Diversity of soil microorganisms in different habitats of arid and semi-arid areas plays an important role in the soil texture and nutrient,promoting the growth of vegetation in those areas.To clarify the response of ...Diversity of soil microorganisms in different habitats of arid and semi-arid areas plays an important role in the soil texture and nutrient,promoting the growth of vegetation in those areas.To clarify the response of soil bacterial community diversity to the changes of environmental factors in different habitats,this study collected soil samples under the canopies of Tamarix ramosissima Ledeb.in oasis,transition zone,and desert habitats in the upper reaches of the Tarim River,Northwest China.High-throughput sequencing technology and PICRUSt2 software were used to explore the composition and function of soil bacterial communities in different habitats of T.ramosissima.The results showed that:(1)soil environmental factors under the canopy of T.ramosissima in the three habitats differed significantly,with soil moisture and nutrient conditions being better in the oasis;(2)Proteobacteria,Bacteroidetes,Firmicutes,Actinobacteria,and Gemmatimonadetes were the major bacterial communities in the three habitats;(3)soil bacterial community composition under the canopy of T.ramosissima varied greatly,and the richness was significantly different among the three habitats;(4)redundancy analysis indicated that soil water content and available phosphorous were the most important environmental factors influencing the composition of soil bacterial community;and(5)6 primary functions and 21 secondary functions were obtained by PICRUSt2 function prediction,with metabolism being the most dominant function.This study revealed the response of soil bacterial community composition to habitat changes and their driving factors in the upper reaches of the Tarim River,which could improve the understanding of ecological sensitivity of soil microorganisms in arid and semi-arid areas,and provide a theoretical foundation for improving soil quality and ecological protection.展开更多
Soil microbial communities play a crucial role in forest ecological processes,but the differences between rhizosphere and non-rhizosphere soils,as well as their variations with stand ages remain unclear.We collected r...Soil microbial communities play a crucial role in forest ecological processes,but the differences between rhizosphere and non-rhizosphere soils,as well as their variations with stand ages remain unclear.We collected rhizosphere and non-rhizosphere soils in Castanopsis hystrix plantations at ages(6,10,15,25,30 and 34 years)in the southern subtropics and analyzed soil microbial communities using the phospholipid fatty acid(PLFA)method.There were significant differences in microbial communities between the two.Rhizosphere soils had higher total PLFAs and fungal to bacterial(F:B)ratios,and lower arbuscular mycorrhizal fungi to ectomycorrhizal fungi(AMF:EMF)ratios in the 34-year-old stand but microbial communities in non-rhizosphere soils showed no changes with stand age.Rhizosphere soils had higher total PLFAs and F:B ratios but lower AMF:EMF ratios.Further analysis revealed a strong correlation between fine root nutrients and rhizosphere soil PLFAs,indicating a closer interaction between root exudates and microbial communities.In contrast,non-rhizosphere soil PLFAs appeared to be more influenced by soil nitrogen availability.Overall,soil microbial communities exhibited significant differences between rhizosphere and non-rhizosphere soils over various stand ages.A strong correlation was observed between rhizosphere soil PLFAs and fine root nutrients,which may improve our understanding of forest management strategies.展开更多
[Objective] The objective of this study was to investigate the effects of different agricultural managements on soil microbial population,activity,functional diversity and soil enzyme activity in continuous mono-cropp...[Objective] The objective of this study was to investigate the effects of different agricultural managements on soil microbial population,activity,functional diversity and soil enzyme activity in continuous mono-cropping field of strawberry.[Method]A field plot experiment was carried out to evaluate characteristics of soil microbial community by soil enzyme analysis,microbial cultivation and Biolog analysis.[Result]The results showed that bacteria population proportion,the ration of bacteria to fungi,microorganism amount,AWCD,soil dehydrogenase activity,the Shannon,Simpson,and Mcintosh indices of soil microbial communities were obviously increased under strawberry-rice rotation,soil solarization with rice bran,and calcium cyanamide（CaCN2）treatments,in addition,soil urease activity was significantly increased under strawberry-rice rotation and soil solarization with rice bran treatment,when compared with no fertilization.When compared with conventional fertilization treatment,strawberry-rice rotation and soil solarization with rice bran both significantly increased AWCD and Mcintosh index of soil microbial communities,meanwhile respectively increased soil urease and dehydrogenase activity.PCA analyses suggested that carbon utilization of soil microbial communities under strawberry-rice rotation,soil solarization with rice bran,and calcium cyanamide treatment was obviously different from that of conventional fertilization and no fertilization treatment.[Conclusion] strawberry-rice rotation and soil solarization with rice bran were effective agricultural managements to control soil biological degradation under Continuous Cropped Strawberry.展开更多
As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the ...As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the preprocessing meth- ods reported in the literatures were not the same. In order to screen the best pre- processing method, this paper took three typical treatments to explore the effect of different preprocessing methods on soil microbial community functional diversity. The results showed that, method B＇s overall trend of AWCD values was better than A and C＇s. Method B＇s microbial utilization of six carbon sources was higher, and the result was relatively stable. The Simpson index, Shannon richness index and Car- bon source utilization richness index of the two treatments were B〉C〉A, while the Mclntosh index and Shannon evenness were not very stable, but the difference of variance analysis was not significant, and the method B was always with a smallest variance. Method B＇s principal component analysis was better than A and C＇s. In a word, the method using 250 r/min shaking for 30 minutes and cultivating at 28 ℃ was the best one, because it was simple, convenient, and with good repeatability.展开更多
The dissolution of minerals plays an important role in the formation of soils and sediments. In nutrient limiting soils, minerals constitute a major reservoir of bio-essential cations. Of particular interest is granit...The dissolution of minerals plays an important role in the formation of soils and sediments. In nutrient limiting soils, minerals constitute a major reservoir of bio-essential cations. Of particular interest is granite as it is the major rock type of the continental land mass. Although certain bacteria have been shown to enhance weathering of granite-forming minerals, little is known about the dissolution of granite, at the whole rock scale, and the microbial community involved. In this study, both culture-independent and culture-dependent approaches were used to study the bacterial community at the interface between granite bedrock and nutrient limiting soil in Dartmoor National Park, United Kingdom. High throughput sequencing demonstrated that over 70% of the bacterial population consisted of the bacterial classes Bacilli, Beta-proteobacteria and Gamma-proteo-bacteria. Bacteria belonging to the genera Serratia, Pseudomonas, Bacillus, Paenibacillus, Chromo-bacterium and Burkholderia were isolated from the sample site. All of the isolates were able to grow in a minimal growth medium, which contained glucose and ammonium chloride, with granite as the sole source of bio-essential elements. Sixty six percent of the isolates significantly enhanced basalt dissolution (p < 0.05). Dissolution of Si, K, Ca and Mg correlated with production of oxalic acid and acidification. The results of this study suggest that microorganisms in nutrient limiting soils can enhance the rate of granite dissolution, which is an important part of the biogeochemical cycle.展开更多
Using a scheme of agricultural fields with progressively less intensive management (deintensification), different manage- ment practices in six agroecosystems located near Goldsboro, NC, USA were tested in a large-sca...Using a scheme of agricultural fields with progressively less intensive management (deintensification), different manage- ment practices in six agroecosystems located near Goldsboro, NC, USA were tested in a large-scale experiment, including two cash-grain cropping systems employing either tillage (CT) or no-tillage (NT), an organic farming system (OR), an integrated cropping system with animals (IN), a successional field (SU), and a plantation woodlot (WO). Microbial phos- pholipid fatty acid (PLFA) profiles and substrate utilization patterns (BIOLOG ECO plates) were measured to examine the effects of deintensification on the structure and diversity of soil microbial communities. Principle component analyses of PLFA and BIOLOG data showed that the microbial community structure diverged among the soils of the six systems. Lower microbial diversity was found in lowly managed ecosystem than that in intensive and moderately managed agro- ecosystems, and both fungal contribution to the total identified PLFAs and the ratio of microbial biomass C/N increased along with agricultural deintensification. Significantly higher ratios of C/N (P < 0.05) were found in the WO and SU systems, and for fungal/bacterial PLFAs in the WO system (P < 0.05). There were also significant decreases (P < 0.05) along with agricultural deintensification for contributions of total bacterial and gram positive (G+) bacterial PLFAs. Agricultural deintensification could facilitate the development of microbial communities that favor soil fungi over bacteria.展开更多
