Although ray tracing produces high-fidelity, realistic images, it is considered computationally burdensome when implemented on a high rendering rate system. Perception-driven rendering techniques generate images with ...Although ray tracing produces high-fidelity, realistic images, it is considered computationally burdensome when implemented on a high rendering rate system. Perception-driven rendering techniques generate images with minimal noise and distortion that are generally acceptable to the human visual system, thereby reducing rendering costs. In this paper, we introduce a perception-entropy-driven temporal reusing method to accelerate real-time ray tracing. We first build a just noticeable difference(JND) model to represent the uncertainty of ray samples and image space masking effects. Then, we expand the shading gradient through gradient max-pooling and gradient filtering to enlarge the visual receipt field. Finally, we dynamically optimize reusable time segments to improve the accuracy of temporal reusing. Compared with Monte Carlo ray tracing, our algorithm enhances frames per second(fps) by 1.93× to 2.96× at 8 to 16 samples per pixel, significantly accelerating the Monte Carlo ray tracing process while maintaining visual quality.展开更多
In the field of intelligent education,the integration of artificial intelligence,especially deep learning technologies,has garnered significant attention.Knowledge tracing(KT)plays a pivotal role in this field by pred...In the field of intelligent education,the integration of artificial intelligence,especially deep learning technologies,has garnered significant attention.Knowledge tracing(KT)plays a pivotal role in this field by predicting students’future performance through the analysis of historical interaction data,thereby assisting educators in evaluating knowledgemastery and tailoring instructional strategies.Traditional knowledge tracingmethods,largely based on Recurrent Neural Networks(RNNs)and Transformer models,primarily focus on capturing long-term interaction patterns in sequential data.However,these models may neglect crucial short-term dynamics and other relevant features.This paper introduces a novel approach to knowledge tracing by leveraging a pure Multilayer Perceptron(MLP)architecture.We proposeMixerKT,a knowledge tracing model based on theHyperMixer framework,which uniquely integrates global and localMixer feature extractors.This architecture enables more effective extraction of both long-terminteraction trends and recent learning behaviors,addressing limitations in currentmodels thatmay overlook these key aspects.Empirical evaluations on twowidely-used datasets,ASSIS Tments2009 and Algebra2005,demonstrate that MixerKT consistently outperforms several state-of-the-art models,including DKT,SAKT,and Separated Self-Attentive Neural Knowledge Tracing(SAINT).Specifically,MixerKT achieves higher prediction accuracy,highlighting its effectiveness in capturing the nuances of learners’knowledge states.These results indicate that our model provides a more comprehensive representation of student learning patterns,enhancing the ability to predict future performance with greater precision.展开更多
Nonhuman primates are increasingly being used as animal models in neuroscience research.However,efficient neuronal tracing techniques for labeling motor neurons and primary sensory afferents in the monkey spinal cord ...Nonhuman primates are increasingly being used as animal models in neuroscience research.However,efficient neuronal tracing techniques for labeling motor neurons and primary sensory afferents in the monkey spinal cord are lacking.Here,by injecting the cholera toxin B subunit into the sciatic nerve of a rhesus monkey,we successfully labeled the motor neurons and primary sensory afferents in the lumbar and sacralspinal cord.Labeled alpha motor neurons were located in lamina IX of the L6–S1 segments,which innervate both flexors and extensors.The labeled primary sensory afferents were mainly myelinated Aβfibers that terminated mostly in laminae I and II of the L4–L7 segments.Together with the labeled proprioceptive afferents,the primary sensory afferents formed excitatory synapses with multiple types of spinal neurons.In summary,our methods successfully traced neuronal connections in the monkey spinal cord and can be used in spinal cord studies when nonhuman primates are used.展开更多
Background:Rabies virus(RABV)-derived neuronal tracing tools are extensively applied in retrograde tracing due to their strict retrograde transsynaptic transfer property and low neurotoxicity.However,the RABV infectio...Background:Rabies virus(RABV)-derived neuronal tracing tools are extensively applied in retrograde tracing due to their strict retrograde transsynaptic transfer property and low neurotoxicity.However,the RABV infection and expression of fluorescence products would be gradually cleared while the infected neurons still survive,a phenomenon known as non-cytolytic immune clearance(NCLIC).This phenomenon introduced the risk of fluorescence loss and led to the omission of a subset of neurons that should be labeled,thereby interfering in the analysis of tracing results.Methods:To compensate for the fluorescence loss problem,in this study,we developed a novel marker footprints(MF)mouse,involving a Cre recombinase-dependent red fluorescent reporter system and systemic expression of glycoprotein(G)and ASLV-A receptor(TVA).Using this mouse model combined with the well-developed RABV-EnvA-ΔG-GFP-Cre viral tool,we developed a novel green-to-red spectral labeling strategy.Results:Neurons in the MF mouse could be co-labeled with green fluorescence from the very quick expression of the viral tool and with red fluorescence from the relatively slow expression of the neuron itself,so neurons undergoing NCLIC with green fluorescence loss could be relabeled red.Furthermore,newly infected neurons could be labeled green and other neurons could be labeled yellow due to the temporal expression difference between the two fluorescent proteins.Conclusions:This is the first polysynaptic retrograde tracing labeling strategy that could label neurons using spectral fluorescence colors with only one injection of the viral tool,enabling its application in recognizing the labeling sequence of neurons in brain regions and enhancing the spatiotemporal resolution of neuronal tracing.展开更多
Cell lineage tracing is a key technology for describing the developmental history of individual progenitor cells and assembling them to form a lineage development tree.However,traditional methods have limitations of p...Cell lineage tracing is a key technology for describing the developmental history of individual progenitor cells and assembling them to form a lineage development tree.However,traditional methods have limitations of poor stability and insufficient reso-lution.As an efficient and flexible gene editing tool,CRISPR-Cas9 system has been widely used in biological research.Furthermore,CRISPR-Cas9 gene editing-based tracing methods can introduce fluorescent proteins,reporter genes,or DNA barcodes for high-throughput sequencing,enabling precise lineage analysis,significantly im-proving precision and resolution,and expanding its application range.In this review,we summarize applications of CRISPR-Cas9 system in cell lineage tracing,with special emphasis on its successful applications in traditional model animals(e.g.,zebrafish and mice),large animal models(pigs),and human cells or organoids.We also discussed its potential prospects and challenges in xenotransplantation and regenerative medicine.展开更多
