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DPCIPI: A pre-trained deep learning model for predicting cross-immunity between drifted strains of Influenza A/H3N2
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作者 Yiming Du Zhuotian Li +8 位作者 Qian He Thomas Wetere Tulu Kei Hang Katie Chan Lin Wang Sen Pei Zhanwei Du Zhen Wang Xiao-Ke Xu Xiao Fan Liu 《Journal of Automation and Intelligence》 2025年第2期115-124,共10页
Predicting cross-immunity between viral strains is vital for public health surveillance and vaccine development.Traditional neural network methods,such as BiLSTM,could be ineffective due to the lack of lab data for mo... Predicting cross-immunity between viral strains is vital for public health surveillance and vaccine development.Traditional neural network methods,such as BiLSTM,could be ineffective due to the lack of lab data for model training and the overshadowing of crucial features within sequence concatenation.The current work proposes a less data-consuming model incorporating a pre-trained gene sequence model and a mutual information inference operator.Our methodology utilizes gene alignment and deduplication algorithms to preprocess gene sequences,enhancing the model’s capacity to discern and focus on distinctions among input gene pairs.The model,i.e.,DNA Pretrained Cross-Immunity Protection Inference model(DPCIPI),outperforms state-of-theart(SOTA)models in predicting hemagglutination inhibition titer from influenza viral gene sequences only.Improvement in binary cross-immunity prediction is 1.58%in F1,2.34%in precision,1.57%in recall,and 1.57%in Accuracy.For multilevel cross-immunity improvements,the improvement is 2.12%in F1,3.50%in precision,2.19%in recall,and 2.19%in Accuracy.Our study showcases the potential of pre-trained gene models to improve predictions of antigenic variation and cross-immunity.With expanding gene data and advancements in pre-trained models,this approach promises significant impacts on vaccine development and public health. 展开更多
关键词 Cross-immunity prediction Pre-trained model Deep learning Influenza strains Hemagglutination inhibition
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Entropy Engineering Activates Cu-Fe Inertia Center From Prussian Blue Analogs With Micro-Strains for Oxygen Electrocatalysis in Zn-Air Batteries
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作者 Han Man Guanyu Chen +5 位作者 Fengmei Wang Jiafeng Ruan Yihao Liu Yang Liu Fang Fang Renchao Che 《Carbon Energy》 2025年第5期126-135,共10页
By the random distribution of metals in a single phase,entropy engineering is applied to construct dense neighboring active centers with diverse electronic and geometric structures,realizing the continuous optimizatio... By the random distribution of metals in a single phase,entropy engineering is applied to construct dense neighboring active centers with diverse electronic and geometric structures,realizing the continuous optimization of multiple primary reactions for oxygen reduction reaction(ORR)and oxygen evolution reaction(OER).Many catalysts developed through entropy engineering have been built in nearly equimolar ratios to pursue high entropy,hindering the identification of the active sites and potentially diluting the concentration of real active sites while weakening their electronic interactions with reaction intermediates.Herein,this work proposes an entropy-engineering strategy in metal nanoparticle-embedded nitrogen carbon electrocatalysts,implemented by entropy-engineered Prussian blue analogs(PBA)as precursors to enhance the catalytic activity of primary Cu-Fe active sites.Through the introduction of the micro-strains driven by entropy engineering,density functional theory(DFT)calculations and geometric phase analysis(GPA)using Lorentz electron microscopy further elucidate the optimization of the adsorption/desorption of intermediates.Furthermore,the multi-dimensional morphology and the size diminishment of the nanocrystals serve to expand the electrochemical area,maximizing the catalytic activity for both ORR and OER.Notably,the Zn-air battery assembled with CuFeCoNiZn-NC operated for over 1300 h with negligible decay.This work presents a paradigm for the design of low-cost electrocatalysts with entropy engineering for multi-step reactions. 展开更多
关键词 Prussian blue analog strains transition metal-based catalyst zinc-air battery
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Polyethylene glycol fusion repair of severed sciatic nerves accelerates recovery of nociceptive sensory perceptions in male and female rats of different strains
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作者 Liwen Zhou Karthik Venkudusamy +9 位作者 Emily A.Hibbard Yessenia Montoya Alexa Olivarez Cathy Z.Yang Adelaide Leung Varun Gokhale Guhan Periyasamy Zeal Pathak Dale R.Sengelaub George D.Bittner 《Neural Regeneration Research》 SCIE CAS 2025年第9期2667-2681,共15页
