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Mass scale screening of common arboviral infections by an affordable,cost effective RT-PCR method 被引量:1
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作者 Debjani Taraphdar Arindam Sarkar Shyamalendu Chatterjee 《Asian Pacific Journal of Tropical Biomedicine》 SCIE CAS 2012年第2期97-101,共5页
Objective:To develop a rapid,cost effective RT-PCR method for the mass scale diagnosis of such diseases at the vireraia stage to find out the actual disease burden in that area.Methods:For this purpose,cases with the ... Objective:To develop a rapid,cost effective RT-PCR method for the mass scale diagnosis of such diseases at the vireraia stage to find out the actual disease burden in that area.Methods:For this purpose,cases with the history of only short febrile illness were considered.Thus 157 samples with the history of dengue/chikungunya like illness and only 58 samples with a history of acute encephalitis syndrome(AES)were selected.Results:Out of 157 samples,42 and 74 were detected as dengue and chikungunya,respectively and out of 58 AES cases only 23 could be detected as Japanese encephalitis by this RT-PCR method.Conclusions:This cost effective RT-PCR method can detect the total positive cases that remain undetected by EL1SA method.Moreover,this method is capable to detect the viral RNA from patients'sera even after the appearance of IgM antibody at one fifth costs as compared with the other commercially available kits. 展开更多
关键词 COST effective rt-pcr method MASS SCREENING ARBOVIRUS
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Development of a real-time RT-PCR method for the detection of newly emerged highly pathogenic H7N9 influenza viruses 被引量:8
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作者 WANG Xiu-rong GU Lin-lin +6 位作者 SHI Jian-zhong XU Hai-feng ZHANG Ying ZENG Xian-ying DENG Guo-hua LI Cheng-jun CHEN Hua-lan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2017年第9期2055-2061,共7页
In 2013, a human influenza outbreak caused by a novel H7N9 virus occurred in China. Recently, the H7N9 virus acquired multiple basic amino acids at its hemagglutinin(HA) cleavage site, leading to the emergence of a ... In 2013, a human influenza outbreak caused by a novel H7N9 virus occurred in China. Recently, the H7N9 virus acquired multiple basic amino acids at its hemagglutinin(HA) cleavage site, leading to the emergence of a highly pathogenic virus. The development of an effective diagnostic method is imperative for the prevention and control of highly pathogenic H7N9 influenza. Here, we designed and synthesized three pairs of primers based on the nucleotide sequence at the HA cleavage site of the newly emerged highly pathogenic H7N9 influenza virus. One of the primer pairs and the corresponding probe displayed a high level of amplification efficiency on which a real-time RT-PCR method was established. Amplification using this method resulted in a fluorescent signal for only the highly pathogenic H7N9 virus, and not for any of the H1–H15 subtype reference strains, thus demonstrating high specificity. The method detected as low as 39.1 copies of HA-positive plasmid and exhibited similar sensitivity to the virus isolation method using embryonated chicken eggs. Importantly, the real-time RT-PCR method exhibited 100% consistency with the virus isolation method in the diagnosis of field samples. Collectively, our data demonstrate that this real-time RT-PCR assay is a rapid, sensitive and specific method, and the application will greatly aid the surveillance, prevention, and control of highly pathogenic H7N9 influenza viruses. 展开更多
关键词 H7N9 highly pathogenic influenza virus real-time rt-pcr
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Nested RT-PCR method for the detection of European avian-like H1 swine influenza A virus 被引量:1