The ecological effect of reclaimed water irrigation and fertilizer application on the soil environment is receiving more attention.Soil microbial activity and nitrogen（N）levels are important indicators of the effect...The ecological effect of reclaimed water irrigation and fertilizer application on the soil environment is receiving more attention.Soil microbial activity and nitrogen（N）levels are important indicators of the effect of reclaimed water irrigation on environment.This study evaluated soil physicochemical properties and microbial community structure in soils irrigated with reclaimed water and receiving varied amounts of N fertilizer.The results indicated that the reclaimed water irrigation increased soil electrical conductivity（EC）and soil water content（SWC）.The N treatment has highly significant effect on the ACE,Chao,Shannon（H）and Coverage indices.Based on a 16S ribosomal RNA（16S rRNA）sequence analysis,the Proteobacteria,Gemmatimonadetes and Bacteroidetes were more abundant in soil irrigated with reclaimed water than in soil irrigated with clean water.Stronger clustering of microbial communities using either clean or reclaimed water for irrigation indicated that the type of irrigation water may have a greater influence on the structure of soil microbial community than N fertilizer treatment.Based on a canonical correspondence analysis（CCA）between the species of soil microbes and the chemical properties of the soil,which indicated that nitrate N（NO3-–-N）and total phosphorus（TP）had significant impact on abundance of Verrucomicrobia and Gemmatimonadetes,meanwhile the p H and organic matter（OM）had impact on abundance of Firmicutes and Actinobacteria significantly.It was beneficial to the improvement of soil bacterial activity and fertility under 120 mg kg^-1 N with reclaimed water irrigation.展开更多
Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small water...Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small watershed of subtropical region of China was selected for this study. Land uses covered paddy fields, vegetable farming, fruit trees, upland crops, bamboo stands, and forestry. Soil biological and biochemical properties included soil organic C and nutrient contents, mineralization of soil organic C, and soil microbial biomass and community functional diversity. Soil organic C and total N contents, microbial biomass C and N, and respiration intensity under different land uses were changed in the following order： paddy fields （and vegetable farming） 〉 bamboo stands 〉 fruit trccs （and upland）. The top surface （0-15 cm） paddy fields （and vegetable farming） were 76.4 and 80.8% higher in soil organic C and total N contents than fruit trees （and upland） soils, respectively. Subsurface paddy soils （15-30 cm） were 59.8 and 67.3% higher in organic C and total N than upland soils, respectively. Soil microbial C, N and respiration intensity in paddy soils （0-15 cm） were 6.36, 3.63 and 3.20 times those in fruit tree （and upland） soils respectively. Soil microbial metabolic quotient was in the order： fruit trees （and upland） 〉 forestry 〉 paddy fields. Metabolic quotient in paddy soils was only 47.7% of that in fruit tree （and upland） soils. Rates of soil organic C mineralization during incubation changed in the order： paddy fields 〉 bamboo stands 〉 fruit trees （and upland） and soil bacteria population： paddy fields 〉 fruit trees （and upland） 〉 forestry. No significant difference was found for fungi and actinomycetes populations. BIOLOG analysis indicated a changing order of paddy fields 〉 fruit trees （and upland） 〉 forestry in values of the average well cell development （AWCD） and functional diversity indexes of microbial community. Results also showed that the conversion from paddy fields to vegetable farming for 5 years resulted in a dramatic increase in soil available phosphorus content while insignificant changes in soil organic C and total N content due to a large inputs of phosphate fertilizers. This conversion caused 53, 41.5, and 41.3% decreases in soil microbial biomass C, N, and respiration intensity, respectively, while 23.6% increase in metabolic quotient and a decrease in soil organic C mineralization rate. Moreover, soil bacteria and actinomycetes populations were increased slightly, while fungi population increased dramatically. Functional diversity indexes of soil microbial community decreased significantly. It was concluded that land uses in the subtropical region of China strongly affected soil biological and biochemical properties. Soil organic C and nutrient contents, mineralization of organic C and functional diversity of microbial community in paddy fields were higher than those in upland and forestry. Overuse of chemical fertilizers in paddy fields with high fertility might degrade soil biological properties and biochemical function, resulting in deterioration of soil biological quality.展开更多
Understanding the vertical distribution patterns of soil microbial community and its driving factors in alpine grasslands in the humid regions of the Tibet Plateau might be of great significance for predicting the soi...Understanding the vertical distribution patterns of soil microbial community and its driving factors in alpine grasslands in the humid regions of the Tibet Plateau might be of great significance for predicting the soil microbial community of this type of vegetation in response to environmental change. Using phospholipid fatty acids （PLFA）, we investigated soil microbial community composition along an elevational gradient （3094-4131 m above sea level） on Mount Yajiageng, and we explored the impact of plant functional groups and soil chemistry on the soil microbial community. Except for Arbuscular Mycorrhizal fungi （AM fungi） biomarker 18：2ω6,9 increasing significantly, other biomarkers did not show a consistent trend with the elevational gradient. Microbial biomass quantified by total PLFAs did not show the elevational trend and had mean values ranging from 1.64 to 4.09 ktmol per g organic carbon （OC）, which had the maximum value at the highest site. Bacterial PLFAs exhibited a similar trend with total PLFAs, and its mean values ranged from 0.82 to 1.81 μmol （g OC）-1. The bacterial to fungal biomass ratios had the minimum value at the highest site, which might be related to temperature and soil total nitrogen （TN）. The ratios of Gram-negative to Gram-positive bacteria had a significantly negative correlation with soil TN and had the maximum value at the highest site. Leguminous plant coverage and soil TN explained 58% of the total variation in the soil microbial community and could achieve the same interpretation as the whole model. Other factors may influence the soil microbial community through interaction with leguminous plant coverage and soil TN. Soil chemistry and plant functional group composition in substantial amounts explained different parts of the variation within the soil microbial community, and the interaction between them had no impact on the soil microbial community maybe beeause long-term grazing greatly reduces litter. In sum, although there were obvious differences in soil microbial communities along the elevation gradient, there were no clear elevational trends found in general. Plant functional groups and soil chemistry respectively affect the different aspects of soil microbial community. Leguminous plant coverage and soil TN had important effects in shaping soil microbial community.展开更多
Biofumigation is an environmentally friendly strategy used to control nematodes and plant diseases.The volatile oil of Zanthoxylum bungeanum has high insecticidal and antibacterial activity.However,it is not known if ...Biofumigation is an environmentally friendly strategy used to control nematodes and plant diseases.The volatile oil of Zanthoxylum bungeanum has high insecticidal and antibacterial activity.However,it is not known if the seed of Z.bungeanum is a suitable material for biofumigation to control southern root-knot nematodes(SRKN)on tomato,and how it may regulate the soil bacterial community structure.We used pot experiments in the greenhouse to determine the effects of Z.bungeanum seeds on SRKN,plant growth parameters,soil physicochemical and microbial characteristics.A total of 26 volatile components,including nematicidally active substances,were identified from Z.bungeanum seeds.Z.bungeanum seed biofumigation significantly reduced the SRKN population by 88.89%and 81.55%on the 50th and 100th day after transplanting,respectively.Compared to the control,the total soluble sugar,soluble solids,soluble protein,titratable acid,root activity and the fruit yield per tomato plant increased significantly.The content of soil alkali-hydrolyzed nitrogen,available potassium and the soil enzyme activities were also significantly increased.The soil bacterial diversity and the co-occurrence network complexity were increased by Z.bungeanum seed biofumigation.Relativelymore keystone OTUs in biofumigation soil had potential plant growth-promoting capabilities.The function of Z.bungeanum seed increasing tomato production in SRKN-infected soil depends on directly killing SRKN and improving soil properties.These results indicate that Z.bungeanum seed can be used as both a nematicide and a high quality organic fertilizer in tomato production.展开更多