Successful polyethylene glycol fusion(PEG-fusion)of severed axons following peripheral nerve injuries for PEG-fused axons has been reported to:(1)rapidly restore electrophysiological continuity;(2)prevent distal Walle... Successful polyethylene glycol fusion(PEG-fusion)of severed axons following peripheral nerve injuries for PEG-fused axons has been reported to:(1)rapidly restore electrophysiological continuity;(2)prevent distal Wallerian Degeneration and maintain their myelin sheaths;(3)promote primarily motor,voluntary behavioral recoveries as assessed by the Sciatic Functional Index;and,(4)rapidly produce correct and incorrect connections in many possible combinations that produce rapid and extensive recovery of functional peripheral nervous system/central nervous system connections and reflex(e.g.,toe twitch)or voluntary behaviors.The preceding companion paper describes sensory terminal field reo rganization following PEG-fusion repair of sciatic nerve transections or ablations;howeve r,sensory behavioral recovery has not been explicitly explored following PEG-fusion repair.In the current study,we confirmed the success of PEG-fusion surgeries according to criteria(1-3)above and more extensively investigated whether PEG-fusion enhanced mechanical nociceptive recovery following sciatic transection in male and female outbred Sprague-Dawley and inbred Lewis rats.Mechanical nociceptive responses were assessed by measuring withdrawal thresholds using von Frey filaments on the dorsal and midplantar regions of the hindpaws.Dorsal von Frey filament tests were a more reliable method than plantar von Frey filament tests to assess mechanical nociceptive sensitivity following sciatic nerve transections.Baseline withdrawal thresholds of the sciatic-mediated lateral dorsal region differed significantly across strain but not sex.Withdrawal thresholds did not change significantly from baseline in chronic Unoperated and Sham-operated rats.Following sciatic transection,all rats exhibited severe hyposensitivity to stimuli at the lateral dorsal region of the hindpaw ipsilateral to the injury.However,PEG-fused rats exhibited significantly earlier return to baseline withdrawal thresholds than Negative Control rats.Furthermore,PEG-fused rats with significantly improved Sciatic Functional Index scores at or after 4 weeks postoperatively exhibited yet-earlier von Frey filament recove ry compared with those without Sciatic Functional Index recovery,suggesting a correlation between successful PEG-fusion and both motor-dominant and sensory-dominant behavioral recoveries.This correlation was independent of the sex or strain of the rat.Furthermore,our data showed that the acceleration of von Frey filament sensory recovery to baseline was solely due to the PEG-fused sciatic nerve and not saphenous nerve collateral outgrowths.No chronic hypersensitivity developed in any rat up to 12 weeks.All these data suggest that PEG-fusion repair of transection peripheral nerve injuries co uld have important clinical benefits. 展开更多
关键词 autophagia AXOTOMY collateral sprouting neuropathic pain peripheral nerve repair polyethylene glycol fusion(PEG-fusion) saphenous nerve sensory neurons sex and strain Wallerian degeneration
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Isolation,Screening and Identification of Cellulose Decomposing Strains in Straw-amended Soil 被引量:3
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作者 郭艳 张进良 +2 位作者 王会平 齐辉 梁峰 《Agricultural Science & Technology》 CAS 2010年第4期134-137,147,共5页
[Objective]The aim was to isolate cellulose decomposing strains with high activity from straw-amended soil.[Method]Screening of CMC solid culture and shaking culture rescreening were carried out to obtain cellulose de... [Objective]The aim was to isolate cellulose decomposing strains with high activity from straw-amended soil.[Method]Screening of CMC solid culture and shaking culture rescreening were carried out to obtain cellulose decomposing strains with high activity from the corn straw amended soil,which were analyzed by 16rDNA sequence analysis.[Result]A bacterium and a fungus with higher endonucleases activity were obtained through preliminary screening and secondary screening,a fungus with higher filter paper enzyme activity,and a bacterium(NO.5 strain) with higher of both filter paper enzyme activity and CMC enzyme activity were obtained.The result of 16S rDNA sequence analysis showed that the similarity was 100% between NO.5 strain and Bacillus subtilis.[Conclusion]NO.5 strain was identified as Bacillus subtilis. 展开更多
关键词 Straw-amended soil Cellulose decomposing strains SCREENING CELLULASE
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Advances in Microbial Strains and Bedding Materials in a Deep-Litter System for Pig Breeding 被引量:2
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作者 秦竹 周忠凯 +4 位作者 顾洪如 杨杰 宦海琳 张霞 余刚 《Agricultural Science & Technology》 CAS 2013年第6期915-921,共7页
