use efficiency.Third,NT increased the dominance of oligotrophic members in bacterial communities by decreasing available nutrient levels,which is associated with the recalcitrance and stability of the soil organic carbon.Conclusions The present study enriched our knowledge on the changes in the plant-soil-microbe continuum in response to NT in a semi-arid sandy agroecosystem.Still,this study provides a reference for modifying tillage practices to benefit crop yield as well as soil C sequestration.