Long-term deposition of atmospheric pollutants emitted from coal combustion and their effects on the eco-environment have been extensively studied around coal-fired power plants.However,the effects of coal-fired power...Long-term deposition of atmospheric pollutants emitted from coal combustion and their effects on the eco-environment have been extensively studied around coal-fired power plants.However,the effects of coal-fired power plants on soil microbial communities have received little attention through atmospheric pollutant deposition and coal-stacking.Here,we collected the samples of power plant soils(PS),coal-stacking soils(CSS)and agricultural soils(AS)around three coal-fired power plants and background control soils(BG)in Huainan,a typical mineral resource-based city in East China,and investigated the microbial diversity and community structures through a high-throughput sequencing technique.Coal-stacking significantly increased(p<0.05)the contents of total carbon,total nitrogen,total sulfur and Mo in the soils,whereas the deposition of atmospheric pollutants enhanced the levels of V,Cu,Zn and Pb.Proteobacteria,Actinobacteria,Thaumarchaeota,Thermoplasmata,Ascomycota and Basidiomycota were the dominant taxa in all soils.The bacterial community showed significant differences(p<0.05)among PS,CSS,AS and BG,whereas archaeal and fungal communities showed significant differences(p<0.01)according to soil samples around three coal-fired power plants.The predominant environmental variables affecting soil bacterial,archaeal and fungal communities were Mo-TN-TS,Cu-V-Mo,and organic matter(OM)-Mo,respectively.Certain soil microbial genera were closely related to multiple key factors associated with stacking coal and heavy metal deposition from power plants.This study provided useful insight into better understanding of the relationships between soil microbial communities and long-term disturbances from coal-fired power plants.展开更多
An understanding of soil microbial communities is crucial in roadside soil environmental assessments.The 16S rRNA se quencing of a stressed microbial community in soil adjacent to the Qinghai-Tibet Highway(QTH)reveale...An understanding of soil microbial communities is crucial in roadside soil environmental assessments.The 16S rRNA se quencing of a stressed microbial community in soil adjacent to the Qinghai-Tibet Highway(QTH)revealed that the accu mulation of heavy metals(over about 10 years)has affected the diversity of bacterial abundance and microbial community structure.The proximity of a sampling site to the QTH/Qinghai-Tibet Railway(QTR),which is effectively a measure of the density of human engineering,was the dominant factor influencing bacterial community diversity.The diversity of bacterial communities shows that 16S rRNA gene abundance decreased in relation to proximity to the QTH and QTR in both alpine wetland and meadow areas.The dominant phyla across all samples were Actinobacteria and Proteobacteria.The concentration of Cr and Cd in the soil were positively correlated with proximity to the QTH and QTR(MC/WC sam pling sites),and Ni,Co,and V were positively correlated with proximity to the QTH and QTR(MA/WA sampling sites).The results presented in this study provide an insight into the relationships among heavy metals and soil microbial commu nities,and have important implications for assessing and predicting the impacts of human-induced activities from the QTH and QTR in such an extreme and fragile environment.展开更多
In this study, we selected yttrium as the representative of REEs to investigate the impacts of exogenous yttrium on soil physicochemical properties and microbiota. The results showed that exogenous yttrium has no sign...In this study, we selected yttrium as the representative of REEs to investigate the impacts of exogenous yttrium on soil physicochemical properties and microbiota. The results showed that exogenous yttrium has no significant effect on soil physical properties but a significantly negative impact on soil chemical properties. The results of high-throughput sequencing demonstrate that exogenous yttrium significantly decreases the number of OTUs, ACE, Chao 1, and Shannon indices while increases the Simpson index（P 〈 0.05）, indicating the low soil microbial diversity. The relative abundances of soil microbes are significantly changed at phylum and genus level. Principal component analysis（PCA） showed the significant difference of microbial community between yttrium treatments（YCl_3-250 and YCl_3-500） and non-yttrium treatment（CK） and the similarity of that between YCl_3-250 and YCI_3-500. Proteobacteria and Bacteroidetes are found to be the most tolerant phyla to exogenous yttrium while Verrucomicrobia the most sensitive phylum. Redundancy analysis（RDA） results suggest that exogenous yttrium affects soil microbiota only through changing the soil chemical properties but not soil physical properties, and C/N ratio is the key environmental factor.展开更多
Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental ...Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental characteristics especially organic carbon availability after 15-yr different organic and inorganic fertilizer inputs on soil bacterial community structure and functional metabolic diversity of soil microbial communities were evaluated in a 15-yr fertilizer experiment in Changping County, Beijing, China. The experiment was a wheat-maize rotation system which was established in 1991 including four different fertilizer treatments. These treatments included： a non-amended control（CK）, a commonly used application rate of inorganic fertilizer treatment（NPK）; a commonly used application rate of inorganic fertilizer with swine manure incorporated treatment（NPKM）, and a commonly used application rate of inorganic fertilizer with maize straw incorporated treatment（NPKS）. Denaturing gradient gel electrophoresis（DGGE） of the 16 S r RNA gene was used to determine the bacterial community structure and single carbon source utilization profiles were determined to characterize the microbial community functional metabolic diversity of different fertilizer treatments using Biolog Eco plates. The results indicated that long-term fertilized treatments significantly increased soil bacterial community structure compared to CK. The use of inorganic fertilizer with organic amendments incorporated for long term（NPKM, NPKS） significantly promoted soil bacterial structure than the application of inorganic fertilizer only（NPK）, and NPKM treatment was the most important driver for increases in the soil microbial community richness（S） and structural diversity（H）. Overall utilization of carbon sources by soil microbial communities（average well color development, AWCD） and microbial substrate utilization diversity and evenness indices（H＇ and E） indicated that long-term inorganic fertilizer with organic amendments incorporated（NPKM, NPKS） could significantly stimulate soil microbial metabolic activity and functional diversity relative to CK, while no differences of them were found between NPKS and NPK treatments. Principal component analysis（PCA） based on carbon source utilization profiles also showed significant separation of soil microbial community under long-term fertilization regimes and NPKM treatment was significantly separated from the other three treatments primarily according to the higher microbial utilization of carbohydrates, carboxylic acids, polymers, phenolic compounds, and amino acid, while higher utilization of amines/amides differed soil microbial community in NPKS treatment from those in the other three treatments. Redundancy analysis（RDA） indicated that soil organic carbon（SOC） availability, especially soil microbial biomass carbon（Cmic） and Cmic/SOC ratio are the key factors of soil environmental characteristics contributing to the increase of both soil microbial community structure and functional metabolic diversity in the long-term fertilization trial. Our results showed that long-term inorganic fertilizer and swine manure application could significantly improve soil bacterial community structure and soil microbial metabolic activity through the increases in SOC availability, which could provide insights into the sustainable management of China＇s soil resource.展开更多
Coastal wetlands are the most productive ecosystems worldwide and can provide important ecosystem services,yet the characteristics of microbial community within these systems remain poorly understood.Microbial communi...Coastal wetlands are the most productive ecosystems worldwide and can provide important ecosystem services,yet the characteristics of microbial community within these systems remain poorly understood.Microbial community of salt marsh vegetation and the associated soil physio-chemical properties were investigated in this study.Three typical Suaeda australis,Phragmites australis,Spartina alterniflora wetlands,and non-vegetated bare mudflats in the Zhoushan Islands were studied to advance the understanding of the characteristics of soil bacterial communities in coastal wetlands.Results showed that the bare mudflats exhibited high pH value and soil moisture content compared with the vegetated samples.In different vegetation types,the organic matter content,total nitrogen,and total potassium content decreased in the order:S.alterniflora wetland>P.australis wetland>S.australis wetland,and there was no obvious difference in total phosphorous content.The halophytes could decrease soil salinity compared with bare mudflats.Proteobacteria,Nitrospinae,Bacteroidetes,Acidobacteria,and Nitrospirae were the predominant level across all samples.Functional prediction showed that SPA-covered soil might play vital roles in sulphur cycling,while SUA and PHR covered soils were involved in nitrogen cycling.This study could provide the first insight into the microbial community of this study area and contribute to a better understanding of vegetation microbiota and bioremediation in coastal wetland ecosystem.展开更多