The selection and compatibility of the microbial strains and bedding materials in a deep-litter system is the primary issues for this ecological breeding technology. In this paper, we analyzed and summarized the categ... The selection and compatibility of the microbial strains and bedding materials in a deep-litter system is the primary issues for this ecological breeding technology. In this paper, we analyzed and summarized the categories of microbial strains and bedding materials suitable for a deep-litter system, the fermentation properties of different microbes, the parameter requirements of bedding materials, and the fermentation process led by functional microbial flora in a deep-litter system, with the objective to provide theoretical bases and practical guidance for the promotion of deep-litter breeding method nationwide. 展开更多
关键词 Deep-litter system Microbial strains Bedding materials Manure decomposition
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Tuning the Charge Density Wave and Low-Energy Magnetic States with Nanoscale Strains in GdTe_(3)
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作者 Zhong-Yi Cao Hui Chen +5 位作者 Guo-Jian Qian Yan-Hao Shi Qi Qi Xiang-He Han Hai-Tao Yang Hong-Jun Gao 《Chinese Physics Letters》 2025年第10期166-185,共20页
Recent advances in strain engineering have enabled unprecedented control over quantum states in strongly correlated magnetic systems.However,nanoscale strain modulation of charge density waves(CDWs)and magnetically ex... Recent advances in strain engineering have enabled unprecedented control over quantum states in strongly correlated magnetic systems.However,nanoscale strain modulation of charge density waves(CDWs)and magnetically excited states,which is crucial for atomically precise strain engineering and practical spintronic applications,remains unexplored.Here,we report the nanoscale strain effects on CDWs and low-energy electronic states in the van der Waals antiferromagnetic metal GdTe_(3),utilizing scanning tunneling microscopy/spectroscopy.Lowtemperature cleavage introduces local strains,resulting in the formation of nanoscale wrinkles on the GdTe_(3)surface.Atomic displacement analysis reveals two distinct types of wrinkles:Wrinkle-I,originating from unidirectional strain,and Wrinkle-II,dominated by shear strain.In Wrinkle-I,the tensile strain enhances the CDW gap,while the compressive strain induces a single low-energy magnetic state.Wrinkle-II switches the orientation of CDW,leading to the formation of an associated CDW domain wall.In addition,three low-energy magnetic states that exhibit magnetic field-dependent shifts and intensity variations emerge within the CDW gap around Wrinkle-II,indicative of a strain-tuned coupling between CDW order and localized 4f-electron magnetism.These findings establish nanoscale strain as a powerful tuning knob for manipulating intertwined electronic and magnetic excitations in correlated magnetic systems. 展开更多
关键词 nanoscale strain effects strain modulation charge density waves cdws control quantum states strain engineering practical spintronic applicationsremains scanning tunneling van der waals antiferromagnetic metal
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Isolation and Phylogenetic Analysis of Plant Pathogen-Inhibiting Strains from Southern Ocean 被引量:1
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作者 方海霞 赵惠娅 +2 位作者 陈发荣 王燕 林学政 《Agricultural Science & Technology》 CAS 2012年第5期1003-1006,1013,共5页
[Objective] The aim was to isolate the strains resistant to plant pathogenic fungi from Southern Ocean and study their phylogenetic relationship and antimicrobial spectrum. [Method] Agar diffusion method was adopted t... [Objective] The aim was to isolate the strains resistant to plant pathogenic fungi from Southern Ocean and study their phylogenetic relationship and antimicrobial spectrum. [Method] Agar diffusion method was adopted to screen antimicrobial strains and determine the antimicrobial spectrum. Phylogenetic relationship of the strains was analyzed by neighbor-joining method of the Mega 4.0 software. [Result] Twenty antimicrobial strains were screened from seawater of Southern Ocean collected during the 27^th Chinese Antarctic Scientific Expedition. Molecular identification and phyloge- netic analysis indicated that two antimicrobial strains were members of Pseu- domonas, two strains were members of Psychrobacter, and the other 16 trains were members of Pseudoalteromonas. The antimicrobial spectrum of four strains which had higher antimicrobial activity indicated that the strains 312, 83-1 and 195 greatly inhibited the growth of Fusarium oxysporum, Rhizoctonia solani K(Jhn, Phytophthora capsici Leonian, Verticillium dahliae, Alternaria solani, Thanatephoru scucumeris and Phomopsis asparagi (Sacc); strain 312-1 had obvious antimicrobial effect on the six of the plant pathogens except R. solani. [Conclusion] Four strains which had higher antimicrobial effect were obtained and should be further studied for development and application. 展开更多
关键词 Antarctic bacteria Antimicrobial strains Antimicrobial spectrum Phylogenetic analysis