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作者 WEI Yan-di PEI Xing-yao +4 位作者 ZHANG Yuan YU Chen-fang SUN Hong-lei LIU Jin-hua PU Juan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2016年第5期1095-1102,共8页
Swine influenza A virus(swine IAV) circulates worldwide in pigs and poses a serious public health threat, as evidenced by the 2009 H1N1 influenza pandemic. Among multiple subtypes/lineages of swine influenza A virus... Swine influenza A virus(swine IAV) circulates worldwide in pigs and poses a serious public health threat, as evidenced by the 2009 H1N1 influenza pandemic. Among multiple subtypes/lineages of swine influenza A viruses, European avian-like(EA) H1N1 swine IAV has been dominant since 2005 in China and caused infections in humans in 2010. Highly sensitive and specific methods of detection are required to differentiate EA H1N1 swine IAVs from viruses belonging to other lineages and subtypes. In this study, a nested reverse transcription(RT)-PCR assay was developed to detect EA H1 swine IAVs. Two primer sets(outer and inner) were designed specifically to target the viral hemagglutinin genes. Specific PCR products were obtained from all tested EA H1N1 swine IAV isolates, but not from other lineages of H1 swine IAVs, other subtypes of swine IAVs, or other infectious swine viruses. The sensitivity of the nested RT-PCR was improved to 1 plaque forming unit(PFU) m L^(-1) which was over 10~4 PFU m L^(-1) for a previously established multiplex RT-PCR method. The nested RT-PCR results obtained from screening 365 clinical samples were consistent with those obtained using conventional virus isolation methods combined with sequencing. Thus, the nested RT-PCR assay reported herein is more sensitive and suitable for the diagnosis of clinical infections and surveillance of EA H1 swine IAVs in pigs and humans. 展开更多
关键词 nested rt-pcr swine influenza A virus European avian-like H1 HA gene molecular diagnosis
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THE DETECTION OF MDR1 GENE EXPRESSION USING FLUOROGENIC PROBE QUANTITATIVE RT-PCR METHOD
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作者 高劲松 马刚 +3 位作者 仝明 陈佩毅 王传华 何蕴韶 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2001年第2期96-100,共5页
Objective: To establish a fluoregenic probe quantitative RT-PCR (FQ-RT-PCR) method for detection of the expression of MDR1 gene in tumor cells and to investigate the expression of MDR1 gene in patients with lung cance... Objective: To establish a fluoregenic probe quantitative RT-PCR (FQ-RT-PCR) method for detection of the expression of MDR1 gene in tumor cells and to investigate the expression of MDR1 gene in patients with lung cancer. Methods: The fluorogenic quantitative RT-PCR method for detection of the expression of MDR1 gene was established. K562/ADM and K562 cell lines or 45 tumor tissues from patients with lung cancer were examined on PE Applied Biosystems 7700 Sequence Detection machine. Results: the average levels of MDR1 gene expression in K562/ADM cells and K562 cells were (6.86±0.65)× 107 copies/μg RNA and (8.49±0.67)×105 copies/μg RNA, respectively. The former was 80.8 times greater than the latter. Each sample was measured 10 times and the coefficient variation (CV) was 9.5% and 7.9%, respectively. Various levels of MDR1 gene expression were detected in 12 of 45 patients with lung cancer. Conclusion: Quantitative detection of MDR1 gene expression in tumor cells was achieved by using FQ-RT-PCR. FQ-RT-PCR is an accurate, and sensitive method and easy to perform. Using this method, low levels of MDR1 gene expression could be detected in 24% of the patients with lung cancer. 展开更多
关键词 Fluorogenic quantitative rt-pcr/MDR1 Expression/Real time DETECTION
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Development and Application of an RT-PCR Method for Differentiation of PEDV Variant Strains and Classical Strains