The eff ect of seasons on the soil microbiome in a Larix gmelinii forest of Mohe,China,where winter temperatures are generally below−40°C,was evaluated with metagenomics analysis.Taxonomic profi ling using sequen...The eff ect of seasons on the soil microbiome in a Larix gmelinii forest of Mohe,China,where winter temperatures are generally below−40°C,was evaluated with metagenomics analysis.Taxonomic profi ling using sequencing information revealed that Proteobacteria,Actinobacteria,Acidobacteria and Verrucomicrobia were the dominant phyla in spring,summer,and fall,as were Bradyrhizobium,Chthoniobacter,Streptomyces,Acid Candidatus Koribacter at the genus level.Some species that were abundant in spring and fall greatly diminished in abundance in summer.Clusters of orthologous groups(COG)of proteins,carbohydrate-active enzymes(CAZy),Kyoto Encyclopedia of Genes and Genomes(KEGG)and NCBI databases were used to elucidate the function of diverse proteins and metabolites of the microbial community of L.gmelinii forest.COG analysis showed that fewer genes were detected in spring than in fall and summer,indicating that many soil microbes in the L.gmelinii forest were not tolerant to cold.Based on KEGG analysis,some pathways in the soil microbes were activated in spring and autumn and deactivated in summer.CAZy analysis revealed that most CAZy were more active in summer than in spring or autumn and were severely inhibited in the spring.Many functional pathways,proteins,and CAZy involved in the community changes were concerned with cold or heat resistance.Therefore,the soil in the L.gmelinii forest can be a valuable resource for further research on heat and cold tolerance of soil microbes.展开更多
Soil fungi are extremely important for maintaining soil health and plant production in agricultural systems.Currently,the effect of continuous cropping of sweet potato on soil fungal communities and physiochemical par...Soil fungi are extremely important for maintaining soil health and plant production in agricultural systems.Currently,the effect of continuous cropping of sweet potato on soil fungal communities and physiochemical parameters has not been well documented.In the present study,four sweet potato fields consecutively monocultured for 1,2,3,and 4 years were selected to investigate the effect of monoculture on soil fungal communities through Illumina MiSeq sequencing.Continuous cropping of sweet potatoes dramatically altered the fungal community composition,whereas fungal diversity was almost unchanged.Ascomycota and Basidiomycota were the most abundant phyla in all soil samples,accounting for 32.59%and 21.14%of the average relative abundance,respectively.The abundance of some potential pathogens,such as Ascobolus spp,specifically Ascobolus stercorarius,and some unknown fungi increased significantly as the sweet potato monoculture period increased,and their presence were highly positively correlated with disease incidence.In contrast,Basidiomycota,Bullera,Fusarium and Trichocladium most likely play roles as antagonists of sweet potato disease development,as their relative abundance decreased significantly over time and were negatively correlated with disease incidence.Redundancy and correlation analyses revealed that soil pH and organic carbon content were the most important factors driving these changes.Our findings provided a dynamic overview of the fungal community and presented a clear scope for screening beneficial fungi and pathogens of sweet potato.展开更多
Chinese hickory(Carya cathayensis Sarg.)is an important economic forest in Southeastern China.A large amount of hickory husk waste is generated every year but with a low proportion of returning.Meanwhile,intensive man...Chinese hickory(Carya cathayensis Sarg.)is an important economic forest in Southeastern China.A large amount of hickory husk waste is generated every year but with a low proportion of returning.Meanwhile,intensive management has resulted in soil degradation of Chinese hickory plantations.This study aims to investigate the effects of three Chinese hickory husk returning modes on soil amendment,including soil acidity,soil nutrition,and microbial community.The field experiment carried out four treatments:control(CK),hickory husk mulching(HM),hickory husk biochar(BC),and hickory husk organic fertilizer(OF).The phospholipid fatty acid(PLFA)biomarker method was employed to determine the soil microbial community.After one year of treatment,the results showed that:(i)HM and BC significantly increased soil pH by 0.33 and 1.71 units,respectively;(ii)HM,BC and OF treatments significantly increased the soil organic carbon,alkaline nitrogen,available phosphorous,and available potassium.The OF treatment demonstrated the most significant improvement in the soil nutrient;(iii)The soil microbial biomass significantly increased in the HM,BC and OF treatments,and all microbial groups showed an increasing trend.HM treatment increased the fungal/bacterial ratio(F/B).The OF treatment significantly decreased the Shannon-Wiener diversity(H’)and evenness index(J)of the microbial community(P<0.05).Considering the treatments effects,costs,and ease of operation,our recommended returning modes of Chinese hickory husk are mulching and organic fertilizer produced by composting with manure.展开更多
In this paper,managed forest(MF)and natural forest(NF)in the Huajiang Demonstration Zone of Guanling,Guizhou were selected as research objects,and cropland(CL)was taken as control.High-throughput sequencing technology...In this paper,managed forest(MF)and natural forest(NF)in the Huajiang Demonstration Zone of Guanling,Guizhou were selected as research objects,and cropland(CL)was taken as control.High-throughput sequencing technology was used to study the characteristics of fungal community composition and species diversity in the surface(0-10 cm)soil of each restoration measure,in order to reveal the dominant soil fungal groups and fungal community composition in karst rocky desertification areas,which was conducive to a more comprehensive understanding of the soil conditions of different vegetation restoration measures.Research has shown that vegetation restoration significantly affected the diversity of soil fungal community,with significant increases in Sob index,Ace index,and Chao index.The vegetation restoration has significantly changed the composition of fungal community.The dominant fungi in the CL topsoil are Sordariomycetes(62.28%),Dothideomycetes(12.34%),and Eurotiomycetes(9.12%);the dominant fungi in the MF soil are Sordariomycetes(45.05%),Dothideomycetes(14.74%),and Mortierellomycetes(10.40%);the dominant fungi in the NF soil are unclassified fungal community(26.38%),Sordariomycetes(19.78%),and Agaricomycetes(13.82%).Vegetation restoration has changed the key fungal groups in the soil.Sordariomycetes,Fusarium,and Setophoma are the key dominant fungal groups in CL soil;Dioszegia is key dominant fungal group in MF soil;c_unclassified_k_Fungi,p_unclassified_k_Fungi,o_unclassified_k_Fungi,f_unclassified_k_Fungi,g_unclassified_k_Fungi,Teichospora,and Diaporthe are key dominant fungal groups in NF soil.展开更多
The leaves of multiple invasive plants can coexist and intermingle within the same environment.As species number of invasive plants increases,variations may occur in decomposition processes of invasive plants,soil nut...The leaves of multiple invasive plants can coexist and intermingle within the same environment.As species number of invasive plants increases,variations may occur in decomposition processes of invasive plants,soil nutrient contents,soil enzyme activities,and soilmicrobial community structure.Existing progress have predominantly focused on the ecological effects of one species of invasive plant compared to native species,with limited attention paid to the ecological effects of multiple invasive plants compared to one species of invasive plant.This study aimed to determine the differences in the effects of mono-and co-decomposition of four Asteraceae invasive plants,horseweed(Erigeron canadensis(L.)Cronq.),Guernsey fleabane(E.sumatrensis Retz.),daisy fleabane(E.annuus(L.)Pers.),and Canada goldenrod(Solidago canadensis L.),on litter decomposition responses,soil carbon contents,soil enzyme activities,and soil bacterial community structure.Species number of invasive plants did not significantly affect on the decomposition rate of mixed leaves or mixed-effect intensity of co-decomposition.Soil pH and electrical conductivity enhanced as species number of invasive plants increased.Soil carbon contents(including soluble organic carbon content and microbial carbon content),soil enzyme(including polyphenol oxidase,FDA hydrolase,and sucrase)activities,soil bacterial alpha diversity(including the OTU species,Chao1 richness,ACE richness,and Phylogenetic diversity indexes),and the number of pathways of most functional genes of soil bacterial communities closely related to decomposition processes declined as species number of invasive plants increased.Hence,soil pH and electrical conductivity significantly increased with increasing species number of invasive plants,but soil carbon contents,soil enzyme activities,soil bacterial alpha diversity,and the number of pathways of most functional genes of soil bacterial communities closely related to decomposition processes significantly reduced with growing species number of invasive plants.展开更多
基金supported by the Sciences Foundation of Xinjiang Uygur Autonomous Region(2024D01C32)the Xinjiang Uygur Autonomous Region Education Department Basic Scientific Project(XJEDU2023P005)+1 种基金the National Natural Science Foundation of China(32001145)the 2024 Xinjiang Uygur Autonomous Region Postdoctoral Funding Project.