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Relationship between trophic component of different poplar strains and occurrence of Saperda poplnea
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作者 高长启 孙守慧 +8 位作者 任晓光 宋丽文 张晓军 戴万琢 肖辉 庄翠云 易德国 朱振宇 任海波 《Journal of Forestry Research》 SCIE CAS CSCD 2001年第4期263-265,278,共4页
An experimental area of poplar was established in Songyuan of Jilin Province in 1999 for testing the resistance of different poplar stains to Saperda poplnea. Incidence of S. poplnea on ten poplar strains were investi... An experimental area of poplar was established in Songyuan of Jilin Province in 1999 for testing the resistance of different poplar stains to Saperda poplnea. Incidence of S. poplnea on ten poplar strains were investigated, and the main trophic component of branches of these poplar trees were measured and analyzed in April 2001. The results showed that there existed significant difference in population size of S. poplnea on different poplar strains, and the branches of these poplar strains have significant difference in nutrient component and content of amino acids. The population size of this pest had a significantly positive correlation with dissolvable total sugar and water content but had no significant correlation with content of total nitrogen and protein nitrogen. 展开更多
关键词 Saperda poplnea Poplar strains Pest resistance
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Expression of cyclooxygenase-2 mRNA in drug-sensitive cell and drug-resistant strains of ovarian cancer cell lines
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作者 Xiaoyan Li Zehua Wang 《Journal of Nanjing Medical University》 2006年第1期52-54,共3页
Objective: To investigate the expression of cyclooxygenase-2 (COX-2) mRNA in drug-sensitive cell and drugresistant clones of ovarian cancer cell lines. Methods: RT-PCR and immunocytochemistry were used to investig... Objective: To investigate the expression of cyclooxygenase-2 (COX-2) mRNA in drug-sensitive cell and drugresistant clones of ovarian cancer cell lines. Methods: RT-PCR and immunocytochemistry were used to investigate the expression of cyclooxygenase-2 in 3 clones drug-sensitive and 5 clones drug-resistant ovarian cancer cell. Results: Strong COX-2 mRNA expressions were detected in 3 clones of drug-sensitive cell and weak expressions were detected in 5 clones of drug-resistant cell. The protein expression of COX-2 in drug-sensitive cell was strongly positive reaction in immunocytochemistry stain and there was a weak positive reaction in 5 clones of drug-resistant cell. Conclusion: The expression of COX-2 mRNA in drug-sensitive cell strains is much higher than that in drugresistant strains of ovarian cancer cell lines, providing a basis of the chemoprevention for ovarian cancer. 展开更多
关键词 ovarian cancer cell lines drug-sensitive cell strains drug-resistant strains cyclooxygelmse-2
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Screening of Saccharomyces Strains Highly Producing Glutathione and Breeding of Its Ethionine-resistant Mutants 被引量:2
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作者 冮洁 单立峰 +1 位作者 吴耘红 张鹭 《Agricultural Science & Technology》 CAS 2008年第6期35-38,112,共5页
[Objective] The aim of this study was to screen Saccharomyces for glutathione over-production. [Method] Ethionine-resistant mutants were obtained through UV mutagenesis and rational screening. [Result] A high GSH-prod... [Objective] The aim of this study was to screen Saccharomyces for glutathione over-production. [Method] Ethionine-resistant mutants were obtained through UV mutagenesis and rational screening. [Result] A high GSH-producing strain HSJB1 was isolated from soil, and the biomass for this strain by flask shaking fermentation was 3.87 g/L while the GSH yield was 91.87 mg/L. According to the morphological, physiological and biochemical characteristics of cells, this strain was primarily identified as Saccharomyces cerevisiae. An ethionine-resistant mutant YBS77 was obtained through UV mutagenesis of the original strain HSJB1, and the biomass for this strain by flask shaking fermentation was 7.60 g dry cell weight/L while the GSH yield was 211.96 mg/L. [Conclusion] The biomass of the mutant obtained by breeding is increased by 96.38% than that of the original strain, and the GSH yield of the mutant obtained by breeding is increased by 130.72% than that from the original strain, which indicates that the breeding method is feasible. 展开更多
关键词 GLUTATHIONE (GSH) SACCHAROMYCES CEREVISIAE Strain BREEDING MUTANT
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Differential degradation of crude oil (Bonny Light) by four Pseudomonas strains 被引量:10
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作者 Oluwafemi S.Obayori Sunday A.Adebusoye +4 位作者 Adams O.Adewale Ganiyu O.Oyetibo Odunola O.Oluyemi Rashid A.Amokun Matthew O.Ilori 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2009年第2期243-248,共6页