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作者 Qin Yibin Lu Bingxia +8 位作者 Zhao Wu He Ying Li Yingying Li Bin Liang Jiaxing Liang Baozhong Su Qianlian Jiang Dongfu Zhou Yingning 《Animal Husbandry and Feed Science》 CAS 2015年第1期21-24,60,共5页
In order to establish a rapid RT-PCR assay for detection of porcine epidemic diarrhea virus(PEDV),a pair of special primers was designed based on S gene sequence of PEDV published in Gen Bank.After optimization of t... In order to establish a rapid RT-PCR assay for detection of porcine epidemic diarrhea virus(PEDV),a pair of special primers was designed based on S gene sequence of PEDV published in Gen Bank.After optimization of the reaction system,a rapid RT-PCR method was established.Results showed that a fragment of 826 bp was successfully amplified only from the variant PEDV by RT-PCR,while the expected target fragment could not be amplified from TGEV,porcine rotavirus,porcine kobuvirus,PRRSV,PRV,CSFV,PPV.Sensitivity test of RT-PCR indicated that only 11.3 pg nuclear acids could be detected accurately and rapidly.A total of 123 samples collected from different farms in Guangxi Province were detected by the established RT-PCR,the positive rate of PEDV was 67.5%,and the positive rate of new PEDV was 86.7%(72/83).Therefore,the RT-PCR could be used as an effective tool for differentiating diagnosis of the highly pathogenic PEDV in epidemiological investigations. 展开更多
关键词 PEDV rt-pcr Differential diagnosis
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A New Inversion-free Iterative Method for Solving the Nonlinear Matrix Equation and Its Application in Optimal Control
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作者 GAO Xiangyu XIE Weiwei ZHANG Lina 《应用数学》 北大核心 2026年第1期143-150,共8页
In this paper,we consider the maximal positive definite solution of the nonlinear matrix equation.By using the idea of Algorithm 2.1 in ZHANG(2013),a new inversion-free method with a stepsize parameter is proposed to ... In this paper,we consider the maximal positive definite solution of the nonlinear matrix equation.By using the idea of Algorithm 2.1 in ZHANG(2013),a new inversion-free method with a stepsize parameter is proposed to obtain the maximal positive definite solution of nonlinear matrix equation X+A^(*)X|^(-α)A=Q with the case 0<α≤1.Based on this method,a new iterative algorithm is developed,and its convergence proof is given.Finally,two numerical examples are provided to show the effectiveness of the proposed method. 展开更多
关键词 Nonlinear matrix equation Maximal positive definite solution Inversion-free iterative method Optimal control
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Crushing evolution in pebble bed based on a novel method:a crushable DEM study
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作者 Jian Wang Ming‑Zhun Lei +4 位作者 Ming‑Zong Liu Qi‑Gang Wu Zi‑Cong Cai Kai‑Song Wang Hai‑Shun Deng 《Nuclear Science and Techniques》 2026年第1期212-224,共13页
In this paper,a novel method for investigating the particle-crushing behavior of breeding particles in a fusion blanket is proposed.The fractal theory and Weibull distribution are combined to establish a theoretical m... In this paper,a novel method for investigating the particle-crushing behavior of breeding particles in a fusion blanket is proposed.The fractal theory and Weibull distribution are combined to establish a theoretical model,and its validity was verified using a simple impact test.A crushable discrete element method(DEM)framework is built based on the previously established theoretical model.The tensile strength,which considers the fractal theory,size effect,and Weibull variation,was assigned to each generated particle.The assigned strength is then used for crush detection by comparing it