文摘Diversity of soil microorganisms in different habitats of arid and semi-arid areas plays an important role in the soil texture and nutrient,promoting the growth of vegetation in those areas.To clarify the response of soil bacterial community diversity to the changes of environmental factors in different habitats,this study collected soil samples under the canopies of Tamarix ramosissima Ledeb.in oasis,transition zone,and desert habitats in the upper reaches of the Tarim River,Northwest China.High-throughput sequencing technology and PICRUSt2 software were used to explore the composition and function of soil bacterial communities in different habitats of T.ramosissima.The results showed that:(1)soil environmental factors under the canopy of T.ramosissima in the three habitats differed significantly,with soil moisture and nutrient conditions being better in the oasis;(2)Proteobacteria,Bacteroidetes,Firmicutes,Actinobacteria,and Gemmatimonadetes were the major bacterial communities in the three habitats;(3)soil bacterial community composition under the canopy of T.ramosissima varied greatly,and the richness was significantly different among the three habitats;(4)redundancy analysis indicated that soil water content and available phosphorous were the most important environmental factors influencing the composition of soil bacterial community;and(5)6 primary functions and 21 secondary functions were obtained by PICRUSt2 function prediction,with metabolism being the most dominant function.This study revealed the response of soil bacterial community composition to habitat changes and their driving factors in the upper reaches of the Tarim River,which could improve the understanding of ecological sensitivity of soil microorganisms in arid and semi-arid areas,and provide a theoretical foundation for improving soil quality and ecological protection.
基金funded by the Science and Technology Program of Guangdong(Grant Nos 2024B1212080005 and2024B1212070012)the National Natural Science Foundation of China(Grant Nos 32101342 and 42207158)+1 种基金Guangdong Flagship Project of Basic and Applied Basic Research(Grant No 2023B0303050001)the Science and Technology Projects in Guangzhou(Grant No E33309)。
文摘Soil microbial communities play a crucial role in forest ecological processes,but the differences between rhizosphere and non-rhizosphere soils,as well as their variations with stand ages remain unclear.We collected rhizosphere and non-rhizosphere soils in Castanopsis hystrix plantations at ages(6,10,15,25,30 and 34 years)in the southern subtropics and analyzed soil microbial communities using the phospholipid fatty acid(PLFA)method.There were significant differences in microbial communities between the two.Rhizosphere soils had higher total PLFAs and fungal to bacterial(F:B)ratios,and lower arbuscular mycorrhizal fungi to ectomycorrhizal fungi(AMF:EMF)ratios in the 34-year-old stand but microbial communities in non-rhizosphere soils showed no changes with stand age.Rhizosphere soils had higher total PLFAs and F:B ratios but lower AMF:EMF ratios.Further analysis revealed a strong correlation between fine root nutrients and rhizosphere soil PLFAs,indicating a closer interaction between root exudates and microbial communities.In contrast,non-rhizosphere soil PLFAs appeared to be more influenced by soil nitrogen availability.Overall,soil microbial communities exhibited significant differences between rhizosphere and non-rhizosphere soils over various stand ages.A strong correlation was observed between rhizosphere soil PLFAs and fine root nutrients,which may improve our understanding of forest management strategies.
基金Supported by the National Science and Technology Funds for Agriculture(2009GB24910540)Special fund for National Public Service Sectors(Agriculture)Research(200903011)+1 种基金Natural Science Fund Project of Hohai University(2008429811)Central University Basic Research Operating Expenses Project(2010B05314)~~
文摘[Objective] The objective of this study was to investigate the effects of different agricultural managements on soil microbial population,activity,functional diversity and soil enzyme activity in continuous mono-cropping field of strawberry.[Method]A field plot experiment was carried out to evaluate characteristics of soil microbial community by soil enzyme analysis,microbial cultivation and Biolog analysis.[Result]The results showed that bacteria population proportion,the ration of bacteria to fungi,microorganism amount,AWCD,soil dehydrogenase activity,the Shannon,Simpson,and Mcintosh indices of soil microbial communities were obviously increased under strawberry-rice rotation,soil solarization with rice bran,and calcium cyanamide（CaCN2）treatments,in addition,soil urease activity was significantly increased under strawberry-rice rotation and soil solarization with rice bran treatment,when compared with no fertilization.When compared with conventional fertilization treatment,strawberry-rice rotation and soil solarization with rice bran both significantly increased AWCD and Mcintosh index of soil microbial communities,meanwhile respectively increased soil urease and dehydrogenase activity.PCA analyses suggested that carbon utilization of soil microbial communities under strawberry-rice rotation,soil solarization with rice bran,and calcium cyanamide treatment was obviously different from that of conventional fertilization and no fertilization treatment.[Conclusion] strawberry-rice rotation and soil solarization with rice bran were effective agricultural managements to control soil biological degradation under Continuous Cropped Strawberry.
基金Supported by National and International Scientific and Technological Cooperation Project"The application of Microbial Agents on Mining Reclamation and Ecological Recovery"(2011DFR31230)Key Project of Shanxi academy of Agricultural Science"The Research and Application of Bio-organic Fertilizer on Mining Reclamation and Soil Remediation"(2013zd12)Major Science and Technology Programs of Shanxi Province"Key Technology Research and Demonstration of mining waste land ecosystem Restoration and Reconstruction"(20121101009)~~
文摘As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the preprocessing meth- ods reported in the literatures were not the same. In order to screen the best pre- processing method, this paper took three typical treatments to explore the effect of different preprocessing methods on soil microbial community functional diversity. The results showed that, method B＇s overall trend of AWCD values was better than A and C＇s. Method B＇s microbial utilization of six carbon sources was higher, and the result was relatively stable. The Simpson index, Shannon richness index and Car- bon source utilization richness index of the two treatments were B〉C〉A, while the Mclntosh index and Shannon evenness were not very stable, but the difference of variance analysis was not significant, and the method B was always with a smallest variance. Method B＇s principal component analysis was better than A and C＇s. In a word, the method using 250 r/min shaking for 30 minutes and cultivating at 28 ℃ was the best one, because it was simple, convenient, and with good repeatability.
文摘The dissolution of minerals plays an important role in the formation of soils and sediments. In nutrient limiting soils, minerals constitute a major reservoir of bio-essential cations. Of particular interest is granite as it is the major rock type of the continental land mass. Although certain bacteria have been shown to enhance weathering of granite-forming minerals, little is known about the dissolution of granite, at the whole rock scale, and the microbial community involved. In this study, both culture-independent and culture-dependent approaches were used to study the bacterial community at the interface between granite bedrock and nutrient limiting soil in Dartmoor National Park, United Kingdom. High throughput sequencing demonstrated that over 70% of the bacterial population consisted of the bacterial classes Bacilli, Beta-proteobacteria and Gamma-proteo-bacteria. Bacteria belonging to the genera Serratia, Pseudomonas, Bacillus, Paenibacillus, Chromo-bacterium and Burkholderia were isolated from the sample site. All of the isolates were able to grow in a minimal growth medium, which contained glucose and ammonium chloride, with granite as the sole source of bio-essential elements. Sixty six percent of the isolates significantly enhanced basalt dissolution (p < 0.05). Dissolution of Si, K, Ca and Mg correlated with production of oxalic acid and acidification. The results of this study suggest that microorganisms in nutrient limiting soils can enhance the rate of granite dissolution, which is an important part of the biogeochemical cycle.
基金Project supported by the grants from the US Department of Agriculture, USA (Nos. NRI-1999-35108-8101, NRI-2000-00531, and S-IPM-00-34103-9023), and the Key Projects of the 10th Five-Year Plan of China (No. 2004BA520A14) andScience Foundation of Jiangsu Province, China (No. BK2004002).
文摘Using a scheme of agricultural fields with progressively less intensive management (deintensification), different manage- ment practices in six agroecosystems located near Goldsboro, NC, USA were tested in a large-scale experiment, including two cash-grain cropping systems employing either tillage (CT) or no-tillage (NT), an organic farming system (OR), an integrated cropping system with animals (IN), a successional field (SU), and a plantation woodlot (WO). Microbial phos- pholipid fatty acid (PLFA) profiles and substrate utilization patterns (BIOLOG ECO plates) were measured to examine the effects of deintensification on the structure and diversity of soil microbial communities. Principle component analyses of PLFA and BIOLOG data showed that the microbial community structure diverged among the soils of the six systems. Lower microbial diversity was found in lowly managed ecosystem than that in intensive and moderately managed agro- ecosystems, and both fungal contribution to the total identified PLFAs and the ratio of microbial biomass C/N increased along with agricultural deintensification. Significantly higher ratios of C/N (P < 0.05) were found in the WO and SU systems, and for fungal/bacterial PLFAs in the WO system (P < 0.05). There were also significant decreases (P < 0.05) along with agricultural deintensification for contributions of total bacterial and gram positive (G+) bacterial PLFAs. Agricultural deintensification could facilitate the development of microbial communities that favor soil fungi over bacteria.