Four hydrocarbon degraders isolated from enriched oil- and asphalt-contaminated soils in Lagos, Nigeria, were tested for their petroleum degradation potentials. All the isolates were identified as species of Pseudomon... Four hydrocarbon degraders isolated from enriched oil- and asphalt-contaminated soils in Lagos, Nigeria, were tested for their petroleum degradation potentials. All the isolates were identified as species of Pseudomonas. Pseudomonas putida P 11 demonstrated a strong ability to degrade kerosene, gasoline, diesel, engine oil and crude oil while P. aeruginosa BB3 exhibited fair degradative ability on crude oil, gasoline, engine oil, anthracene and pyrene but weak on kerosene, diesel and dibenzothiophene. Pseudomonas putida WL2 and P. aeruginosa MVL1 grew on crude oil and all its cuts tested with the latter possessing similar polycyclic aromatic potentials as P11. All the strains grew logarithmically with 1-2 orders of magnitude and with generation time ranging significantly between 3.07 and 8.55 d at 0.05 level of confidence. Strains WL2 and MVL1 utilized the oil substrate best with more than 70% in 6 d experimental period, whereas the same feat was achieved by P11 in 12 d period. BB3 on the other hand degraded only 46% within 6 d. Interestingly, data obtained from gas chromatographic analysis of oil recovered from the culture fluids of MVL1 confirmed near-disappearance of major peaks (including aliphatics and aromatics) in the hydrocarbon mixture. 展开更多
关键词 BIODEGRADATION crude oil hydrocarbons POLLUTION Pseudomonas strains
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Protective efficacy of an H5/H7 trivalent inactivated vaccine(H5-Re13,H5-Re14, and H7-Re4 strains) in chickens, ducks, and geese against newly detected H5N1, H5N6, H5N8, and H7N9 viruses 被引量:23
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作者 ZENG Xian-ying HE Xin-wen +9 位作者 MENG Fei MA Qi WANG Yan BAO Hong-mei LIU Yan-jing DENG Guo-hua SHI Jian-zhong LI Yan-bing TIAN Guo-bin CHEN Hua-lan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2022年第7期2086-2094,共9页
Some H5 viruses isolated in poultry or wild birds between 2020 and 2021 were found to be antigenically different from the vaccine strains(H5-Re11 and H5-Re12) used in China. In this study, we generated three new recom... Some H5 viruses isolated in poultry or wild birds between 2020 and 2021 were found to be antigenically different from the vaccine strains(H5-Re11 and H5-Re12) used in China. In this study, we generated three new recombinant vaccine seed viruses by using reverse genetics and used them for vaccine production. The vaccine strain H5-Re13 contains the hemagglutinin(HA) and neuraminidase(NA) genes of an H5 N6 virus that bears the clade 2.3.4.4 h HA gene, H5-Re14 contains the HA and NA genes of an H5 N8 virus that bears the clade 2.3.4.4 b HA gene, and H7-Re4 contains the HA and NA genes of H7 N9 virus detected in 2021. We evaluated the protective efficacy of the novel H5/H7 trivalent inactivated vaccine in chickens, ducks, and geese. The inactivated vaccine was immunogenic and induced substantial antibody responses in the birds tested. Three weeks after vaccination, chickens were challenged with five different viruses detected in 2020 and 2021: three viruses(an H5 N1 virus, an H5 N6 virus, and an H5 N8 virus) bearing the clade 2.3.4.4 b HA gene, an H5 N6 virus bearing the clade 2.3.4.4 h HA gene, and an H7 N9 virus. All of the control birds shed high titers of virus and died within 4 days post-challenge, whereas the vaccinated chickens were completely protected from these viruses. Similar protective efficacy against H5 viruses bearing the clade 2.3.4.4 h or 2.3.4.4 b HA gene was observed in ducks and geese. Our study indicates that the newly updated H5/H7 vaccine can provide solid protection against the H5 and H7 N9 viruses that are currently circulating in nature. 展开更多
关键词 avian influenza H5/H7 trivalent vaccine H5-Re13 H5-Re14 H7-Re4 strains protective efficacy CHICKENS ducks and geese
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Screening of flocculant-producing strains by NTG mutagenesis 被引量:8
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作者 HUANGXiao-wu CHENGWen HUYong-you 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2005年第3期494-498,共5页
Screening of new microorganism being able to produce efficiently flocculants was carried out. A new model for screening efficient flocculant-producing strains was designed and tested. The results showed that this mode... Screening of new microorganism being able to produce efficiently flocculants was carried out. A new model for screening efficient flocculant-producing strains was designed and tested. The results showed that this model for screening efficient flocculant-producing strains is very reliable and can greatly shorten the screening period. 