The opening of the Central South Atlantic and the consequent formation of the eastern Brazilian continental margin was marked by a complex history of mafic magmatism,carbonate sedimentation,and deposition of a thick s...The opening of the Central South Atlantic and the consequent formation of the eastern Brazilian continental margin was marked by a complex history of mafic magmatism,carbonate sedimentation,and deposition of a thick salt layer.The carbonates underlying the salt layer(pre-salt carbonates)were formed in restricted lacustrine basins.Here,the timing and fluid sources of deposition,diagenetic,and hydrothermal alterations of the pre-salt carbonate rocks are defined through in-situ U-Pb dating,87Sr/86Sr,and trace element analyses of samples from the Santos Basin.The very alkaline nature of the Aptian lake(s)produced characteristically unique and widely distributed carbonate rocks such as Mg-clays with calcite spherulite and calcite crystal shrub limestones transitioning laterally and vertically into travertines formed by hydrothermal pulses during basin evolution.Hydrothermalism caused extensive replacement,dissolution,and calcite cementation.REE+Y PAAS-normalised patterns and 87Sr/86Sr ratios indicate that deposition/eo-diagenesis of the primary carbonates occurred in a lacustrine environment primarily controlled by evaporation,pH,and continental water source,with 2%–10%hydrothermal fluid input.Trace elements and Sr-isotope of travertines and burial diagenetic phases show that they are produced from a hot mixture of mafic/mantle-derived fluids and dissolution/alteration of older carbonate formations.U-Pb dating indicates that carbonate deposition occurred between 124.8±2.6 Ma and 120.0±1.6 Ma,earlier than previously proposed,followed closely by the circulation of hydrothermal fluids.Replacement and cementation ages range from 120.5±2.4 Ma to 80.4±2.4 Ma.展开更多
Unraveling the lineage relationships of all descendants from a zygote is fundamental to advancing our understanding of developmental and stem cell biology.However,existing cell barcoding technologies in zebrafish lack...Unraveling the lineage relationships of all descendants from a zygote is fundamental to advancing our understanding of developmental and stem cell biology.However,existing cell barcoding technologies in zebrafish lack the resolution to capture the majority of cell divisions during embryogenesis.A recently developed method,a substitution mutation-aided lineage-tracing system(SMALT),successfully reconstructed high-resolution cell phylogenetic trees for Drosophila melanogaster.Here,we implement the SMALT system in zebrafish,recording a median of 14 substitution mutations on a one-kilobase-pair barcoding sequence for one-day post-fertilization embryos.Leveraging this system,we reconstruct four cell lineage trees for zebrafish fin cells,encompassing both original and regenerated fin.Each tree consists of hundreds of internal nodes with a median bootstrap support of 99%.Analysis of the obtained cell lineage trees reveals that regenerated fin cells mainly originate from cells in the same part of the fins.Through multiple times sampling germ cells from the same individual,we show the stability of the germ cell pool and the early separation of germ cell and somatic cell progenitors.Our system offers the potential for reconstructing high-quality cell phylogenies across diverse tissues,providing valuable insights into development and disease in zebrafish.展开更多
Genetic lineage tracing has been widely employed to investigate cell lineages and fate.However,conventional reporting systems often label the entire cytoplasm,making it challenging to discern cell boundaries.Additiona...Genetic lineage tracing has been widely employed to investigate cell lineages and fate.However,conventional reporting systems often label the entire cytoplasm,making it challenging to discern cell boundaries.Additionally,single Cre-lox P recombination systems have limitations in tracing specific cell populations.This study proposes three reporting systems utilizing Cre,Dre,and Dre+Cre mediated recombination.These systems incorporate td Tomato expression on the cell membrane and Phi YFP expression within the nucleus,allowing for clear observation of the nucleus and membrane.The efficacy of these systems is successfully demonstrated by labeling cardiomyocytes and hepatocytes.The potential for dynamic visualization of the cell membrane is showcased using intravital imaging microscopy or threedimensional imaging.Furthermore,by combining this dual recombinase system with the Pro Tracer system,hepatocyte proliferation is traced with enhanced precision.This reporting system holds significant importance for advancing the understanding of cell fate studies in development,homeostasis,and diseases.展开更多
This paper presents a gradient-descent travel time tomography method for solving the acoustictype velocity model inversion problem.Similarly to the adjoint-state method,the proposed method is based on the Eikonal equa...This paper presents a gradient-descent travel time tomography method for solving the acoustictype velocity model inversion problem.Similarly to the adjoint-state method,the proposed method is based on the Eikonal equation,enabling simultaneous calculation of contributions from all common-source receivers to the gradient.This overcomes the inefficiency inherent in conventional travel time tomography methods,which rely on a two-point ray tracing process.By directly calculating Fréchet derivatives,our method avoids the complex derivation processes associated with the adjoint-state method.The key to calculating the Fréchet derivatives is to calculate a so-called ray-path term.Consequently,compared to the adjoint-state method,the proposed method can explicitly obtain the ray paths,resulting in a more concise and intuitive derivation process.Furthermore,our method retains the benefits of the adjoint-state method,such as speed,low memory usage,and robustness.This paper focuses on elucidating the principles and algorithms for calculating the raypath term based on the fast sweeping method.The algorithms could be further speeded up by using parallel computational techniques.Synthetic tests demonstrate that our proposed travel time tomographic method accurately calculates ray paths,regardless of the complexity of the model and recording geometry.展开更多
An advanced method for rapidly computing holograms of large three-dimensional(3D)objects combines backward ray tracing with adaptive resolution wavefront recording plane(WRP)and adaptive angular spectrum propagation.I...An advanced method for rapidly computing holograms of large three-dimensional(3D)objects combines backward ray tracing with adaptive resolution wavefront recording plane(WRP)and adaptive angular spectrum propagation.In the initial phase,a WRP with adjustable resolution and sampling interval based on the object’s size is defined to capture detailed information from large 3D objects.The second phase employs an adaptive angular spectrum method(ASM)to efficiently compute the propagation from the large-sized WRP to the small-sized computer-generated hologram(CGH).The computation process is accelerated using CUDA and OptiX.Optical experiments confirm that the algorithm can generate high-quality holograms with shadow and occlusion effects at a resolution of 1024×1024 in 29 ms.展开更多