基金the financial support for this research from the National High-Tech R&D Program of China (2012AA101404)the National Natural Science Foundation of China (51209208, 51479201)
文摘The ecological effect of reclaimed water irrigation and fertilizer application on the soil environment is receiving more attention.Soil microbial activity and nitrogen（N）levels are important indicators of the effect of reclaimed water irrigation on environment.This study evaluated soil physicochemical properties and microbial community structure in soils irrigated with reclaimed water and receiving varied amounts of N fertilizer.The results indicated that the reclaimed water irrigation increased soil electrical conductivity（EC）and soil water content（SWC）.The N treatment has highly significant effect on the ACE,Chao,Shannon（H）and Coverage indices.Based on a 16S ribosomal RNA（16S rRNA）sequence analysis,the Proteobacteria,Gemmatimonadetes and Bacteroidetes were more abundant in soil irrigated with reclaimed water than in soil irrigated with clean water.Stronger clustering of microbial communities using either clean or reclaimed water for irrigation indicated that the type of irrigation water may have a greater influence on the structure of soil microbial community than N fertilizer treatment.Based on a canonical correspondence analysis（CCA）between the species of soil microbes and the chemical properties of the soil,which indicated that nitrate N（NO3-–-N）and total phosphorus（TP）had significant impact on abundance of Verrucomicrobia and Gemmatimonadetes,meanwhile the p H and organic matter（OM）had impact on abundance of Firmicutes and Actinobacteria significantly.It was beneficial to the improvement of soil bacterial activity and fertility under 120 mg kg^-1 N with reclaimed water irrigation.
基金the National Natural Science Foundation of China （40471066） the Knowledge Innovation Program of the Chinese Academy of Sciences （KZCX3-SW-417）.
文摘Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small watershed of subtropical region of China was selected for this study. Land uses covered paddy fields, vegetable farming, fruit trees, upland crops, bamboo stands, and forestry. Soil biological and biochemical properties included soil organic C and nutrient contents, mineralization of soil organic C, and soil microbial biomass and community functional diversity. Soil organic C and total N contents, microbial biomass C and N, and respiration intensity under different land uses were changed in the following order： paddy fields （and vegetable farming） 〉 bamboo stands 〉 fruit trccs （and upland）. The top surface （0-15 cm） paddy fields （and vegetable farming） were 76.4 and 80.8% higher in soil organic C and total N contents than fruit trees （and upland） soils, respectively. Subsurface paddy soils （15-30 cm） were 59.8 and 67.3% higher in organic C and total N than upland soils, respectively. Soil microbial C, N and respiration intensity in paddy soils （0-15 cm） were 6.36, 3.63 and 3.20 times those in fruit tree （and upland） soils respectively. Soil microbial metabolic quotient was in the order： fruit trees （and upland） 〉 forestry 〉 paddy fields. Metabolic quotient in paddy soils was only 47.7% of that in fruit tree （and upland） soils. Rates of soil organic C mineralization during incubation changed in the order： paddy fields 〉 bamboo stands 〉 fruit trees （and upland） and soil bacteria population： paddy fields 〉 fruit trees （and upland） 〉 forestry. No significant difference was found for fungi and actinomycetes populations. BIOLOG analysis indicated a changing order of paddy fields 〉 fruit trees （and upland） 〉 forestry in values of the average well cell development （AWCD） and functional diversity indexes of microbial community. Results also showed that the conversion from paddy fields to vegetable farming for 5 years resulted in a dramatic increase in soil available phosphorus content while insignificant changes in soil organic C and total N content due to a large inputs of phosphate fertilizers. This conversion caused 53, 41.5, and 41.3% decreases in soil microbial biomass C, N, and respiration intensity, respectively, while 23.6% increase in metabolic quotient and a decrease in soil organic C mineralization rate. Moreover, soil bacteria and actinomycetes populations were increased slightly, while fungi population increased dramatically. Functional diversity indexes of soil microbial community decreased significantly. It was concluded that land uses in the subtropical region of China strongly affected soil biological and biochemical properties. Soil organic C and nutrient contents, mineralization of organic C and functional diversity of microbial community in paddy fields were higher than those in upland and forestry. Overuse of chemical fertilizers in paddy fields with high fertility might degrade soil biological properties and biochemical function, resulting in deterioration of soil biological quality.
基金supported by the CAS/SAFEA International Partnership Program for Creative Research Teams (KZZD-EW-TZ-06)
文摘Understanding the vertical distribution patterns of soil microbial community and its driving factors in alpine grasslands in the humid regions of the Tibet Plateau might be of great significance for predicting the soil microbial community of this type of vegetation in response to environmental change. Using phospholipid fatty acids （PLFA）, we investigated soil microbial community composition along an elevational gradient （3094-4131 m above sea level） on Mount Yajiageng, and we explored the impact of plant functional groups and soil chemistry on the soil microbial community. Except for Arbuscular Mycorrhizal fungi （AM fungi） biomarker 18：2ω6,9 increasing significantly, other biomarkers did not show a consistent trend with the elevational gradient. Microbial biomass quantified by total PLFAs did not show the elevational trend and had mean values ranging from 1.64 to 4.09 ktmol per g organic carbon （OC）, which had the maximum value at the highest site. Bacterial PLFAs exhibited a similar trend with total PLFAs, and its mean values ranged from 0.82 to 1.81 μmol （g OC）-1. The bacterial to fungal biomass ratios had the minimum value at the highest site, which might be related to temperature and soil total nitrogen （TN）. The ratios of Gram-negative to Gram-positive bacteria had a significantly negative correlation with soil TN and had the maximum value at the highest site. Leguminous plant coverage and soil TN explained 58% of the total variation in the soil microbial community and could achieve the same interpretation as the whole model. Other factors may influence the soil microbial community through interaction with leguminous plant coverage and soil TN. Soil chemistry and plant functional group composition in substantial amounts explained different parts of the variation within the soil microbial community, and the interaction between them had no impact on the soil microbial community maybe beeause long-term grazing greatly reduces litter. In sum, although there were obvious differences in soil microbial communities along the elevation gradient, there were no clear elevational trends found in general. Plant functional groups and soil chemistry respectively affect the different aspects of soil microbial community. Leguminous plant coverage and soil TN had important effects in shaping soil microbial community.
基金This project was supported by the Key Research and Development Program of Shandong Province(Grant No.2017GNC13104)Major Agricultural Application Technology Innovation Project of Shandong Province(2018)+1 种基金Shandong Agriculture Research System(Grant No.SDAIT-05-05)Industrial upgrading project of agricultural science of Shandong Province(2017).
文摘Biofumigation is an environmentally friendly strategy used to control nematodes and plant diseases.The volatile oil of Zanthoxylum bungeanum has high insecticidal and antibacterial activity.However,it is not known if the seed of Z.bungeanum is a suitable material for biofumigation to control southern root-knot nematodes(SRKN)on tomato,and how it may regulate the soil bacterial community structure.We used pot experiments in the greenhouse to determine the effects of Z.bungeanum seeds on SRKN,plant growth parameters,soil physicochemical and microbial characteristics.A total of 26 volatile components,including nematicidally active substances,were identified from Z.bungeanum seeds.Z.bungeanum seed biofumigation significantly reduced the SRKN population by 88.89%and 81.55%on the 50th and 100th day after transplanting,respectively.Compared to the control,the total soluble sugar,soluble solids,soluble protein,titratable acid,root activity and the fruit yield per tomato plant increased significantly.The content of soil alkali-hydrolyzed nitrogen,available potassium and the soil enzyme activities were also significantly increased.The soil bacterial diversity and the co-occurrence network complexity were increased by Z.bungeanum seed biofumigation.Relativelymore keystone OTUs in biofumigation soil had potential plant growth-promoting capabilities.The function of Z.bungeanum seed increasing tomato production in SRKN-infected soil depends on directly killing SRKN and improving soil properties.These results indicate that Z.bungeanum seed can be used as both a nematicide and a high quality organic fertilizer in tomato production.