13 flocculant-producing strains were isolated from activated sludge by conventional method. A strain, designated as HHE6, produced the bioflocculant with the turbidity removal 98% for kaolin suspension. Six of 13 strains selected as the original strains were treated with NTG as mutagen, and five mutant strains(HHE-P7, HHE-A8, HHE-P21, HHE-P24, HHE-A26) with high flocculation efficiency was obtained by selection, which exhibited the flocculation rate for kaolin suspension above 90%. Strains HHE6, HHE-P7, and HHE-P24 were classified as Penicillium purpurogenum, HHE-P21 as Penicillium cyclopium, HHE-A26 as Aspergillus versicolor and HHE-A8 as Aspergillus fumigatus, and it is hitherto unreported for biofloccutant-producing strains of Penicillium. The growth of the six strains(HHE6, HHE-P7, HHE-A8, HHE-P21, HHE-P24, HHE-A26) had similar curves, i.e. firstly increasing rapidly, keeping relatively constant then and finally decreasing gradually with cultivation time. The production of bioflocculants by strains showed the similar pattern to strain growth. 展开更多
关键词 BIOFLOCCULANT mutation breeding bioflocculant-producing strains PENICILLIUM ASPERGILLUS
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Analysis of genetic relationship in mutant silkworm strains of Bom-byx mori using inter simple sequence repeat (ISSR) markers 被引量:7
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作者 Dhanikachalam Velu Kangayam M. Ponnuvel +2 位作者 Murugiah Muthulakshmi Randhir K. Sinha Syed M.H. Qadri 《Journal of Genetics and Genomics》 SCIE CAS CSCD 北大核心 2008年第5期291-297,共7页
Amplified inter simple sequence repeats (ISSR) markers were used to determine genetic relationships among mutant silkworm strains of Bombyx mori. Fifteen ISSR primers containing simple sequence repeat (SSR) motifs... Amplified inter simple sequence repeats (ISSR) markers were used to determine genetic relationships among mutant silkworm strains of Bombyx mori. Fifteen ISSR primers containing simple sequence repeat (SSR) motifs were used in this study. A total of 113 markers were produced among 20 mutant strains, of which 73.45% were found to be polymorphic. In selected mutant genetic stocks, the average number of observed allele was (1.7080 ± 0.4567), effective alleles (1.5194 ± 0.3950) and genetic diversity (Ht) (0.2901 ± 0.0415). The dendrogram produced using the unweighted pair group method with arithmetic means (UPGMA) and cluster analysis made using Nei's genetic distance resulted in the formation of one major group containing 6 groups separated 20 mutant silkworm strains. Therefore, ISSR amplification is a valuable method for determining the genetic variability among mutant silkworm strains. This efficient molecular marker would be useful for characterizing a considerable number of silkworm strains maintained at the germplasm center. 展开更多
关键词 genetic diversity Bombyx mori mutant strains ISSR
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Protective efficacy of an H5/H7 trivalent inactivated vaccine produced from Re-11, Re-12, and H7-Re2 strains against challenge with different H5 and H7 viruses in chickens 被引量:12
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作者 ZENG Xian-ying CHEN Xiao-han +16 位作者 MA Shu-jie WU Jiao-jiao BAO Hong-mei PAN Shu-xin LIU Yan-jing DENG Guo-hua SHI Jian-zhong CHEN Pu-cheng JIANG Yong-ping LI Yan-bing HU Jing-lei LU Tong MAO Sheng-gang GUO Xing-fu LIU Jing-li TIAN Guo-bin CHEN Hua-lan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2020年第9期2294-2300,共7页
We developed an H5/H7 trivalent inactivated vaccine by using Re-11, Re-12, and H7-Re2 vaccine seed viruses, which were generated by reverse genetics and derived their HA genes from A/duck/Guizhou/S4184/2017(H5N6) (DK/... We developed an H5/H7 trivalent inactivated vaccine by using Re-11, Re-12, and H7-Re2 vaccine seed viruses, which were generated by reverse genetics and derived their HA genes from A/duck/Guizhou/S4184/2017(H5N6) (DK/GZ/S4184/17) (a clade 2.3.4.4d virus), A/chicken/Liaoning/SD007/2017(H5N1) (CK/LN/SD007/17) (a clade 2.3.2.1d virus), and A/chicken/ Guangxi/SD098/2017(H7N9) (CK/GX/SD098/17), respectively. The protective efficacy of this novel vaccine and that of the recently used H5/H7 bivalent inactivated vaccine against different H5 and H7N9 viruses was evaluated in chickens. We found that the H5/H7 bivalent vaccine provided solid protection against the H7N9 virus CK/GX/SD098/17, but only 50–60% protection against different H5 viruses. In contrast, the novel H5/H7 trivalent vaccine provided complete protection against the H5 and H7 viruses tested. Our study underscores the importance of timely updating of vaccines for avian influenza control. 展开更多
关键词 avian influenza H5/H7 trivalent vaccine Re-11 Re-12 and H7-Re2 strains protective efficacy
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Molecular Characterization and Drug-resistance of Mycobacterium tuberculosis Strains in Xuzhou, China 被引量:8
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作者 PANG Hui TONG Jing +6 位作者 LIU Hai Can DU Yang Guang ZHAO Xiu Qin JIANG Yi WU Xiao Cui YANG Jin Chuan WAN Kang Lin 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 2014年第12期960-964,共5页