Ray tracing is a computer graphics method that renders images realistically. As the name suggests, this technique primarily traces the path of light rays interacting with objects in a scene [1], permitting the calcula...Ray tracing is a computer graphics method that renders images realistically. As the name suggests, this technique primarily traces the path of light rays interacting with objects in a scene [1], permitting the calculation of lighting and reflecting impact [2]. As ray tracing is a time-consuming process, the need for parallelization to solve this problem arises. One downside of this solution is the existence of race conditions. In this work, we explore and experiment with a different, well-known solution for this race condition. Starting with the introduction and the background section, a brief overview of the topic is followed by a detailed part of how the race conditions may occur in the case of the ray tracing algorithm. Continuing with the methods and results section, we have used OpenMP to parallelize the Ray tracing algorithm with the different compiler directives critical, atomic, and first-private. Hence, it concluded that both critical and atomic are not efficient solutions to produce a good-quality picture, but first-private succeeded in producing a high-quality picture.展开更多
To address the problem of subdividing inflexible rectangular grid models and their poor definition of velocity interfaces,we propose a complex structure triangular net for a minimum traveltime ray tracing global algor...To address the problem of subdividing inflexible rectangular grid models and their poor definition of velocity interfaces,we propose a complex structure triangular net for a minimum traveltime ray tracing global algorithm.Our procedure is：（1） Subdivide a triangle grid based on the Delaunay triangular subdivision criterion and the relationships of the points,lines,and the surfaces in the subdividing area.（2） Define the topology relationships and related concepts of triangular unit ray tracing.（3） The source point and wave arrival points at any time compose the propagating plane wave and the minimum traveltime and secondary source positions are calculated during the plane wave propagation.We adopt the hyperbolic approximation global algorithm for secondary source retrieving.（4） By minimum traveltime ray tracing,collect the path from receiver to source points with the neighborhood point＇s traveltime and the direction of the secondary source.Numerical simulation examples are given to test the algorithm.The results show that the triangular net ray tracing method demonstrates model subdivision flexibility,precise velocity discontinuity interfaces,and accurate computations.展开更多
A new method is presented for the segmentation of pulmonary parenchyma. The proposed method is based on the area calculation of different objects in the image. The main purpose of the proposed algorithm is the segment...A new method is presented for the segmentation of pulmonary parenchyma. The proposed method is based on the area calculation of different objects in the image. The main purpose of the proposed algorithm is the segment of the lungs images from the computer tomography(CT) images. The original image is binarized using the bit-plane slicing technique and among the different images the best binarized image is chosen. After binarization, the labeling is done and the area of each label is calculated from which the next level of binarized image is obtained. Then, the boundary tracing algorithm is applied to get another level of binarized image. The proposed method is able to extract lung region from the original images. The experimental results show the significance of the proposed method.展开更多
[Objective] The research aimed to study the application of chemical tracing experiment technique in leakage detection of hydraulic engineering.[Method] According to the current situation of Sanyuan Western Suburb Rese...[Objective] The research aimed to study the application of chemical tracing experiment technique in leakage detection of hydraulic engineering.[Method] According to the current situation of Sanyuan Western Suburb Reservoir in Xianyang City of Shaanxi Province,three sections （L1,L2 and L3） were set.KI was selected as the chemical tracer to carry out the tracing and detection research.[Result] There was no obvious leakage phenomenon in L1,L2 and L3 sections.The impermeability of rock in some dam abutments was bad.[Conclusion] The leakage reason of Western Suburb Reservoir was that the impermeability of rock in some dam abutments couldn’t satisfy seepage requirement.After the reservoir was put into operation,the water level in front of dam rose,and the ground water level of dam abutment also rose.The penetration water pressure correspondingly increased,and the water content of bank slope at the downstream of dam increased.展开更多
A central objective in deciphering the nervous system in health and disease is to define the connections of neurons. The propensity of neurotropic viruses to spread among synaptically-linked neurons makes them ideal f...A central objective in deciphering the nervous system in health and disease is to define the connections of neurons. The propensity of neurotropic viruses to spread among synaptically-linked neurons makes them ideal for mapping neural circuits. So far, several classes of viral neuronal tracers have become available and provide a powerful toolbox for delineating neural networks. In this paper, we review the recent developments of neurotropic viral tracers and highlight their unique properties in revealing patterns of neuronal connections.展开更多
The safety of safe crop products （SCP） is critical to maintain people＇s health and living standard. With the global efforts on the improvement of the traceability of food products, it is inevitable to establish cor...The safety of safe crop products （SCP） is critical to maintain people＇s health and living standard. With the global efforts on the improvement of the traceability of food products, it is inevitable to establish corresponding traceability systems to monitor the safety of crop products in China. In this article, the supply chain pattern of SCP in China has been analyzed and its spatial characters have been described in detail. The study deals with on how to relate traceability technology with GIS, and on how to trace and retrace the safety of SCP using the function of excellent spatial representation, spatial locating, and spatial analysis provided in GIS, which has been discussed from several aspects, such as coding technique of traceability information, transferring technique of traceability information, spatialization of traceability information, and application integration of traceability system. A pilot study was carried out to present the basic functions of the system, which provided an efficient and credible way to trace and retrace the safety of SCP in a real supply chain. An innovative idea has been brought forward for how to establish an efficient, credible, applied traceability system of SCP.展开更多