基金supported by the Strategic Priority Research Program of Chinese Academy of Sciences (No.XDB40010200)the National Natural Science Foundation of China (Nos.41976220 and 41776190)the National Key Research and Development Program of China (No.2020YFA0608501)。
文摘Long-term deposition of atmospheric pollutants emitted from coal combustion and their effects on the eco-environment have been extensively studied around coal-fired power plants.However,the effects of coal-fired power plants on soil microbial communities have received little attention through atmospheric pollutant deposition and coal-stacking.Here,we collected the samples of power plant soils(PS),coal-stacking soils(CSS)and agricultural soils(AS)around three coal-fired power plants and background control soils(BG)in Huainan,a typical mineral resource-based city in East China,and investigated the microbial diversity and community structures through a high-throughput sequencing technique.Coal-stacking significantly increased(p<0.05)the contents of total carbon,total nitrogen,total sulfur and Mo in the soils,whereas the deposition of atmospheric pollutants enhanced the levels of V,Cu,Zn and Pb.Proteobacteria,Actinobacteria,Thaumarchaeota,Thermoplasmata,Ascomycota and Basidiomycota were the dominant taxa in all soils.The bacterial community showed significant differences(p<0.05)among PS,CSS,AS and BG,whereas archaeal and fungal communities showed significant differences(p<0.01)according to soil samples around three coal-fired power plants.The predominant environmental variables affecting soil bacterial,archaeal and fungal communities were Mo-TN-TS,Cu-V-Mo,and organic matter(OM)-Mo,respectively.Certain soil microbial genera were closely related to multiple key factors associated with stacking coal and heavy metal deposition from power plants.This study provided useful insight into better understanding of the relationships between soil microbial communities and long-term disturbances from coal-fired power plants.
基金funded by a grant from the Cold and Arid Regions Environmental and the Engineering Research Institute of the Chinese Academy of Sciences Nos. HHS-TSS-STS-1505 and 55Y855Z11, CAS "Light of West China" Program, Frontier Science Research Program of Chineses Academy of Scienc No. QYZDJ- SSW_SMC011
文摘An understanding of soil microbial communities is crucial in roadside soil environmental assessments.The 16S rRNA se quencing of a stressed microbial community in soil adjacent to the Qinghai-Tibet Highway(QTH)revealed that the accu mulation of heavy metals(over about 10 years)has affected the diversity of bacterial abundance and microbial community structure.The proximity of a sampling site to the QTH/Qinghai-Tibet Railway(QTR),which is effectively a measure of the density of human engineering,was the dominant factor influencing bacterial community diversity.The diversity of bacterial communities shows that 16S rRNA gene abundance decreased in relation to proximity to the QTH and QTR in both alpine wetland and meadow areas.The dominant phyla across all samples were Actinobacteria and Proteobacteria.The concentration of Cr and Cd in the soil were positively correlated with proximity to the QTH and QTR(MC/WC sam pling sites),and Ni,Co,and V were positively correlated with proximity to the QTH and QTR(MA/WA sampling sites).The results presented in this study provide an insight into the relationships among heavy metals and soil microbial commu nities,and have important implications for assessing and predicting the impacts of human-induced activities from the QTH and QTR in such an extreme and fragile environment.
基金Project supported by the National Science&Technology Pilslar Program of China during the Twelfth Five-year Plan Period(2012BAC11B07)National Science&Technology Benefiting Program of China(2013GS360203)+5 种基金"Gan Po 555 Project"Leading Talents Training Program,Outstanding Doctoral Dissertation Project Fund of JXUST(YB2016005)Innovation Special Fund for Graduate of Jiangxi Province(YC2014-B059)the Sciences&Technologies Landing Plan of Jiangxi Province for Universities(KJLD14042)the Technology Support Plan of Jiangxi Province(20151BBG70005)the National Natural Science Foundation of China(51564023,21407070)High-end Foreign Experts Project(GDW20177200147)
文摘In this study, we selected yttrium as the representative of REEs to investigate the impacts of exogenous yttrium on soil physicochemical properties and microbiota. The results showed that exogenous yttrium has no significant effect on soil physical properties but a significantly negative impact on soil chemical properties. The results of high-throughput sequencing demonstrate that exogenous yttrium significantly decreases the number of OTUs, ACE, Chao 1, and Shannon indices while increases the Simpson index（P 〈 0.05）, indicating the low soil microbial diversity. The relative abundances of soil microbes are significantly changed at phylum and genus level. Principal component analysis（PCA） showed the significant difference of microbial community between yttrium treatments（YCl_3-250 and YCl_3-500） and non-yttrium treatment（CK） and the similarity of that between YCl_3-250 and YCI_3-500. Proteobacteria and Bacteroidetes are found to be the most tolerant phyla to exogenous yttrium while Verrucomicrobia the most sensitive phylum. Redundancy analysis（RDA） results suggest that exogenous yttrium affects soil microbiota only through changing the soil chemical properties but not soil physical properties, and C/N ratio is the key environmental factor.
基金funded by the National Natural Science Foundation of China(NSFC31301843)the National Nonprofit Institute Research Grant of Chinese Academy of Agricultural Sciences(IARRP-202-5)
文摘Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental characteristics especially organic carbon availability after 15-yr different organic and inorganic fertilizer inputs on soil bacterial community structure and functional metabolic diversity of soil microbial communities were evaluated in a 15-yr fertilizer experiment in Changping County, Beijing, China. The experiment was a wheat-maize rotation system which was established in 1991 including four different fertilizer treatments. These treatments included： a non-amended control（CK）, a commonly used application rate of inorganic fertilizer treatment（NPK）; a commonly used application rate of inorganic fertilizer with swine manure incorporated treatment（NPKM）, and a commonly used application rate of inorganic fertilizer with maize straw incorporated treatment（NPKS）. Denaturing gradient gel electrophoresis（DGGE） of the 16 S r RNA gene was used to determine the bacterial community structure and single carbon source utilization profiles were determined to characterize the microbial community functional metabolic diversity of different fertilizer treatments using Biolog Eco plates. The results indicated that long-term fertilized treatments significantly increased soil bacterial community structure compared to CK. The use of inorganic fertilizer with organic amendments incorporated for long term（NPKM, NPKS） significantly promoted soil bacterial structure than the application of inorganic fertilizer only（NPK）, and NPKM treatment was the most important driver for increases in the soil microbial community richness（S） and structural diversity（H）. Overall utilization of carbon sources by soil microbial communities（average well color development, AWCD） and microbial substrate utilization diversity and evenness indices（H＇ and E） indicated that long-term inorganic fertilizer with organic amendments incorporated（NPKM, NPKS） could significantly stimulate soil microbial metabolic activity and functional diversity relative to CK, while no differences of them were found between NPKS and NPK treatments. Principal component analysis（PCA） based on carbon source utilization profiles also showed significant separation of soil microbial community under long-term fertilization regimes and NPKM treatment was significantly separated from the other three treatments primarily according to the higher microbial utilization of carbohydrates, carboxylic acids, polymers, phenolic compounds, and amino acid, while higher utilization of amines/amides differed soil microbial community in NPKS treatment from those in the other three treatments. Redundancy analysis（RDA） indicated that soil organic carbon（SOC） availability, especially soil microbial biomass carbon（Cmic） and Cmic/SOC ratio are the key factors of soil environmental characteristics contributing to the increase of both soil microbial community structure and functional metabolic diversity in the long-term fertilization trial. Our results showed that long-term inorganic fertilizer and swine manure application could significantly improve soil bacterial community structure and soil microbial metabolic activity through the increases in SOC availability, which could provide insights into the sustainable management of China＇s soil resource.
基金supported by the grant from the Postdoctoral Advance Programs of Zhejiang Province and Scientific Project Establishment of Huadong Engineering Corporation Limited(No.KY2020-SD-11).
文摘Coastal wetlands are the most productive ecosystems worldwide and can provide important ecosystem services,yet the characteristics of microbial community within these systems remain poorly understood.Microbial community of salt marsh vegetation and the associated soil physio-chemical properties were investigated in this study.Three typical Suaeda australis,Phragmites australis,Spartina alterniflora wetlands,and non-vegetated bare mudflats in the Zhoushan Islands were studied to advance the understanding of the characteristics of soil bacterial communities in coastal wetlands.Results showed that the bare mudflats exhibited high pH value and soil moisture content compared with the vegetated samples.In different vegetation types,the organic matter content,total nitrogen,and total potassium content decreased in the order:S.alterniflora wetland>P.australis wetland>S.australis wetland,and there was no obvious difference in total phosphorous content.The halophytes could decrease soil salinity compared with bare mudflats.Proteobacteria,Nitrospinae,Bacteroidetes,Acidobacteria,and Nitrospirae were the predominant level across all samples.Functional prediction showed that SPA-covered soil might play vital roles in sulphur cycling,while SUA and PHR covered soils were involved in nitrogen cycling.This study could provide the first insight into the microbial community of this study area and contribute to a better understanding of vegetation microbiota and bioremediation in coastal wetland ecosystem.