with its maximum tensile stress.Mass conservation is ensured by inserting a series of sub-particles whose total mass was equal to the quality loss.Based on the crushable DEM framework,a numerical simulation of the crushing behavior of a pebble bed with hollow cylindrical geometry under a uniaxial compression test was performed.The results of this investigation showed that the particle withstands the external load by contact and sliding at the beginning of the compression process,and the results confirmed that crushing can be considered an important method of resisting the increasing external load.A relatively regular particle arrangement aids in resisting the load and reduces the occurrence of particle crushing.However,a limit exists to the promotion of resistance.When the strain increases beyond this limit,the distribution of the crushing position tends to be isotropic over the entire pebble bed.The theoretical model and crushable DEM framework provide a new method for exploring the pebble bed in a fusion reactor,considering particle crushing. 展开更多
关键词 Crushing behavior Granular material Discrete element method Pebble bed Fractal theory
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A Deep Reinforcement Learning-Based Partitioning Method for Power System Parallel Restoration
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作者 Changcheng Li Weimeng Chang +1 位作者 Dahai Zhang Jinghan He 《Energy Engineering》 2026年第1期243-264,共22页
Effective partitioning is crucial for enabling parallel restoration of power systems after blackouts.This paper proposes a novel partitioning method based on deep reinforcement learning.First,the partitioning decision... Effective partitioning is crucial for enabling parallel restoration of power systems after blackouts.This paper proposes a novel partitioning method based on deep reinforcement learning.First,the partitioning decision process is formulated as a Markov decision process(MDP)model to maximize the modularity.Corresponding key partitioning constraints on parallel restoration are considered.Second,based on the partitioning objective and constraints,the reward function of the partitioning MDP model is set by adopting a relative deviation normalization scheme to reduce mutual interference between the reward and penalty in the reward function.The soft bonus scaling mechanism is introduced to mitigate overestimation caused by abrupt jumps in the reward.Then,the deep Q network method is applied to solve the partitioning MDP model and generate partitioning schemes.Two experience replay buffers are employed to speed up the training process of the method.Finally,case studies on the IEEE 39-bus test system demonstrate that the proposed method can generate a high-modularity partitioning result that meets all key partitioning constraints,thereby improving the parallelism and reliability of the restoration process.Moreover,simulation results demonstrate that an appropriate discount factor is crucial for ensuring both the convergence speed and the stability of the partitioning training. 展开更多
关键词 Partitioning method parallel restoration deep reinforcement learning experience replay buffer partitioning modularity
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An improved open-top dynamic chambers method for measuring the exchange fluxes of N_(2)O,NO and NH_(3) from farmland
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作者 Minhang Tan Yining Hu +6 位作者 Yifei Song Zixuan Huang Yujing Mu Junfeng Liu Chenglong Zhang Pengfei Liu Yuanyuan Zhang 《Journal of Environmental Sciences》 2026年第1期535-545,共11页