Introduction:Contact tracing has been a key tool to contain the spread of diseases and was widely used by countries during the COVID-19 pandemic.However,evaluating the effectiveness of contact tracing has been challen...Introduction:Contact tracing has been a key tool to contain the spread of diseases and was widely used by countries during the COVID-19 pandemic.However,evaluating the effectiveness of contact tracing has been challenging.Approaches to contact tracing were diverse and country-dependent,with operations utilizing different tracing methods under varied environments.To provide guidance on contact tracing for future preparedness,we assessed the effectiveness of contact tracing methods under varied environments using Singapore's population structure and COVID-19 as the disease model.Methods:We developed a transmission network model using Singapore's contact tracing data and the characteristics of COVID-19 disease.We explored three different tracing methods that could be employed by contact tracing operations:forward tracing,extended tracing and cluster tracing.The forward tracing method covered the period starting two days before case isolation,the extended tracing method covered the period starting 16 days before case isolation,and the cluster tracing method combined forward tracing with cluster identification.Contact tracing operations traced detected cases from surveillance and issued interventions for identified contacts,and we constructed combinations of varied scenarios to replicate variability during pandemic,namely low case-ascertainment or high case-ascertainment and either testing of contacts or quarantine of contacts.We examined the impact of varied contact tracing operations on disease transmission and provider costs.Results:Model simulations showed that the effectiveness of contact tracing methods varied under the four different scenarios.Firstly,under low case-ascertainment with testing of contacts,contact tracing reduced transmission by 12%-22%,with provider costs ranging between US$2943.56 to US$5226.82 per infection prevented.The most effective tracing method to control infection was cluster tracing,followed by extended tracing and forward tracing.Secondly,under low case-ascertainment with quarantine of contacts,transmission was reduced by 46%-62%,with provider costs below US$4000 per infection prevented.The cluster method reduced transmission by 62%,enough to bring the reproduction number to close to unity and was the least costly.Extended tracing reduced transmission by 50%but costed the most,while forward tracing reduced transmission by 46%.Thirdly,under high case-ascertainment with testing of contacts,the average transmission was reduced by 20%-26%,with provider costs to prevent an infection ranging between US$1872.72 to US$3165.09.There was less variability between tracing methods,with cluster tracing reducing transmission the most,followed by extended tracing and forward tracing.Lastly,under high case-ascertainment and quarantine of contacts,contact tracing was the most effective,with provider costs below US$800 per infection prevented.All tracing methods were equally effective in disease containment,bringing the reproduction number below unity and stopping disease transmission early.Discussion:We conclude that contact tracing operated most effectively when implemented with high case-ascertainment rates and quarantine of contacts;disease transmission is stopped early,and the low number of contacts enable tracing operations to be more manageable and less costly.However,the pandemic situation can be dynamic,with fluctuations in resources available for case-ascertainment and quarantine adherence,which can impact the effectiveness of contact tracing.Adapting contact tracing methods to the situation can optimize disease control.Therefore,it is recommended to develop a flexible contact tracing approach that facilitates strategy switching based on resource availability and the skills of tracing operations.展开更多
Regenerating functional new neurons in the adult mammalian central nervous system has been proven to be very challenging due to the inability of neurons to divide and repopulate themselves after neuronal loss.Glial ce...Regenerating functional new neurons in the adult mammalian central nervous system has been proven to be very challenging due to the inability of neurons to divide and repopulate themselves after neuronal loss.Glial cells,on the other hand,can divide and repopulate themselves under injury or diseased conditions.We have previously reported that ectopic expression of NeuroD1 in dividing glial cells can directly convert them into neurons.Here,using astrocytic lineage-tracing reporter mice(Aldh1l1-CreERT2 mice crossing with Ai14 mice),we demonstrate that lineage-traced astrocytes can be successfully converted into NeuNpositive neurons after expressing NeuroD1 through adeno-associated viruses.Retroviral expression of NeuroD1 further confirms that dividing glial cells can be converted into neurons.Importantly,we demonstrate that for in vivo cell conversion study,using a safe level of adeno-associated virus dosage(10^10–10^12 gc/mL,1μL)in the rodent brain is critical to avoid artifacts caused by toxic dosage,such as that used in a recent bioRxiv study(2×10^13 gc/mL,1μL,mouse cortex).For therapeutic purpose under injury or diseased conditions,or for non-human primate studies,adeno-associated virus dosage needs to be optimized through a series of dose-finding experiments.Moreover,for future in vivo gliato-neuron conversion studies,we recommend that the adeno-associated virus results are further verified with retroviruses that mainly express transgenes in dividing glial cells in order to draw solid conclusions.The study was approved by the Laboratory Animal Ethics Committee of Jinan University,China(approval No.IACUC-20180330-06)on March 30,2018.展开更多
Neurons are highly interwoven to form intricate neural circuits that underlie the diverse functions of the brain.Dissecting the anatomical organization of neural circuits is key to deciphering how the brain processes ...Neurons are highly interwoven to form intricate neural circuits that underlie the diverse functions of the brain.Dissecting the anatomical organization of neural circuits is key to deciphering how the brain processes information,produces thoughts,and instructs behaviors.Over the past decades,recombinant viral vectors have become the most commonly used tracing tools to define circuit architecture.In this review,we introduce the current categories of viral tools and their proper application in circuit tracing.We further discuss some advances in viral tracing strategy and prospective innovations of viral tools for future study.展开更多
基金supported by the National Natural Science Foundation of China (No.U19A2063)the Jilin Provincial Science&Technology Development Program of China (No.20230201080GX)。
文摘Although ray tracing produces high-fidelity, realistic images, it is considered computationally burdensome when implemented on a high rendering rate system. Perception-driven rendering techniques generate images with minimal noise and distortion that are generally acceptable to the human visual system, thereby reducing rendering costs. In this paper, we introduce a perception-entropy-driven temporal reusing method to accelerate real-time ray tracing. We first build a just noticeable difference(JND) model to represent the uncertainty of ray samples and image space masking effects. Then, we expand the shading gradient through gradient max-pooling and gradient filtering to enlarge the visual receipt field. Finally, we dynamically optimize reusable time segments to improve the accuracy of temporal reusing. Compared with Monte Carlo ray tracing, our algorithm enhances frames per second(fps) by 1.93× to 2.96× at 8 to 16 samples per pixel, significantly accelerating the Monte Carlo ray tracing process while maintaining visual quality.
