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WGCNA联合拟时序分析筛选十二指肠乳头腺瘤关键驱动和复发预测基因SLC12A2
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作者 蒋成飞 王频 +3 位作者 蔡培 韦晶晶 王雷 邹晓平 《胃肠病学》 2025年第2期73-81,共9页
背景:十二指肠乳头腺瘤是一种良性肿瘤,发病率较低但癌变风险较高。尽管内镜下乳头切除术创伤小、并发症少,但存在一定的复发风险。探索该病的驱动基因,预测其复发和癌变风险,有助于实现精准治疗。目的:基于转录组数据,整合多维度生物... 背景:十二指肠乳头腺瘤是一种良性肿瘤,发病率较低但癌变风险较高。尽管内镜下乳头切除术创伤小、并发症少,但存在一定的复发风险。探索该病的驱动基因,预测其复发和癌变风险,有助于实现精准治疗。目的:基于转录组数据,整合多维度生物信息学方法筛选驱动十二指肠乳头腺瘤发生、发展和预测复发的关键基因并进行临床验证。方法:从GEO数据库获取十二指肠乳头腺瘤和腺癌表达谱数据(GSE189035、GSE94919、GSE111156、GSE102208),筛选腺瘤与正常组织的差异表达基因(DEGs),结合加权基因共表达网络分析(WGCNA)与拟时序分析识别在正常组织‑腺瘤‑腺癌演进过程中呈“先升后降”表达趋势的关键基因。通过基因功能注释、免疫微环境分析、蛋白质相互作用网络分析探究筛选出的关键基因的作用机制,并通过临床样本免疫组化染色验证基因表达特征及其与复发的关系。结果:共筛选出469个DEGs。WGCNA显示蓝色模块(1051个基因)与腺瘤发生和进展相关(正常、腺瘤和腺癌组织Cor分别为-0.29、0.15和0.11),与DEGs取交集得到SLC12A2、BEST4、SLC37A2、SOAT2四个关键基因,拟时序分析显示仅SLC12A2基因在腺瘤和腺癌组织中呈持续高表达。KEGG富集分析提示SLC12A2与多种恶性肿瘤相关信号通路如PD‑1/PD‑L1存在关联,且其高表达与免疫细胞(γδT细胞、CD8^(+)T细胞等)浸润减少相关。临床样本免疫组化分析证实SLC12A2在正常、腺瘤、腺癌组织中的表达呈现先升高后降低趋势,腺瘤复发患者表达水平更高(P=0.004),SLC12A2高表达组复发风险增加(P=0.034)。结论:SLC12A2是驱动十二指肠乳头腺瘤发生、发展的关键基因,有望成为预测肿瘤复发的生物学标志物。 展开更多
关键词 十二指肠乳头腺瘤 slc12a2 加权基因共表达网络分析 拟时序分析 生物学标记
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Differential expression of pancreatic protein and chemosensing receptor m RNAs in NKCC1-null intestine 被引量:1
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作者 Emily M Bradford Kanimozhi Vairamani Gary E Shull 《World Journal of Gastrointestinal Pathophysiology》 CAS 2016年第1期138-149,共12页
AIM: To investigate the intestinal functions of the NKCC1 Na^+-K^+-2Cl cotransporter(SLC12a2 gene), differential m RNA expression changes in NKCC1-null intestine were analyzed.METHODS: Microarray analysis of m RNA fro... AIM: To investigate the intestinal functions of the NKCC1 Na^+-K^+-2Cl cotransporter(SLC12a2 gene), differential m RNA expression changes in NKCC1-null intestine were analyzed.METHODS: Microarray analysis of m RNA from intestines of adult wild-type mice and gene-targeted NKCC1-null mice(n = 6 of each genotype) was performed to identify patterns of differential gene expression changes. Differential expression patterns were further examined by Gene Ontology analysis using the online Gorilla program, and expression changes of selected genes were verified using northern blot analysis and quantitative real time-polymerase chain reaction. Histological staining and immunofluorescence were performed to identify cell types in which upregulated pancreatic digestive enzymes were expressed.RESULTS: Genes typically associated with pancreatic function were upregulated. These included lipase, amylase, elastase, and serine proteases indicative of pancreatic exocrine function, as well as insulin and regenerating islet genes, representative of endocrine function. Northern blot analysis and immunohistochemistry showed that differential expression of exocrine pancreas m RNAs was specific to the duodenum and localized to a subset of goblet cells. In addition, a major pattern of changes involving differential expression of olfactory receptors that function in chemical sensing, as well as other chemosensing G-protein coupled receptors, was observed. These changes in chemosensory receptor expression may be related to the failure of intestinal function and dependency on parenteral nutrition observed in humans with SLC12a2 mutations. CONCLUSION: The results suggest that loss of NKCC1 affects not only secretion, but also goblet cell function and chemosensing of intestinal contents via G-protein coupled chemosensory receptors. 展开更多
关键词 slc12a2 CHEMOSENSORY CHEMOSENSITIVITY Gastrointestinal DYSPEPSIA
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