The application of nitrogen fertilizers in agricultural fields can lead to the release of nitrogen-containing gases(NCGs),such as NO_(x),NH_(3) and N_(2)O,which can significantly impact regional atmospheric environmen... The application of nitrogen fertilizers in agricultural fields can lead to the release of nitrogen-containing gases(NCGs),such as NO_(x),NH_(3) and N_(2)O,which can significantly impact regional atmospheric environment and con-tribute to global climate change.However,there remain considerable research gaps in the accurate measurement of NCGs emissions from agricultural fields,hindering the development of effective emission reduction strategies.We improved an open-top dynamic chambers(OTDCs)system and evaluated the performance by comparing the measured and given fluxes of the NCGs.The results showed that the measured fluxes of NO,N_(2)O and NH_(3)were 1%,2%and 7%lower than the given fluxes,respectively.For the determination of NH_(3) concentration,we employed a stripping coil-ion chromatograph(SC-IC)analytical technique,which demonstrated an absorption efficiency for atmospheric NH_(3) exceeding 96.1%across sampling durations of 6 to 60 min.In the summer maize season,we utilized the OTDCs system to measure the exchange fluxes of NO,NH_(3),and N_(2)O from the soil in the North China Plain.Substantial emissions of NO,NH_(3) and N_(2)O were recorded following fertilization,with peaks of 107,309,1239 ng N/(m^(2)·s),respectively.Notably,significant NCGs emissions were observed following sus-tained heavy rainfall one month after fertilization,particularly with NH_(3) peak being 4.5 times higher than that observed immediately after fertilization.Our results demonstrate that the OTDCs system accurately reflects the emission characteristics of soil NCGs and meets the requirements for long-term and continuous flux observation. 展开更多
关键词 Open-top dynamic chambers Nitrogen-containing gases Soil emissions North China Plain method evaluation
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Numerical Simulation of the Welding Deformation of Marine Thin Plates Based on a Temperature Gradient-thermal Strain Method
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作者 Lin Wang Yugang Miao +3 位作者 Zhenjian Zhuo Chunxiang Lin Benshun Zhang Duanfeng Han 《哈尔滨工程大学学报(英文版)》 2026年第1期122-135,共14页
Marine thin plates are susceptible to welding deformation owing to their low structural stiffness.Therefore,the efficient and accurate prediction of welding deformation is essential for improving welding quality.The t... Marine thin plates are susceptible to welding deformation owing to their low structural stiffness.Therefore,the efficient and accurate prediction of welding deformation is essential for improving welding quality.The traditional thermal elastic-plastic finite element method(TEP-FEM)can accurately predict welding deformation.However,its efficiency is low because of the complex nonlinear transient computation,making it difficult to meet the needs of rapid engineering evaluation.To address this challenge,this study proposes an efficient prediction method for welding deformation in marine thin plate butt welds.This method is based on the coupled temperature gradient-thermal strain method(TG-TSM)that integrates inherent strain theory with a shell element finite element model.The proposed method first extracts the distribution pattern and characteristic value of welding-induced inherent strain through TEP-FEM analysis.This strain is then converted into the equivalent thermal load applied to the shell element model for rapid computation.The proposed method-particularly,the gradual temperature gradient-thermal strain method(GTG-TSM)-achieved improved computational efficiency and consistent precision.Furthermore,the proposed method required much less computation time than the traditional TEP-FEM.Thus,this study lays the foundation for future prediction of welding deformation in more complex marine thin plates. 展开更多
关键词 Marine thin plate Welding deformation Numerical simulation Temperature gradient-thermal strain method Shell element