基金supported by National Natural Science Foundation of China(Nos.62266054 and 62166050)Key Program of Fundamental Research Project of Yunnan Science and Technology Plan(No.202201AS070021)+2 种基金Yunnan Fundamental Research Projects(No.202401AT070122)Yunnan International Joint Research and Development Center of China-Laos-Thailand Educational Digitalization(No.202203AP140006)Scientific Research Foundation of Yunnan Provincial Department of Education(No.2024Y159).
文摘In the field of intelligent education,the integration of artificial intelligence,especially deep learning technologies,has garnered significant attention.Knowledge tracing(KT)plays a pivotal role in this field by predicting students’future performance through the analysis of historical interaction data,thereby assisting educators in evaluating knowledgemastery and tailoring instructional strategies.Traditional knowledge tracingmethods,largely based on Recurrent Neural Networks(RNNs)and Transformer models,primarily focus on capturing long-term interaction patterns in sequential data.However,these models may neglect crucial short-term dynamics and other relevant features.This paper introduces a novel approach to knowledge tracing by leveraging a pure Multilayer Perceptron(MLP)architecture.We proposeMixerKT,a knowledge tracing model based on theHyperMixer framework,which uniquely integrates global and localMixer feature extractors.This architecture enables more effective extraction of both long-terminteraction trends and recent learning behaviors,addressing limitations in currentmodels thatmay overlook these key aspects.Empirical evaluations on twowidely-used datasets,ASSIS Tments2009 and Algebra2005,demonstrate that MixerKT consistently outperforms several state-of-the-art models,including DKT,SAKT,and Separated Self-Attentive Neural Knowledge Tracing(SAINT).Specifically,MixerKT achieves higher prediction accuracy,highlighting its effectiveness in capturing the nuances of learners’knowledge states.These results indicate that our model provides a more comprehensive representation of student learning patterns,enhancing the ability to predict future performance with greater precision.
基金supported by a grant from Ministry of Science and Technology China,No.2022ZD0204704(to WW)the National Natural Science Foundation of China,No.82301572(to XZ)the China Postdoctoral Science Foundation,No.2023M731202(to XZ)。
文摘Nonhuman primates are increasingly being used as animal models in neuroscience research.However,efficient neuronal tracing techniques for labeling motor neurons and primary sensory afferents in the monkey spinal cord are lacking.Here,by injecting the cholera toxin B subunit into the sciatic nerve of a rhesus monkey,we successfully labeled the motor neurons and primary sensory afferents in the lumbar and sacralspinal cord.Labeled alpha motor neurons were located in lamina IX of the L6–S1 segments,which innervate both flexors and extensors.The labeled primary sensory afferents were mainly myelinated Aβfibers that terminated mostly in laminae I and II of the L4–L7 segments.Together with the labeled proprioceptive afferents,the primary sensory afferents formed excitatory synapses with multiple types of spinal neurons.In summary,our methods successfully traced neuronal connections in the monkey spinal cord and can be used in spinal cord studies when nonhuman primates are used.
基金Hubei Natural Science Foundation of China,Grant/Award Number:2024AFB593。
文摘Background:Rabies virus(RABV)-derived neuronal tracing tools are extensively applied in retrograde tracing due to their strict retrograde transsynaptic transfer property and low neurotoxicity.However,the RABV infection and expression of fluorescence products would be gradually cleared while the infected neurons still survive,a phenomenon known as non-cytolytic immune clearance(NCLIC).This phenomenon introduced the risk of fluorescence loss and led to the omission of a subset of neurons that should be labeled,thereby interfering in the analysis of tracing results.Methods:To compensate for the fluorescence loss problem,in this study,we developed a novel marker footprints(MF)mouse,involving a Cre recombinase-dependent red fluorescent reporter system and systemic expression of glycoprotein(G)and ASLV-A receptor(TVA).Using this mouse model combined with the well-developed RABV-EnvA-ΔG-GFP-Cre viral tool,we developed a novel green-to-red spectral labeling strategy.Results:Neurons in the MF mouse could be co-labeled with green fluorescence from the very quick expression of the viral tool and with red fluorescence from the relatively slow expression of the neuron itself,so neurons undergoing NCLIC with green fluorescence loss could be relabeled red.Furthermore,newly infected neurons could be labeled green and other neurons could be labeled yellow due to the temporal expression difference between the two fluorescent proteins.Conclusions:This is the first polysynaptic retrograde tracing labeling strategy that could label neurons using spectral fluorescence colors with only one injection of the viral tool,enabling its application in recognizing the labeling sequence of neurons in brain regions and enhancing the spatiotemporal resolution of neuronal tracing.
基金supported by Institute of Laboratory Animal Sciences,Chinese Academy of Medical Sciences and Comparative Medicine Center,Peking Union Medical College,Collaborative Innovation Program of the Chinese Academy of Sciences(22SH19)Nonprofit Central Research Institute Fund of Chinese Academy of Medical Sciences(2023-PT180-01).
文摘Cell lineage tracing is a key technology for describing the developmental history of individual progenitor cells and assembling them to form a lineage development tree.However,traditional methods have limitations of poor stability and insufficient reso-lution.As an efficient and flexible gene editing tool,CRISPR-Cas9 system has been widely used in biological research.Furthermore,CRISPR-Cas9 gene editing-based tracing methods can introduce fluorescent proteins,reporter genes,or DNA barcodes for high-throughput sequencing,enabling precise lineage analysis,significantly im-proving precision and resolution,and expanding its application range.In this review,we summarize applications of CRISPR-Cas9 system in cell lineage tracing,with special emphasis on its successful applications in traditional model animals(e.g.,zebrafish and mice),large animal models(pigs),and human cells or organoids.We also discussed its potential prospects and challenges in xenotransplantation and regenerative medicine.