To understand the genetic diversity and drug resistance status of Mycobocterium tuberculosis (M. tuberculosis) circulating in Xuzhou of China, the spacer-oligonucleotide typing (Spoligotyping) and multi-loci VNTRs... To understand the genetic diversity and drug resistance status of Mycobocterium tuberculosis (M. tuberculosis) circulating in Xuzhou of China, the spacer-oligonucleotide typing (Spoligotyping) and multi-loci VNTRs (variable number tandem repeats) analysis (MLVA) were utilized for the genotyping of the isolates. Drug susceptibility test (DST) was performed by the proportion method on the Lowenstein-Jensen (L-J) medium using isoniazid, rifampicin, ethambutol, and streptomycin. By Spoligotyping, 287 M. tuberculosis isolates were differentiated into 14 clusters. Then with 15-1oci MLVA, these strains could be divided into 32 clusters, 228 genotypes. Of 15 VNTRs, 6 loci had the highly discriminatory powers, 6 loci presented moderate discrimination and 3 loci demonstrated less polymorphism. The DST results showed that 46 strains were resistant to at least one first-line anti-tuberculosis agent. There was a difference in the isoniazid resistance between Beijing and non-Beijing genotype strains. We concluded that the combination of Spoligotyping and 15 VNTR loci as the genotyping in our study was applicable for this region, the drug resistant isolates were identified, and the Beijing family was the most prevalent genotype in the rural counties of Xuzhou. 展开更多
关键词 VNTR Molecular Characterization and Drug-resistance of Mycobacterium tuberculosis strains in Xuzhou China MLVA
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Protein Expression of BLM Gene and Its Apoptosis Sensitivity in Hematopoietic Tumor Cell Strains 被引量:6
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作者 王晓蓓 胡丽华 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 2008年第1期46-48,共3页
Patients with Bloom syndrome (BS) show an immunodeficiency, an enhanced sister chromatid exchanges (SCEs), a strong genetic instability and an increased predisposition to all. In order to investigate the different... Patients with Bloom syndrome (BS) show an immunodeficiency, an enhanced sister chromatid exchanges (SCEs), a strong genetic instability and an increased predisposition to all. In order to investigate the differential expression of BLM protein in hematopoietic tumor cell strains and study the effects of BLM gene on ultraviolet (UV)- or hydroxyurea (HU)-induced apoptosis, Western blot was used to detect the expression of BLM protein in normal human bone marrow mononuclear cells and 4 kinds of hematopoietic tumor cell strains. The 4 kinds of hematopoietic tumor cells were exposed to UV light with a germicidal UV lamp or treated with 2 mmol/L hydroxyurea and the apoptotic rate was detected by using AnnexinV-FITC. The results showed that these tumor cells expressed BLM protein higher than the normal human bone marrow mononuclear cells (P〈0.01). In the 4 hematopoietic tumor cells, BLM protein was all specially cleaved in response to UV- or HU-induced apoptosis. The increase of BLM protein expression may play an important role in the development of these tumors, and BLM proteolysis is likely to be a general feature of the apoptotic response. 展开更多
关键词 BLM gene PROTEIN APOPTOSIS hematopoietic tumor cell strains
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Misfit strains inducing voltage decay in LiMn_(y)Fe_(1-y)PO_(4)/C 被引量:7
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作者 Chun Luo Yao Jiang +3 位作者 Xinxin Zhang Chuying Ouyang Xiaobin Niu Liping Wang 《Journal of Energy Chemistry》 SCIE EI CAS CSCD 2022年第5期206-212,共7页
LiMn_(y)Fe_(1-y)PO_(4) is considered a promising cathode material for next-generation lithium-ion batteries(LIBs) due to its high energy density and low cost. Its energy density degradation is often ascribed to the ca... LiMn_(y)Fe_(1-y)PO_(4) is considered a promising cathode material for next-generation lithium-ion batteries(LIBs) due to its high energy density and low cost. Its energy density degradation is often ascribed to the capacity loss during cycling. However, in this study, we find that the energy density degradation mainly roots in voltage decay. We have synthesized a series of LiMn_(y)Fe_(1-y)PO_(4) /C(0.5 ≤ y ≤ 0.8) and find this voltage decay is correlated with the Mn content. A high amount Mn leads to a heavier voltage decay.In-situ X-ray diffraction(XRD) and high-resolution transmission electron microscopy(HRTEM) reveal the nature of this effect, which show a mismatch along the b-axis of-2.68%(charge) and +3.4%(discharge), a volume misfit of-4.41%(charge) and +4.54%(discharge) between Li_(x)Mn_(y)Fe_(1-y)PO_(4) and Mn_(y)Fe_(1-y)PO_(4) during phase transitions. The resultant misfit strains during Li+insertion compared to extraction result in structural degradations, such as amorphization and impurity(Mn F3) accumulation after cycling. The voltage decay can be alleviated by kinetic relaxations and recovered by a wild reannealing. This work demonstrates effective strategies to improve the energy density and cycling performance of LiMn_(y)Fe_(1-y)PO_(4) /C,providing good references for other LIB cathodes, such as the Li-rich cathodes. 展开更多