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Precision and trueness of a method for determing antimony content in groundwater using hydride generation-atomic fluorescence spectrometry
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作者 Bing-bing Liu Lin Zhang Ke Li 《Journal of Groundwater Science and Engineering》 2026年第1期49-58,共10页
At present,there is currently a lack of unified standard methods for the determination of antimony content in groundwater in China.The precision and trueness of related detection technologies have not yet been systema... At present,there is currently a lack of unified standard methods for the determination of antimony content in groundwater in China.The precision and trueness of related detection technologies have not yet been systematically and quantitatively evaluated,which limits the effective implementation of environmental monitoring.In response to this key technical gap,this study aimed to establish a standardized method for determining antimony in groundwater using Hydride Generation–Atomic Fluorescence Spectrometry(HG-AFS).Ten laboratories participated in inter-laboratory collaborative tests,and the statistical analysis of the test data was carried out in strict accordance with the technical specifications of GB/T 6379.2—2004 and GB/T 6379.4—2006.The consistency and outliers of the data were tested by Mandel's h and k statistics,the Grubbs test and the Cochran test,and the outliers were removed to optimize the data,thereby significantly improving the reliability and accuracy.Based on the optimized data,parameters such as the repeatability limit(r),reproducibility limit(R),and method bias value(δ)were determined,and the trueness of the method was statistically evaluated.At the same time,precision-function relationships were established,and all results met the requirements.The results show that the lower the antimony content,the lower the repeatability limit(r)and reproducibility limit(R),indicating that the measurement error mainly originates from the detection limit of the method and instrument sensitivity.Therefore,improving the instrument sensitivity and reducing the detection limit are the keys to controlling the analytical error and improving precision.This study provides reliable data support and a solid technical foundation for the establishment and evaluation of standardized methods for the determination of antimony content in groundwater. 展开更多
关键词 Mandel's h and k statistics Grubbs test Cochran test Repeatability limit Reproducibility limit method bias value
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鹅星状病毒通用型TaqMan探针实时荧光定量RT-PCR检测方法的建立与应用 被引量:1
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作者 陈立功 穆英丽 +5 位作者 张诚 潘保革 范乐乐 魏忠华 王学静 刘聚祥 《中国家禽》 北大核心 2025年第2期53-59,共7页
为建立用于鹅星状病毒1(GAstV 1)和鹅星状病毒2(GAstV 2)感染快速检测的实时荧光定量RT-PCR方法,试验根据部分GAstV ORF2基因和部分3′非编码区序列设计合成特异性引物和探针,采用矩阵法获得引物和探针的最优浓度,在优化退火温度的基础... 为建立用于鹅星状病毒1(GAstV 1)和鹅星状病毒2(GAstV 2)感染快速检测的实时荧光定量RT-PCR方法,试验根据部分GAstV ORF2基因和部分3′非编码区序列设计合成特异性引物和探针,采用矩阵法获得引物和探针的最优浓度,在优化退火温度的基础上,分别建立扩增GAstV 1和GAstV 2的标准曲线,进一步验证该方法的特异性、敏感性和重复性,建立的方法用于临床样品的检测,并与文献报道的常规RT-PCR方法进行比较。结果显示:优化后的反应体系中最优上、下游引物浓度均为0.40(或0.50)μmol/L,探针浓度均为0.50μmol/L,扩增线性范围分别为3.26×10^(3)~3.26×10^(8)拷贝/μL和7.09×10^(3)~7.09×10^(8)拷贝/μL,相关系数均为0.998;该方法可特异性检出两种GAstV,但对新城疫病毒、H9亚型禽流感病毒、鸭坦布苏病毒、新型鸭呼肠孤病毒、鹅细小病毒和血清4型禽腺病毒6种鹅病相关病毒的核酸均无扩增信号;其检测限分别为3.26×10^(2)拷贝/μL和7.09×10^(1)拷贝/μL;组内变异系数和组间变异系数均低于3%。建立的实时荧光定量RT-PCR方法对临床样品的检测结果显示,GAstV阳性率为90.57%(96/106);而文献报道的常规RT-PCR方法对GAstV 1和GAstV 2的混合阳性率为62.26%。研究表明,建立的TaqMan荧光定量RT-PCR检测方法为同时检测GAstV 1和GAstV 2提供了快速、敏感、特异且能满足临床样本需求的检测方法。 展开更多
关键词 鹅星状病毒 荧光定量rt-pcr TAQMAN探针
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兔出血症病毒RHDV1和RHDV2一步法双重TaqMan探针荧光定量RT-PCR体系的建立和应用
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作者 陈萌萌 王冠萱 +8 位作者 仇汝龙 范志宇 胡波 宋艳华 魏后军 徐为中 葛雷 李一鸣 王芳 《江苏农业学报》 北大核心 2025年第5期937-942,共6页