基金the National Natural Science Foundation of China(No.31670494).
文摘The eff ect of seasons on the soil microbiome in a Larix gmelinii forest of Mohe,China,where winter temperatures are generally below−40°C,was evaluated with metagenomics analysis.Taxonomic profi ling using sequencing information revealed that Proteobacteria,Actinobacteria,Acidobacteria and Verrucomicrobia were the dominant phyla in spring,summer,and fall,as were Bradyrhizobium,Chthoniobacter,Streptomyces,Acid Candidatus Koribacter at the genus level.Some species that were abundant in spring and fall greatly diminished in abundance in summer.Clusters of orthologous groups(COG)of proteins,carbohydrate-active enzymes(CAZy),Kyoto Encyclopedia of Genes and Genomes(KEGG)and NCBI databases were used to elucidate the function of diverse proteins and metabolites of the microbial community of L.gmelinii forest.COG analysis showed that fewer genes were detected in spring than in fall and summer,indicating that many soil microbes in the L.gmelinii forest were not tolerant to cold.Based on KEGG analysis,some pathways in the soil microbes were activated in spring and autumn and deactivated in summer.CAZy analysis revealed that most CAZy were more active in summer than in spring or autumn and were severely inhibited in the spring.Many functional pathways,proteins,and CAZy involved in the community changes were concerned with cold or heat resistance.Therefore,the soil in the L.gmelinii forest can be a valuable resource for further research on heat and cold tolerance of soil microbes.
基金supported by Key laboratory of Degraded and Unused Land Consolidation Engineering,the Ministry of Land and Resources(SXDJ2018-06)National Natural Science Foundation of China(Nos.41501271 and 41601339)+1 种基金China Agriculture Research System(No.CARS-10-B10)Support Plan on Youth Innovation Science and Technology for Higher Education of Shandong Province(2019KJD014).
文摘Soil fungi are extremely important for maintaining soil health and plant production in agricultural systems.Currently,the effect of continuous cropping of sweet potato on soil fungal communities and physiochemical parameters has not been well documented.In the present study,four sweet potato fields consecutively monocultured for 1,2,3,and 4 years were selected to investigate the effect of monoculture on soil fungal communities through Illumina MiSeq sequencing.Continuous cropping of sweet potatoes dramatically altered the fungal community composition,whereas fungal diversity was almost unchanged.Ascomycota and Basidiomycota were the most abundant phyla in all soil samples,accounting for 32.59%and 21.14%of the average relative abundance,respectively.The abundance of some potential pathogens,such as Ascobolus spp,specifically Ascobolus stercorarius,and some unknown fungi increased significantly as the sweet potato monoculture period increased,and their presence were highly positively correlated with disease incidence.In contrast,Basidiomycota,Bullera,Fusarium and Trichocladium most likely play roles as antagonists of sweet potato disease development,as their relative abundance decreased significantly over time and were negatively correlated with disease incidence.Redundancy and correlation analyses revealed that soil pH and organic carbon content were the most important factors driving these changes.Our findings provided a dynamic overview of the fungal community and presented a clear scope for screening beneficial fungi and pathogens of sweet potato.
基金financially supported by Natural Science Foundation of Zhejiang Province(LY20C160003)the National College Students’Innovation and Entrepreneurship Training Program(202110341063).
文摘Chinese hickory(Carya cathayensis Sarg.)is an important economic forest in Southeastern China.A large amount of hickory husk waste is generated every year but with a low proportion of returning.Meanwhile,intensive management has resulted in soil degradation of Chinese hickory plantations.This study aims to investigate the effects of three Chinese hickory husk returning modes on soil amendment,including soil acidity,soil nutrition,and microbial community.The field experiment carried out four treatments:control(CK),hickory husk mulching(HM),hickory husk biochar(BC),and hickory husk organic fertilizer(OF).The phospholipid fatty acid(PLFA)biomarker method was employed to determine the soil microbial community.After one year of treatment,the results showed that:(i)HM and BC significantly increased soil pH by 0.33 and 1.71 units,respectively;(ii)HM,BC and OF treatments significantly increased the soil organic carbon,alkaline nitrogen,available phosphorous,and available potassium.The OF treatment demonstrated the most significant improvement in the soil nutrient;(iii)The soil microbial biomass significantly increased in the HM,BC and OF treatments,and all microbial groups showed an increasing trend.HM treatment increased the fungal/bacterial ratio(F/B).The OF treatment significantly decreased the Shannon-Wiener diversity(H’)and evenness index(J)of the microbial community(P<0.05).Considering the treatments effects,costs,and ease of operation,our recommended returning modes of Chinese hickory husk are mulching and organic fertilizer produced by composting with manure.
基金Supported by National Natural Science Foundation of China (42177446,41601584)Guizhou Provincial Science and Technology Fund (Qiankehe[2017]1417)Guizhou Normal University (Qianshixinmiao[2022]28).
文摘In this paper,managed forest(MF)and natural forest(NF)in the Huajiang Demonstration Zone of Guanling,Guizhou were selected as research objects,and cropland(CL)was taken as control.High-throughput sequencing technology was used to study the characteristics of fungal community composition and species diversity in the surface(0-10 cm)soil of each restoration measure,in order to reveal the dominant soil fungal groups and fungal community composition in karst rocky desertification areas,which was conducive to a more comprehensive understanding of the soil conditions of different vegetation restoration measures.Research has shown that vegetation restoration significantly affected the diversity of soil fungal community,with significant increases in Sob index,Ace index,and Chao index.The vegetation restoration has significantly changed the composition of fungal community.The dominant fungi in the CL topsoil are Sordariomycetes(62.28%),Dothideomycetes(12.34%),and Eurotiomycetes(9.12%);the dominant fungi in the MF soil are Sordariomycetes(45.05%),Dothideomycetes(14.74%),and Mortierellomycetes(10.40%);the dominant fungi in the NF soil are unclassified fungal community(26.38%),Sordariomycetes(19.78%),and Agaricomycetes(13.82%).Vegetation restoration has changed the key fungal groups in the soil.Sordariomycetes,Fusarium,and Setophoma are the key dominant fungal groups in CL soil;Dioszegia is key dominant fungal group in MF soil;c_unclassified_k_Fungi,p_unclassified_k_Fungi,o_unclassified_k_Fungi,f_unclassified_k_Fungi,g_unclassified_k_Fungi,Teichospora,and Diaporthe are key dominant fungal groups in NF soil.
基金funded by Open Science Research Fund of Key Laboratory of Ocean Space Resource Management Technology,Marine Academy of Zhejiang Province,China(KF-2024-112)Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment(no grant number)Research Project on the Application of Invasive Plants in Soil Ecological Restoration in Jiangsu(20240110).
文摘The leaves of multiple invasive plants can coexist and intermingle within the same environment.As species number of invasive plants increases,variations may occur in decomposition processes of invasive plants,soil nutrient contents,soil enzyme activities,and soilmicrobial community structure.Existing progress have predominantly focused on the ecological effects of one species of invasive plant compared to native species,with limited attention paid to the ecological effects of multiple invasive plants compared to one species of invasive plant.This study aimed to determine the differences in the effects of mono-and co-decomposition of four Asteraceae invasive plants,horseweed(Erigeron canadensis(L.)Cronq.),Guernsey fleabane(E.sumatrensis Retz.),daisy fleabane(E.annuus(L.)Pers.),and Canada goldenrod(Solidago canadensis L.),on litter decomposition responses,soil carbon contents,soil enzyme activities,and soil bacterial community structure.Species number of invasive plants did not significantly affect on the decomposition rate of mixed leaves or mixed-effect intensity of co-decomposition.Soil pH and electrical conductivity enhanced as species number of invasive plants increased.Soil carbon contents(including soluble organic carbon content and microbial carbon content),soil enzyme(including polyphenol oxidase,FDA hydrolase,and sucrase)activities,soil bacterial alpha diversity(including the OTU species,Chao1 richness,ACE richness,and Phylogenetic diversity indexes),and the number of pathways of most functional genes of soil bacterial communities closely related to decomposition processes declined as species number of invasive plants increased.Hence,soil pH and electrical conductivity significantly increased with increasing species number of invasive plants,but soil carbon contents,soil enzyme activities,soil bacterial alpha diversity,and the number of pathways of most functional genes of soil bacterial communities closely related to decomposition processes significantly reduced with growing species number of invasive plants.
