分子生物学技术比传统的培养方法可得到土壤微生物种群多样性更全面的信息。变性梯度凝胶电泳(Denaturing gradient gel electrophoresis,DGGE)和温度梯度凝胶电泳(Temperature gradient gel electrophoresis,TGGE)可分离PCR扩增的DNA片...分子生物学技术比传统的培养方法可得到土壤微生物种群多样性更全面的信息。变性梯度凝胶电泳(Denaturing gradient gel electrophoresis,DGGE)和温度梯度凝胶电泳(Temperature gradient gel electrophoresis,TGGE)可分离PCR扩增的DNA片段,已成为研究土壤微生物群落多样性的重要手段。本文综述了DGGE/TGGE技术在土壤微生物多样性研究中的应用进展,分析了该方法的主要影响因素及其优点和存在的问题。展开更多
变性梯度凝胶电泳(deaturing grad ien t ge l e lectrophores is,DGGE)和温度梯度凝胶电泳(tem perature grad ien t ge le lectrophores is,TGGE)可以直接分离PCR扩增片段,作为一种分子指纹技术而逐渐被人们应用于微生态研究中。通过D...变性梯度凝胶电泳(deaturing grad ien t ge l e lectrophores is,DGGE)和温度梯度凝胶电泳(tem perature grad ien t ge le lectrophores is,TGGE)可以直接分离PCR扩增片段,作为一种分子指纹技术而逐渐被人们应用于微生态研究中。通过DGGE/TGGE对微生物组成的遗传特性进行表征,不但省去了菌种分离耗时耗力的工作量,更可鉴定出根据传统方法无法分离出来的菌种。作者重点描述了DGGE/TGGE的基本原理以及在胃肠道微生态研究中的应用。展开更多
采用TGGE(Temperature gradient gel electrophoresis)方法对水源热泵水体的细菌群落结构进行了分析,首先提取水体微生物的总DNA,扩增16S V3区片段,然后进行TGGE分析。TGGE图谱的初步分析结果表明,安康湖水样中的细菌丰富度较高。在空...采用TGGE(Temperature gradient gel electrophoresis)方法对水源热泵水体的细菌群落结构进行了分析,首先提取水体微生物的总DNA,扩增16S V3区片段,然后进行TGGE分析。TGGE图谱的初步分析结果表明,安康湖水样中的细菌丰富度较高。在空调制冷期,细菌群落结构波动较大;而在空调制热期,细菌群落结构波动较小,说明夏季空调制冷期对水体的影响较大。相似性及聚类分析表明,空调运行的持续时间的长短及运行负荷的大小决定热泵尾水排放所影响的水域范围,尤其是对取水口处的影响。序列分析结果显示,水体中细菌属于3大类群:变形杆菌(Proteobacteria)、厚壁菌(Firmicutes)和拟杆菌(Bacteroides)。展开更多
The fungal communities in mushroom compost phase Ⅱ was assessed using a combination of PCR amplification and sequencing of 18S rDNA from fungal isolates and “nested” PCR TGGE analysis on the basis of DNA directly e...The fungal communities in mushroom compost phase Ⅱ was assessed using a combination of PCR amplification and sequencing of 18S rDNA from fungal isolates and “nested” PCR TGGE analysis on the basis of DNA directly extracted from compost samples. The diversity of cultivated fungi isolated from compost samples was low. A total of 11 isolates were related to only 2 different species. One species, Chaetomium elatum, was identified within 10 isolates, and the other, with high similarity belonged to Penicillium expansum. The fungal flora associated with mushroom compost was then monitored with “nested” PCR TGGE. The patterns obtained revealed the more complex existence of fungal communities from the original compost samples than from thoses enriched with food waste and cow slurry.展开更多
文摘分子生物学技术比传统的培养方法可得到土壤微生物种群多样性更全面的信息。变性梯度凝胶电泳(Denaturing gradient gel electrophoresis,DGGE)和温度梯度凝胶电泳(Temperature gradient gel electrophoresis,TGGE)可分离PCR扩增的DNA片段,已成为研究土壤微生物群落多样性的重要手段。本文综述了DGGE/TGGE技术在土壤微生物多样性研究中的应用进展,分析了该方法的主要影响因素及其优点和存在的问题。
文摘变性梯度凝胶电泳(deaturing grad ien t ge l e lectrophores is,DGGE)和温度梯度凝胶电泳(tem perature grad ien t ge le lectrophores is,TGGE)可以直接分离PCR扩增片段,作为一种分子指纹技术而逐渐被人们应用于微生态研究中。通过DGGE/TGGE对微生物组成的遗传特性进行表征,不但省去了菌种分离耗时耗力的工作量,更可鉴定出根据传统方法无法分离出来的菌种。作者重点描述了DGGE/TGGE的基本原理以及在胃肠道微生态研究中的应用。
文摘采用TGGE(Temperature gradient gel electrophoresis)方法对水源热泵水体的细菌群落结构进行了分析,首先提取水体微生物的总DNA,扩增16S V3区片段,然后进行TGGE分析。TGGE图谱的初步分析结果表明,安康湖水样中的细菌丰富度较高。在空调制冷期,细菌群落结构波动较大;而在空调制热期,细菌群落结构波动较小,说明夏季空调制冷期对水体的影响较大。相似性及聚类分析表明,空调运行的持续时间的长短及运行负荷的大小决定热泵尾水排放所影响的水域范围,尤其是对取水口处的影响。序列分析结果显示,水体中细菌属于3大类群:变形杆菌(Proteobacteria)、厚壁菌(Firmicutes)和拟杆菌(Bacteroides)。
文摘The fungal communities in mushroom compost phase Ⅱ was assessed using a combination of PCR amplification and sequencing of 18S rDNA from fungal isolates and “nested” PCR TGGE analysis on the basis of DNA directly extracted from compost samples. The diversity of cultivated fungi isolated from compost samples was low. A total of 11 isolates were related to only 2 different species. One species, Chaetomium elatum, was identified within 10 isolates, and the other, with high similarity belonged to Penicillium expansum. The fungal flora associated with mushroom compost was then monitored with “nested” PCR TGGE. The patterns obtained revealed the more complex existence of fungal communities from the original compost samples than from thoses enriched with food waste and cow slurry.