关键词 Olivine cathodes LiMn_(y)Fe_(1-y)PO_(4)/C Voltage decay Misfit strains Structural degradation
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Characteristics of gut microbiota in representative mice strains:Implications for biological research 被引量:4
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作者 Jianguo Guo Chenchen Song +5 位作者 Yunbo Liu Xuying Wu Wei Dong Hua Zhu Zhiguang Xiang Chuan Qin 《Animal Models and Experimental Medicine》 CAS CSCD 2022年第4期337-349,I0002,共14页
Background:Experimental animals are used to study physiological phenomena,pathological mechanisms,and disease prevention.The gut microbiome is known as a potential confounding factor for inconsistent data from preclin... Background:Experimental animals are used to study physiological phenomena,pathological mechanisms,and disease prevention.The gut microbiome is known as a potential confounding factor for inconsistent data from preclinical studies.Although many gut microbiome studies have been conducted in recent decades,few have focused on gut microbiota fluctuation among representative mouse strains.Methods:A range of frequently used mouse strains were selected from 34 isolation packages representing disease-related animal(DRA),immunity defect animal(IDA),or gene-editing animal(GEA)from the BALB/c and C57BL/6J backgrounds together with normal mice,and their microbial genomic DNA were isolated from mouse feces to sequence for the exploration of gut microbiota.Results:Mouse background strain,classification,introduced source,introduced year,and reproduction type significantly affected the gut microbiota structure(p<0.001 for all parameters),with background strain contributing the greatest influence(R^(2)=0.237).In normal groups,distinct gut microbiota types existed in different mouse strains.Sixty-four core operational taxonomic units were obtained from normal mice,and 12 belonged to Lactobacillus.Interestingly,the gut microbiota in C57BL/6J was more stable than that in BALB/c mice.Furthermore,the gut microbiota in the IDA,GEA,and DRA groups significantly differed from that in normal groups(p<0.001 for all).Compared with the normal group,there was a significantly higher Chao 1 and Shannon index(p<0.001 for all)in the IDA,GEA,and DRA groups.Markedly changed classes occurred with Firmicutes and Bacteroidetes.The abundances of Helicobacter,Blautia,Enterobacter,Bacillus,Clostridioides,Paenibacillus,and Clostridiales all significantly decreased in the IDA,GEA,and DRA groups,whereas those of Saccharimonas,Rikenella,and Odoribacter all significantly increased. 展开更多
关键词 BACTEROIDETES BALB/c mice C57BL/6J disease-related animal FIRMICUTES gene-editing animal gut microbiota i mmunity defect animal strains
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Proteomic Study on Two Bradyrhizobium japonicum Strains with Different Competitivenesses for Nodulation 被引量:3
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作者 LI Jun XIAO Wen-li +6 位作者 MA Ming-chao GUAN Da-wei JIANG Xin CAO Feng-ming SHEN De-long CHEN Hui-jun LI Li 《Agricultural Sciences in China》 CAS CSCD 2011年第7期1072-1079,共8页
Competitiveness for nodulation of Bradyrhizobium japonicum strains plays a key role in symbiotic nitrogen fixation. In order to reveal the difference in competitiveness, B. japonicum 4534 with high competitiveness and... Competitiveness for nodulation of Bradyrhizobium japonicum strains plays a key role in symbiotic nitrogen fixation. In order to reveal the difference in competitiveness, B. japonicum 4534 with high competitiveness and B. japonicum 4222 with low competitiveness for nodulation were analyzed by proteomic technique. The results showed that differential proteins were fewer when two strains were treated with just daidzein. Only 24 and 10 differential proteins were detected with an up-regulated rate of 58 and 40% in B. japonicum 4534 and B. japonicum 4222, respectively. However, more differential proteins were detected upon treatment with daidzein and mutual extracellular materials simultaneously. There were 78 differential proteins detected in B. japonicum 4534 with 43 being up-regulated and 35 being down-regulated. These differential proteins, such as metabolism-related proteins, transporters, transcription-related proteins, translation-related proteins, and flagellin, were found to be associated with nodulation process. 25 up-regulated and 22 down-regulated proteins were detected in B. japonicum 4222. Some of these proteins were not related to nodulation. More differential proteins associated with nodulation in B. japonicum 4534 may be the reason for its high competitiveness. The results can provide a guide to the selection and inoculation of effective strains and are significant to biological nitrogen fixation. 展开更多
关键词 Bradyrhizobium japonicum strains DAIDZEIN extracellular materials competitiveness for nodulation proteomic technique
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