基金C.Lana and F.F.Alkmim benefit from the Brazilian National Research Council(CNPq)research grants 3073353/2019-2 and 311543/2020-0.C.Lana,F.F.Alkmim,and Maria Eugênia Souza are part of the Instituto GeoAtlântico,a National Institute of Science and Technology,CNPq-Brazil process 405653/2022-0We acknowledge Petrobras’s support during the investigation and permission to publish this study.I.Figueiredo acknowledged the Brazilian Federal Agency for Support and Evaluation of Graduate Education(CAPES)for Master's scholarship 88887.816343/2023-00.
文摘The opening of the Central South Atlantic and the consequent formation of the eastern Brazilian continental margin was marked by a complex history of mafic magmatism,carbonate sedimentation,and deposition of a thick salt layer.The carbonates underlying the salt layer(pre-salt carbonates)were formed in restricted lacustrine basins.Here,the timing and fluid sources of deposition,diagenetic,and hydrothermal alterations of the pre-salt carbonate rocks are defined through in-situ U-Pb dating,87Sr/86Sr,and trace element analyses of samples from the Santos Basin.The very alkaline nature of the Aptian lake(s)produced characteristically unique and widely distributed carbonate rocks such as Mg-clays with calcite spherulite and calcite crystal shrub limestones transitioning laterally and vertically into travertines formed by hydrothermal pulses during basin evolution.Hydrothermalism caused extensive replacement,dissolution,and calcite cementation.REE+Y PAAS-normalised patterns and 87Sr/86Sr ratios indicate that deposition/eo-diagenesis of the primary carbonates occurred in a lacustrine environment primarily controlled by evaporation,pH,and continental water source,with 2%–10%hydrothermal fluid input.Trace elements and Sr-isotope of travertines and burial diagenetic phases show that they are produced from a hot mixture of mafic/mantle-derived fluids and dissolution/alteration of older carbonate formations.U-Pb dating indicates that carbonate deposition occurred between 124.8±2.6 Ma and 120.0±1.6 Ma,earlier than previously proposed,followed closely by the circulation of hydrothermal fluids.Replacement and cementation ages range from 120.5±2.4 Ma to 80.4±2.4 Ma.
基金supported by the National Key R&D Program of China(2021YFA1302500 and 2021YFA1302501)the National Natural Science Foundation of China(32293190,32293191,31970570,and 32200492).
文摘Unraveling the lineage relationships of all descendants from a zygote is fundamental to advancing our understanding of developmental and stem cell biology.However,existing cell barcoding technologies in zebrafish lack the resolution to capture the majority of cell divisions during embryogenesis.A recently developed method,a substitution mutation-aided lineage-tracing system(SMALT),successfully reconstructed high-resolution cell phylogenetic trees for Drosophila melanogaster.Here,we implement the SMALT system in zebrafish,recording a median of 14 substitution mutations on a one-kilobase-pair barcoding sequence for one-day post-fertilization embryos.Leveraging this system,we reconstruct four cell lineage trees for zebrafish fin cells,encompassing both original and regenerated fin.Each tree consists of hundreds of internal nodes with a median bootstrap support of 99%.Analysis of the obtained cell lineage trees reveals that regenerated fin cells mainly originate from cells in the same part of the fins.Through multiple times sampling germ cells from the same individual,we show the stability of the germ cell pool and the early separation of germ cell and somatic cell progenitors.Our system offers the potential for reconstructing high-quality cell phylogenies across diverse tissues,providing valuable insights into development and disease in zebrafish.
基金supported by the National Key Research&Development Program of China(2021YFA0805100,2023YFA1800700,2019YFA0110403,2019YFA0802000)the National Science Foundation of China(82088101,32370885,92368103,32370897)the Westlake Education Foundation,and the Benyuan Charity Fund,Research Funds of Hangzhou Institute for Advanced Study(2022ZZ01015 and B04006C01600515)。
文摘Genetic lineage tracing has been widely employed to investigate cell lineages and fate.However,conventional reporting systems often label the entire cytoplasm,making it challenging to discern cell boundaries.Additionally,single Cre-lox P recombination systems have limitations in tracing specific cell populations.This study proposes three reporting systems utilizing Cre,Dre,and Dre+Cre mediated recombination.These systems incorporate td Tomato expression on the cell membrane and Phi YFP expression within the nucleus,allowing for clear observation of the nucleus and membrane.The efficacy of these systems is successfully demonstrated by labeling cardiomyocytes and hepatocytes.The potential for dynamic visualization of the cell membrane is showcased using intravital imaging microscopy or threedimensional imaging.Furthermore,by combining this dual recombinase system with the Pro Tracer system,hepatocyte proliferation is traced with enhanced precision.This reporting system holds significant importance for advancing the understanding of cell fate studies in development,homeostasis,and diseases.
基金supported by 14th Five-Year Plan major science and technology projects(no.KJGG2022-0201)。
文摘This paper presents a gradient-descent travel time tomography method for solving the acoustictype velocity model inversion problem.Similarly to the adjoint-state method,the proposed method is based on the Eikonal equation,enabling simultaneous calculation of contributions from all common-source receivers to the gradient.This overcomes the inefficiency inherent in conventional travel time tomography methods,which rely on a two-point ray tracing process.By directly calculating Fréchet derivatives,our method avoids the complex derivation processes associated with the adjoint-state method.The key to calculating the Fréchet derivatives is to calculate a so-called ray-path term.Consequently,compared to the adjoint-state method,the proposed method can explicitly obtain the ray paths,resulting in a more concise and intuitive derivation process.Furthermore,our method retains the benefits of the adjoint-state method,such as speed,low memory usage,and robustness.This paper focuses on elucidating the principles and algorithms for calculating the raypath term based on the fast sweeping method.The algorithms could be further speeded up by using parallel computational techniques.Synthetic tests demonstrate that our proposed travel time tomographic method accurately calculates ray paths,regardless of the complexity of the model and recording geometry.