兔出血症病毒(RHDV)引起的兔出血症是一种急性、高度致死性传染病,对养兔业造成严重危害。本研究基于RHDV衣壳蛋白(VP60)基因序列设计引物和TaqMan探针,建立可同时检测RHDV1和RHDV2两种毒株的双重TaqMan荧光定量RT-PCR检测体系。反应体... 兔出血症病毒(RHDV)引起的兔出血症是一种急性、高度致死性传染病,对养兔业造成严重危害。本研究基于RHDV衣壳蛋白(VP60)基因序列设计引物和TaqMan探针,建立可同时检测RHDV1和RHDV2两种毒株的双重TaqMan荧光定量RT-PCR检测体系。反应体系:2×One Step RT-PCR BufferⅢ10.0μL,上下游引物(10μmol/L)各0.6μL,ROX Reference DyeⅡ(50×)0.4μL,两种荧光探针(10μmol/L)各0.8μL,待测样本2.0μL,ddH_(2)O 4.8μL。反应程序:42℃5 min,95℃10 s,95℃5 s,60℃30 s,40个循环。试验结果表明,该体系特异性强,与轮状病毒、兔多杀性巴氏杆菌、兔支气管败血波氏菌、绿脓杆菌、沙门氏菌无交叉反应;灵敏度高,最低检测限为1μL 100拷贝。通过组内重复和组间重复进行重复性分析,Ct值变异系数为0.2%~2.9%,表明该体系稳定性较好。使用该体系对112份临床样本(60份肝脏组织、52份鼻肛拭子)进行检测,RHDV总检出率为69%,而常规RT-PCR体系的检出率仅为51%。本研究建立的双重荧光定量RT-PCR方法具有高灵敏度、强特异性和良好的重复性,可为RHDV的临床快速诊断及定量分析提供可靠技术支持。 展开更多
关键词 兔出血症病毒 荧光定量rt-pcr TAQMAN探针
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羊肠道病毒TaqMan实时荧光定量RT-PCR检测方法的建立及初步应用
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作者 马雪青 张雨星 +6 位作者 李平花 王松泰 魏达礼 赵志荀 朵红 卢曾军 孙普 《中国兽医科学》 北大核心 2025年第6期757-763,共7页
为建立一种灵敏、特异、准确的羊肠道病毒(CEV)实时荧光定量RT-PCR检测方法,本研究基于CEV基因序列的保守区设计特异性引物和探针,并制备标准品,通过优化反应体系和反应条件,建立了TaqMan实时荧光定量RT-PCR检测方法,同时对其敏感性、... 为建立一种灵敏、特异、准确的羊肠道病毒(CEV)实时荧光定量RT-PCR检测方法,本研究基于CEV基因序列的保守区设计特异性引物和探针,并制备标准品,通过优化反应体系和反应条件,建立了TaqMan实时荧光定量RT-PCR检测方法,同时对其敏感性、特异性和重复性进行评估,并与常规RT-PCR比较检测临床样品。结果显示,所建方法的标准曲线R2为0.995,拷贝数与Ct值有良好的线性关系;该方法特异性强,与口蹄疫病毒(FMDV)、小反刍兽疫病毒(PPRV)、羊痘病毒(SPV)、羊口疮病毒(ORFV)、牛病毒性腹泻病毒(BVDV)无交叉反应;敏感性最低检测限为23 copies/μL;组内与组间变异系数均小于2.5%,重复性好。使用本方法检测了598份羊的临床样品,阳性检出率(83/598)高于常规RT-PCR (30/598)。上述结果表明,本研究建立了一种灵敏、特异的CEV TaqMan实时荧光定量RT-PCR检测方法,并建议采用羊的粪便或肛拭子即可进行CEV的流调工作,这为CEV的诊断、流行病学调查提供了重要的技术支持。 展开更多
关键词 羊肠道病毒 TaqMan实时荧光定量rt-pcr 诊断
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口蹄疫病毒O型、A型和AsiaⅠ型三重实时荧光定量RT-PCR检测方法的建立及初步应用
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作者 王翠 赵雪丽 +7 位作者 王东方 王淑娟 马震原 杨海波 刘影 柴茂 谢彩华 闫若潜 《中国动物传染病学报》 北大核心 2025年第2期61-69,共9页
为建立口蹄疫病毒(FMDV)O型、A型和AsiaⅠ型三重实时荧光定量RT-PCR检测方法,本研究在比对多条FMDV基因的基础上,根据2B基因的最优保守区,设计O型、A型和Asia I型FMDV通用的反转录引物;再根据VP1基因的比对结果,以变异区为扩增靶区域,设... 为建立口蹄疫病毒(FMDV)O型、A型和AsiaⅠ型三重实时荧光定量RT-PCR检测方法,本研究在比对多条FMDV基因的基础上,根据2B基因的最优保守区,设计O型、A型和Asia I型FMDV通用的反转录引物;再根据VP1基因的比对结果,以变异区为扩增靶区域,设计3对分别针对O型、A型和AsiaⅠ型FMDV的特异性引物和TaqMan MGB探针。经优化反应体系和扩增程序等反应条件,建立基于探针技术的FDMV三重实时荧光定量RT-PCR检测方法。验证该方法的特异性、敏感性和重复性,对15份临床疑似FMDV感染样品进行检测,并与基因测序方法及RT-PCR方法进行比较分析。结果显示:本研究成功建立了FMDV三重FQ-PCR方法,实现了一步法对FMDV O型、A型和AsiaⅠ型病原样品的鉴别检测。该方法可特异性扩增FMDV O型、A型和AsiaⅠ型标准株细胞培养物,但对猪水疱性口炎病毒(VSV)等7种病原及阴性对照未出现扩增,特异性较强;对FMDV O型、A型和AsiaⅠ型阳性重组质粒标准品的最低检出限均可达到10拷贝/μL,敏感性较高;批内/批间试验变异系数为0.48%~1.55%,重复性较好;利用建立的三重FQ-PCR方法对15份临床疑似FMDV感染样品进行检测,检测结果与基因测序结果完全一致,优于RT-PCR方法。本研究建立的三重FQ-PCR方法具有敏感性高、特异性强,在同一反应体系中能同时鉴别检测出FMDV O型、A型和AsiaⅠ型等优点,能满足临床鉴别检测的需求。 展开更多
关键词 口蹄疫病毒 三重实时荧光定量rt-pcr 应用
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国标中H5亚型高致病性禽流感病毒实时荧光RT-PCR方法的优化与应用
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作者 刘朔 彭程 +3 位作者 毛秋艳 杨吉喆 蒋文明 刘华雷 《病毒学报》 北大核心 2025年第5期1522-1530,共9页
当前H5N1亚型禽流感疫情在全球范围内肆虐,且病毒不断变异,因此需要持续对检测方法的有效性进行评估。近年来,我们在临床样品检测过程中发现,国家标准《高致病性禽流感诊断技术》(GB/T 18936-2020)中H5亚型高致病性禽流感病毒实时荧光RT... 当前H5N1亚型禽流感疫情在全球范围内肆虐,且病毒不断变异,因此需要持续对检测方法的有效性进行评估。近年来,我们在临床样品检测过程中发现,国家标准《高致病性禽流感诊断技术》(GB/T 18936-2020)中H5亚型高致病性禽流感病毒实时荧光RT-PCR方法存在扩增曲线荧光值偏低的现象,对结果判定产生一定干扰。基于国标引物和探针序列与当前流行毒株的匹配性评估分析,我们设计和优化了上游引物和探针序列,并对优化方法的特异性、灵敏度和临床样品检测效果与国标方法进行了对比。结果显示,该优化方法特异性强,与其他亚型AIV和常见禽类病原体均无交叉反应;针对2.3.4.4b分支H5亚型病毒的检测灵敏度较国标方法提高了10倍,针对2.3.4.4h分支H5亚型病毒的检测灵敏度与国标方法类似;组内和组间试验Ct值变异系数介于0.17%~1.58%,具有良好的重复性;对48份家禽和野禽咽肛拭子样品检测,本优化方法检出阳性样本38份(国标方法检出37份),其中64.9%(24/37)阳性样品的Ct值较国标方法低2以上。结果表明,本研究优化的荧光RT-PCR方法可为H5亚型高致病性禽流感病毒的流行病学调查监测及快速诊断提供技术支持。 展开更多
关键词 禽流感病毒 H5亚型 实时荧光rt-pcr 检测方法
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福建蝴蝶兰病毒小RNA测序及RT-PCR检测
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作者 樊荣辉 吴建设 +2 位作者 冯子楠 钟声远 钟淮钦 《园艺学报》 北大核心 2025年第2期503-512,共10页
