Blood cell aggregation and adhesion to endothelial cells under shear flow are crucial to many biological processes such as thrombi formation, inflammatory cascade, and tumor metastasis, in which these cellular interac...Blood cell aggregation and adhesion to endothelial cells under shear flow are crucial to many biological processes such as thrombi formation, inflammatory cascade, and tumor metastasis, in which these cellular interactions are mainly mediated by the underlying receptor-ligand bindings. While theoretical modeling of aggregation dynamics and adhesion kinetics of interacting cells have been well studied separately, how to couple these two processes remains unclear. Here we develop a combined model that couples cellular aggregation dynamics and adhesion kinetics under shear flow. The impacts of shear rate （or shear stress） and molecular binding affinity were elucidated. This study provides a unified model where the action of a fluid flow drives cell aggregation and adhesion under the modulations of the mechanical shear flow and receptor-ligand interaction kinetics. It offers an insight into understanding the relevant biological processes and functions.展开更多
1 Introduction Nanoparticles are widely found in the ductile shear zone and it is considered to have a close relation with faulting.The sizes of these nanoparticles are generallyless than 100 nm.They have a variety of...1 Introduction Nanoparticles are widely found in the ductile shear zone and it is considered to have a close relation with faulting.The sizes of these nanoparticles are generallyless than 100 nm.They have a variety of morphologies like globular structure rod-like and tubular,by the order aggregating of these nanoparticles various aggregations展开更多
Simultaneous orthokinetic and perikinetic coagulations（SOPCs） are studied for small and large Peclet numbers（P e） using Brownian dynamics simulation.The results demonstrate that the contributions of the Brownian m...Simultaneous orthokinetic and perikinetic coagulations（SOPCs） are studied for small and large Peclet numbers（P e） using Brownian dynamics simulation.The results demonstrate that the contributions of the Brownian motion and the shear flow to the overall coagulation rate are basically not additive.At the early stages of coagulation with small Peclet numbers,the ratio of overall coagulation rate to the rate of pure perikinetic coagulation is proportional to P 1/2 e,while with high Peclet numbers,the ratio of overall coagulation rate to the rate of pure orthokinetic coagulation is proportional to P 1/2 e.Moreover,our results show that the aggregation rate generally changes with time for the SOPC,which is different from that for pure perikinetic and pure orthokinetic coagulations.By comparing the SOPC with pure perikinetic and pure orthokinetic coagulations,we show that the redistribution of particles due to Brownian motion can play a very important role in the SOPC.In addition,the effects of redistribution in the directions perpendicular and parallel to the shear flow direction are different.This perspective explains the behavior of coagulation due to the joint effects of the Brownian motion（perikinetic） and the fluid motion（orthokinetic）.展开更多
A nonequilibrium molecular dynamics（NEMD） method is employed to study the dynamics of two identical vesicles with attractive interactions immersed in shear flow. The dynamics behaviors of attractive vesicles depend ...A nonequilibrium molecular dynamics（NEMD） method is employed to study the dynamics of two identical vesicles with attractive interactions immersed in shear flow. The dynamics behaviors of attractive vesicles depend on the attractive interactions and the shear rates simultaneously. There are four motion types for attractive vesicles in shear flow： a coupled-tumbling（CTB） motion, a coupled-trembling（CTR） motion, a collision/rotation mixture（CRM） motion and a separated-tank-treading（STT） motion, which are determined by the competition between the shear flow and the attractive interactions. Furthermore, the dynamics behavior of an individual vesicle shows three main motion types such as tumbling, trembling and tank-treading motions, and relies mainly on the shear rates. Meanwhile, comparisons with rigid vesicles for the dynamics behaviors are made, and the collision/rotation mixture（M） motion isn＇t observed for rigid vesicles.展开更多
基金supported by National Natural Science Foundation of China (grants 31230027, 31110103918 and 11172207)National Key Basic Research Foundation of China (grant 2011CB710904)Strategic Priority Research Program (grants XDA01030102 and XDA04020219)
文摘Blood cell aggregation and adhesion to endothelial cells under shear flow are crucial to many biological processes such as thrombi formation, inflammatory cascade, and tumor metastasis, in which these cellular interactions are mainly mediated by the underlying receptor-ligand bindings. While theoretical modeling of aggregation dynamics and adhesion kinetics of interacting cells have been well studied separately, how to couple these two processes remains unclear. Here we develop a combined model that couples cellular aggregation dynamics and adhesion kinetics under shear flow. The impacts of shear rate （or shear stress） and molecular binding affinity were elucidated. This study provides a unified model where the action of a fluid flow drives cell aggregation and adhesion under the modulations of the mechanical shear flow and receptor-ligand interaction kinetics. It offers an insight into understanding the relevant biological processes and functions.
基金supported by Natural Science Foundation of China(Project No.41206035,41602231)The National Nature Science Foundation of Guangdong Province(Project No.2015A030313157)
文摘1 Introduction Nanoparticles are widely found in the ductile shear zone and it is considered to have a close relation with faulting.The sizes of these nanoparticles are generallyless than 100 nm.They have a variety of morphologies like globular structure rod-like and tubular,by the order aggregating of these nanoparticles various aggregations
基金Project supported by the National Natural Science Foundation of China (Grant Nos. 10972217,10932012 and 11032011)the Knowledge Innovation Program of the Chinese Academy of Sciences (Grant No. KJCX2-YW-L08)
文摘Simultaneous orthokinetic and perikinetic coagulations（SOPCs） are studied for small and large Peclet numbers（P e） using Brownian dynamics simulation.The results demonstrate that the contributions of the Brownian motion and the shear flow to the overall coagulation rate are basically not additive.At the early stages of coagulation with small Peclet numbers,the ratio of overall coagulation rate to the rate of pure perikinetic coagulation is proportional to P 1/2 e,while with high Peclet numbers,the ratio of overall coagulation rate to the rate of pure orthokinetic coagulation is proportional to P 1/2 e.Moreover,our results show that the aggregation rate generally changes with time for the SOPC,which is different from that for pure perikinetic and pure orthokinetic coagulations.By comparing the SOPC with pure perikinetic and pure orthokinetic coagulations,we show that the redistribution of particles due to Brownian motion can play a very important role in the SOPC.In addition,the effects of redistribution in the directions perpendicular and parallel to the shear flow direction are different.This perspective explains the behavior of coagulation due to the joint effects of the Brownian motion（perikinetic） and the fluid motion（orthokinetic）.
基金supported by the National Natural Science Foundation of China(Nos.21374102 and 21174131)
文摘A nonequilibrium molecular dynamics（NEMD） method is employed to study the dynamics of two identical vesicles with attractive interactions immersed in shear flow. The dynamics behaviors of attractive vesicles depend on the attractive interactions and the shear rates simultaneously. There are four motion types for attractive vesicles in shear flow： a coupled-tumbling（CTB） motion, a coupled-trembling（CTR） motion, a collision/rotation mixture（CRM） motion and a separated-tank-treading（STT） motion, which are determined by the competition between the shear flow and the attractive interactions. Furthermore, the dynamics behavior of an individual vesicle shows three main motion types such as tumbling, trembling and tank-treading motions, and relies mainly on the shear rates. Meanwhile, comparisons with rigid vesicles for the dynamics behaviors are made, and the collision/rotation mixture（M） motion isn＇t observed for rigid vesicles.