基金Project supported by the Special Project of Central Government Guiding Local Science and Technology Development in Beijing 2020(Grant No.Z201100004320006).
文摘An advanced method for rapidly computing holograms of large three-dimensional(3D)objects combines backward ray tracing with adaptive resolution wavefront recording plane(WRP)and adaptive angular spectrum propagation.In the initial phase,a WRP with adjustable resolution and sampling interval based on the object’s size is defined to capture detailed information from large 3D objects.The second phase employs an adaptive angular spectrum method(ASM)to efficiently compute the propagation from the large-sized WRP to the small-sized computer-generated hologram(CGH).The computation process is accelerated using CUDA and OptiX.Optical experiments confirm that the algorithm can generate high-quality holograms with shadow and occlusion effects at a resolution of 1024×1024 in 29 ms.
文摘Ray tracing is a computer graphics method that renders images realistically. As the name suggests, this technique primarily traces the path of light rays interacting with objects in a scene [1], permitting the calculation of lighting and reflecting impact [2]. As ray tracing is a time-consuming process, the need for parallelization to solve this problem arises. One downside of this solution is the existence of race conditions. In this work, we explore and experiment with a different, well-known solution for this race condition. Starting with the introduction and the background section, a brief overview of the topic is followed by a detailed part of how the race conditions may occur in the case of the ray tracing algorithm. Continuing with the methods and results section, we have used OpenMP to parallelize the Ray tracing algorithm with the different compiler directives critical, atomic, and first-private. Hence, it concluded that both critical and atomic are not efficient solutions to produce a good-quality picture, but first-private succeeded in producing a high-quality picture.
基金the National Natural Science Foundation of China(Grant Nos.50974081,50774051, 51034003)the Foundation for the Author of National Excellent Doctoral Dissertation of PR China(Grant No.200958)+1 种基金the Program for Changjiang Scholars and Innovative Research Team in University(Grant No.IRT0843)the Open Research Fund Program of the State Key Laboratory of Coal Resources and Safe Mining(China University of Mining and Technology, Beijing)(No.2007-07)
文摘To address the problem of subdividing inflexible rectangular grid models and their poor definition of velocity interfaces,we propose a complex structure triangular net for a minimum traveltime ray tracing global algorithm.Our procedure is：（1） Subdivide a triangle grid based on the Delaunay triangular subdivision criterion and the relationships of the points,lines,and the surfaces in the subdividing area.（2） Define the topology relationships and related concepts of triangular unit ray tracing.（3） The source point and wave arrival points at any time compose the propagating plane wave and the minimum traveltime and secondary source positions are calculated during the plane wave propagation.We adopt the hyperbolic approximation global algorithm for secondary source retrieving.（4） By minimum traveltime ray tracing,collect the path from receiver to source points with the neighborhood point＇s traveltime and the direction of the secondary source.Numerical simulation examples are given to test the algorithm.The results show that the triangular net ray tracing method demonstrates model subdivision flexibility,precise velocity discontinuity interfaces,and accurate computations.
基金supported (in part) by research funding from Chosun University, Korea, 2013
文摘A new method is presented for the segmentation of pulmonary parenchyma. The proposed method is based on the area calculation of different objects in the image. The main purpose of the proposed algorithm is the segment of the lungs images from the computer tomography(CT) images. The original image is binarized using the bit-plane slicing technique and among the different images the best binarized image is chosen. After binarization, the labeling is done and the area of each label is calculated from which the next level of binarized image is obtained. Then, the boundary tracing algorithm is applied to get another level of binarized image. The proposed method is able to extract lung region from the original images. The experimental results show the significance of the proposed method.
文摘[Objective] The research aimed to study the application of chemical tracing experiment technique in leakage detection of hydraulic engineering.[Method] According to the current situation of Sanyuan Western Suburb Reservoir in Xianyang City of Shaanxi Province,three sections （L1,L2 and L3） were set.KI was selected as the chemical tracer to carry out the tracing and detection research.[Result] There was no obvious leakage phenomenon in L1,L2 and L3 sections.The impermeability of rock in some dam abutments was bad.[Conclusion] The leakage reason of Western Suburb Reservoir was that the impermeability of rock in some dam abutments couldn’t satisfy seepage requirement.After the reservoir was put into operation,the water level in front of dam rose,and the ground water level of dam abutment also rose.The penetration water pressure correspondingly increased,and the water content of bank slope at the downstream of dam increased.
基金supported by the National Natural Science Foundation of China (31671119 and 31871090)the Shenzhen Science and Technology Innovation Commission (JCYJ20160428164440255, JCYJ20170413162938668, JCYJ20170818155056369, and JCYJ20170307170742519)+3 种基金the Shenzhen Discipline Construction Project for Neurobiology (DRCSM [2016]1379)the Japan Society for the Promotion of Science KAKENHI (JP18K08494) the Japan Science and Technology Agency PRESTO (JPMJPR1784)the Ono Medical Research Foundation, and the Novartis Foundation (Japan) for the Promotion of Science
文摘A central objective in deciphering the nervous system in health and disease is to define the connections of neurons. The propensity of neurotropic viruses to spread among synaptically-linked neurons makes them ideal for mapping neural circuits. So far, several classes of viral neuronal tracers have become available and provide a powerful toolbox for delineating neural networks. In this paper, we review the recent developments of neurotropic viral tracers and highlight their unique properties in revealing patterns of neuronal connections.
文摘The safety of safe crop products （SCP） is critical to maintain people＇s health and living standard. With the global efforts on the improvement of the traceability of food products, it is inevitable to establish corresponding traceability systems to monitor the safety of crop products in China. In this article, the supply chain pattern of SCP in China has been analyzed and its spatial characters have been described in detail. The study deals with on how to relate traceability technology with GIS, and on how to trace and retrace the safety of SCP using the function of excellent spatial representation, spatial locating, and spatial analysis provided in GIS, which has been discussed from several aspects, such as coding technique of traceability information, transferring technique of traceability information, spatialization of traceability information, and application integration of traceability system. A pilot study was carried out to present the basic functions of the system, which provided an efficient and credible way to trace and retrace the safety of SCP in a real supply chain. An innovative idea has been brought forward for how to establish an efficient, credible, applied traceability system of SCP.