从福建省福州、厦门、漳州、泉州采集56个蝴蝶兰(Phalaenopsis)疑似病毒样品,按侵染症状分为褪绿、黄化褐斑、黄化皱缩等3类样品,采用小RNA测序技术和RT-PCR进行检测,共发现8种病毒,按照检出率从高到低分别为建兰花叶病毒(Cymbidium mos... 从福建省福州、厦门、漳州、泉州采集56个蝴蝶兰(Phalaenopsis)疑似病毒样品,按侵染症状分为褪绿、黄化褐斑、黄化皱缩等3类样品,采用小RNA测序技术和RT-PCR进行检测,共发现8种病毒,按照检出率从高到低分别为建兰花叶病毒(Cymbidium mosaic virus,Cy MV)85.71%,齿兰环斑病毒(Odontoglossum ringspot virus,ORSV)35.71%,白三叶草花叶病毒(white clover mosaic virus,WCMV)32.14%,淮山药X病毒(yam virus X,Ya VX)21.43%,水仙花叶病毒(Narcissus mosaic virus,Na MV)10.71%,凤果花叶病毒(pepino mosaic virus,Pe MV)8.93%,马铃薯X病毒(potato virus X,Po VX)7.14%和仙人指X病毒(Schlumbergera virus X,Sc VX)7.14%。其中,Cy MV、ORSV和WCMV的检出率在30%以上,多为复合侵染,侵染率达75.51%。以小RNA测序序列为模板,设计出特异引物,建立了同时检测5种病毒的多重RT-PCR体系;ORSV、Cy MV、WCMV、Ya VX和Po VX的引物对浓度分别为0.30,0.06,0.20,0.50和0.40μmol·L^(-1),退火温度56℃时,可同时扩增出片段大小分别为1156、908、561、292和162 bp的目的条带,特异性良好。灵敏度检测结果显示,可从≥0.0001 mg的感病植物组织中检测到这5种病毒。 展开更多
关键词 蝴蝶兰 小RNA深度测序 多重rt-pcr 病毒
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副流感病毒5型RT-PCR检测方法的建立及检测试剂盒的初步配制
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作者 吴华伟 陈晓春 +4 位作者 刘丹 秦义娴 高金源 孔冬妮 姜平 《中国兽药杂志》 2025年第11期7-15,共9页
为建立检测副流感病毒5型(Parainfluenza virus5,PIV5)的RT-PCR方法,针对PIV5L基因设计筛选出一对特异性引物,对退火温度、引物浓度、阳性对照灭活剂及浓度等进行了优化,并进行了敏感性、特异性、试剂盒配制及冻融后检测效果验证研究。... 为建立检测副流感病毒5型(Parainfluenza virus5,PIV5)的RT-PCR方法,针对PIV5L基因设计筛选出一对特异性引物,对退火温度、引物浓度、阳性对照灭活剂及浓度等进行了优化,并进行了敏感性、特异性、试剂盒配制及冻融后检测效果验证研究。结果显示:该方法仅能从PIV5分离毒种扩增到与预期大小相符的长度为314bp的特异性目的片段,最适退火温度为57.1℃,最适引物浓度为0.2umol/L,阳性对照适宜灭活剂为二乙烯亚胺(BEI),试剂盒冻融后不影响检测结果。建立的RT-PCR方法检测灵敏度为8~10TCID50,与BPIV_(3)等22种常见病毒均无交叉,特异性强、敏感性高,为PIV5的临床诊断和流行病学调查提供了技术方法。 展开更多
关键词 副流感病毒5型 rt-pcr 检测试剂
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H9N2亚型禽流感病毒双重TaqMan探针实时荧光定量RT-PCR检测方法的建立与应用
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作者 刘莉 张贺楠 +4 位作者 莫一群 徐亚亚 金丁丁 齐岩 胡增垒 《中国家禽》 北大核心 2025年第11期154-160,共7页
为建立一种快速、灵敏且特异的H9N2亚型禽流感病毒(AIV)的双重荧光定量RT-PCR检测方法,试验根据H9N2 AIV的HA基因和NA基因保守区域设计特异性引物及TaqMan探针,通过优化反应体系及条件,建立H9N2亚型AIV的双重荧光定量RT-PCR检测方法,进... 为建立一种快速、灵敏且特异的H9N2亚型禽流感病毒(AIV)的双重荧光定量RT-PCR检测方法,试验根据H9N2 AIV的HA基因和NA基因保守区域设计特异性引物及TaqMan探针,通过优化反应体系及条件,建立H9N2亚型AIV的双重荧光定量RT-PCR检测方法,进一步对该方法的灵敏度、特异性、重复性进行评估,并将建立的方法用于临床样品的检测,与H9亚型AIV荧光RT-PCR检测试剂盒进行比较。结果显示:该方法与其他亚型AIV、新城疫病毒、传染性喉气管炎病毒、禽白血病病毒、传染性法氏囊病病毒和传染性支气管炎病毒无交叉反应,检测限为0.1 copies/μL,批内和批间变异系数均小于5%,临床样本检测阳性率(24.3%)高于H9亚型AIV荧光RT-PCR检测试剂盒(18.9%)。研究表明,建立的H9N2 AIV双重TaqMan探针实时荧光定量RT-PCR检测方法特异性强,敏感性较高,能够应用于H9N2 AIV的快速检测。 展开更多
关键词 H9N2亚型禽流感病毒 TAQMAN探针 荧光定量rt-pcr HA基因 NA基因
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水貂震颤综合征-星状病毒的检测及半巢式RT-PCR检测方法的建立
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作者 王旭 刘德凯 +3 位作者 赵碧田 黄泽楷 李海名 张彦龙 《黑龙江畜牧兽医》 北大核心 2025年第10期143-150,共8页
为探究黑龙江省某水貂养殖场幼貂发生疑似水貂震颤综合征(shaking mink syndrome,SMS)继发死亡的病原并针对病原建立特异性强、灵敏度高的检测方法,试验首先采集3只病死幼貂的脑、肝脏、肾脏和肺脏组织标本,经H.E.染色制作成病理切片进... 为探究黑龙江省某水貂养殖场幼貂发生疑似水貂震颤综合征(shaking mink syndrome,SMS)继发死亡的病原并针对病原建立特异性强、灵敏度高的检测方法,试验首先采集3只病死幼貂的脑、肝脏、肾脏和肺脏组织标本,经H.E.染色制作成病理切片进行组织病理学观察,采用RT-PCR方法对水貂常见病原[星状病毒(Astrovirus,AstV)、犬瘟热病毒(Canine distemper virus,CDV)、阿留申病毒(Aleutian mink disease virus,AMDV)]进行检测,并对检测的病原进行遗传进化分析;然后建立针对病原建立半巢式RT-PCR检测方法,对建立的方法进行条件(退火温度、Taq酶体积、引物体积)优化、特异性试验、敏感性试验、重复性试验,并采用该方法对119份病死幼貂的脑组织样本进行检测。结果表明:病死水貂大脑-皮质内部分神经细胞变性、坏死,皮质内部分血管周围有炎性细胞浸润,出现管套现象,皮质内胶质细胞散在性浸润,与神经毒性AstV引起的特征性病理变化相似;其他组织未见明显病理变化。从病死幼貂脑组织中仅检测到AstV,命名为SMS-AstV-Harbin。从基于AstV ORF1b基因构建的遗传进化树中可见,SMS-AstVHarbin与Mink astrovirus isolate-SMS-AstV(登录号为GU985458.1)处于同一小分支,亲缘关系较近;与Human astrovirus UK1(登录号为KM358468.1)、Canine astrovirus strain HUN/2012/8(登录号为KX599354.1)、Feline astrovirus 2(登录号为KF499111.1)、Porcine astrovirus 3 strain NI-Brain/173-2016a/HUN(登录号为KY073231.1)、Bovine astrovirus CH13(登录号为KM035759.1)、Ovine astrovirus 2(登录号为NC_002469.1)处于不同小分支,亲缘关系较远。建立的半巢式RT-PCR检测方法的最优退火温度、Taq酶(5 U/μL)体积和引物(10μmol/L)体积分别为52℃、0.5μL和1μL。该方法能特异性地检出SMS-AstV,其cDNA最低检测限为1 pg/μL,且对3份样本的3次重复检测结果均一致。采用该方法检出SMS-AstV阳性样本117份,阳性率为98.32%。说明引起该养殖场幼貂死亡的病原为SMS-AstV,针对该病原建立的半巢式RT-PCR检测方法特异性强、灵敏度高、重复性好,可用于快速检测。 展开更多
关键词 水貂震颤综合征 水貂星状病毒 病理学观察 病毒鉴定 遗传进化分析 半巢式rt-pcr方法
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