基金supported by the Singapore Ministry of Health's National Medical Research Council under its National Epidemic Preparedness and Response R&D Funding Initiative(MOH-001041)Programme for Research in Epidemic Preparedness And REsponse(PREPARE).
文摘Introduction:Contact tracing has been a key tool to contain the spread of diseases and was widely used by countries during the COVID-19 pandemic.However,evaluating the effectiveness of contact tracing has been challenging.Approaches to contact tracing were diverse and country-dependent,with operations utilizing different tracing methods under varied environments.To provide guidance on contact tracing for future preparedness,we assessed the effectiveness of contact tracing methods under varied environments using Singapore's population structure and COVID-19 as the disease model.Methods:We developed a transmission network model using Singapore's contact tracing data and the characteristics of COVID-19 disease.We explored three different tracing methods that could be employed by contact tracing operations:forward tracing,extended tracing and cluster tracing.The forward tracing method covered the period starting two days before case isolation,the extended tracing method covered the period starting 16 days before case isolation,and the cluster tracing method combined forward tracing with cluster identification.Contact tracing operations traced detected cases from surveillance and issued interventions for identified contacts,and we constructed combinations of varied scenarios to replicate variability during pandemic,namely low case-ascertainment or high case-ascertainment and either testing of contacts or quarantine of contacts.We examined the impact of varied contact tracing operations on disease transmission and provider costs.Results:Model simulations showed that the effectiveness of contact tracing methods varied under the four different scenarios.Firstly,under low case-ascertainment with testing of contacts,contact tracing reduced transmission by 12%-22%,with provider costs ranging between US$2943.56 to US$5226.82 per infection prevented.The most effective tracing method to control infection was cluster tracing,followed by extended tracing and forward tracing.Secondly,under low case-ascertainment with quarantine of contacts,transmission was reduced by 46%-62%,with provider costs below US$4000 per infection prevented.The cluster method reduced transmission by 62%,enough to bring the reproduction number to close to unity and was the least costly.Extended tracing reduced transmission by 50%but costed the most,while forward tracing reduced transmission by 46%.Thirdly,under high case-ascertainment with testing of contacts,the average transmission was reduced by 20%-26%,with provider costs to prevent an infection ranging between US$1872.72 to US$3165.09.There was less variability between tracing methods,with cluster tracing reducing transmission the most,followed by extended tracing and forward tracing.Lastly,under high case-ascertainment and quarantine of contacts,contact tracing was the most effective,with provider costs below US$800 per infection prevented.All tracing methods were equally effective in disease containment,bringing the reproduction number below unity and stopping disease transmission early.Discussion:We conclude that contact tracing operated most effectively when implemented with high case-ascertainment rates and quarantine of contacts;disease transmission is stopped early,and the low number of contacts enable tracing operations to be more manageable and less costly.However,the pandemic situation can be dynamic,with fluctuations in resources available for case-ascertainment and quarantine adherence,which can impact the effectiveness of contact tracing.Adapting contact tracing methods to the situation can optimize disease control.Therefore,it is recommended to develop a flexible contact tracing approach that facilitates strategy switching based on resource availability and the skills of tracing operations.
基金This study was supported by the National Natural Science Foundation of China(No.U1801681,to GC and No.31970906,to WL)Guangdong Science and Technology Department(‘Key technologies for treatment of brain disorders’,No.2018B030332001,to GC)+2 种基金the Natural Science Foundation of Guangdong Province of China(No.2020A1515011079,to WL and No.2020A1515010854,to QW)the internal funding from Jinan University(No.21616110,to GC)the Young Scientists Fund of the National Natural Science Foundation of China(No.31701291,to WL).
文摘Regenerating functional new neurons in the adult mammalian central nervous system has been proven to be very challenging due to the inability of neurons to divide and repopulate themselves after neuronal loss.Glial cells,on the other hand,can divide and repopulate themselves under injury or diseased conditions.We have previously reported that ectopic expression of NeuroD1 in dividing glial cells can directly convert them into neurons.Here,using astrocytic lineage-tracing reporter mice(Aldh1l1-CreERT2 mice crossing with Ai14 mice),we demonstrate that lineage-traced astrocytes can be successfully converted into NeuNpositive neurons after expressing NeuroD1 through adeno-associated viruses.Retroviral expression of NeuroD1 further confirms that dividing glial cells can be converted into neurons.Importantly,we demonstrate that for in vivo cell conversion study,using a safe level of adeno-associated virus dosage(10^10–10^12 gc/mL,1μL)in the rodent brain is critical to avoid artifacts caused by toxic dosage,such as that used in a recent bioRxiv study(2×10^13 gc/mL,1μL,mouse cortex).For therapeutic purpose under injury or diseased conditions,or for non-human primate studies,adeno-associated virus dosage needs to be optimized through a series of dose-finding experiments.Moreover,for future in vivo gliato-neuron conversion studies,we recommend that the adeno-associated virus results are further verified with retroviruses that mainly express transgenes in dividing glial cells in order to draw solid conclusions.The study was approved by the Laboratory Animal Ethics Committee of Jinan University,China(approval No.IACUC-20180330-06)on March 30,2018.
基金the National Key Research and Development Program of China(2021ZD0202700 and 2021ZD0202703)the National Natural Science Foundation of China(32070974).
文摘Neurons are highly interwoven to form intricate neural circuits that underlie the diverse functions of the brain.Dissecting the anatomical organization of neural circuits is key to deciphering how the brain processes information,produces thoughts,and instructs behaviors.Over the past decades,recombinant viral vectors have become the most commonly used tracing tools to define circuit architecture.In this review,we introduce the current categories of viral tools and their proper application in circuit tracing.We further discuss some advances in viral tracing strategy and prospective innovations of viral tools for future study.
