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软件预测和MAST技术筛选mRNA反义核酸靶点的比较 被引量:4
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作者 毛建平 Zicai LIANG 毛秉智 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2004年第3期399-407,共9页
基因mRNA的结构靶点筛选是反义核酸药物研发的一个难题 .兔 (Oryctolaguscuniculus) β珠蛋白基因mRNA的结构靶位点通过运用MAST技术筛选获得 ,和计算机软件RNAstructure3 71模拟分析的位点进行了比较 ,也和寡核苷酸微阵列杂交技术筛选... 基因mRNA的结构靶点筛选是反义核酸药物研发的一个难题 .兔 (Oryctolaguscuniculus) β珠蛋白基因mRNA的结构靶位点通过运用MAST技术筛选获得 ,和计算机软件RNAstructure3 71模拟分析的位点进行了比较 ,也和寡核苷酸微阵列杂交技术筛选获得的靶点结果 (M .Natalie ,1 997)进行了比较 ,显示 :据MAST技术获得的兔 β珠蛋白基因 2个反义核酸结合靶位点 ,和用RNAstructure3 71软件给出的模拟分析的 2个靶位点相同 ,且它们与寡核苷酸微阵列杂交技术的结果完全一致 .运用MAST技术筛选获得绿色荧光蛋白 (GFP)mRNA有 4个结构靶位点 ,体外分析表明这 4个靶位点均有效 ,其中有 3个与RNAstructure3 71软件分析的靶点相同 ,但计算机模拟推荐的结构靶位点较多 ,而且随着基因长度增加确认靶位点的难度增大 ,获得的靶位点还需要实验验证 ,计算机软件模拟分析对实验筛选靶点、设计反义核酸有辅助价值 .MAST方法能筛选各种长度基因mRNA的全部可及位点和准确给定核苷酸的起止位置以供设计反义核酸 ,具有简单快捷的优点 ,将能为反义核酸设计起重要作用 . 展开更多
关键词 MRNA rnastructure3.71 MAST Β珠蛋白 GFP 可及位点 反义核酸
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RNAstructure软件不同版本对FORS-D分析的影响 被引量:2
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作者 张驰宇 李全双 +4 位作者 曹威 成婧 俞倩 孙金燕 魏继福 《江苏大学学报(医学版)》 CAS 2006年第4期294-297,309,共5页
目的:研究RNAstructure两个不同版本(4.2和3.6版)对FORS-D分析的影响。方法:以H IV-1 CRF01_AE基因组为对象,将其分隔成连续的含200碱基的片段,两个连续片段之间互相重叠150碱基。用序列打乱程序将每个片段打乱成10个碱基组成相同的随... 目的:研究RNAstructure两个不同版本(4.2和3.6版)对FORS-D分析的影响。方法:以H IV-1 CRF01_AE基因组为对象,将其分隔成连续的含200碱基的片段,两个连续片段之间互相重叠150碱基。用序列打乱程序将每个片段打乱成10个碱基组成相同的随机片段。用RNAstructure软件分别计算每个片段核酸二级结构的最小自由能。结果:两个不同版本RNAstructure软件获得的FONS、FORS-M和FORS-D值在基因组上具有完全一致的分布。用Z检验分别比较两组数据的平均值,发现4.2版获得的FONS(P<0.05)和FORS-M(P<0.01)值明显低于3.6版,而对FORS-D(Z=0.127 1,P>0.05)值没有明显影响。另外,发现GC含量不是两个版本软件造成FONS(P=0.29)和FORS-M(P=0.40)差异的主要因素。结论:使用不同版本的RNAstructure不会影响FORS-D值,但因4.2版可以产生更稳定的二级结构,并具有更高的预测准确性,使用RNAstructure 4.2版进行FORS-D分析将是更好的选择。 展开更多
关键词 RNAstructure FORS-D分析 二级结构潜能 最小自由能
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Selection of Effective Bcl-2 Antisense Oligodeoxynucleotides with Computer Software and Experimental Assay
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作者 张洹 雷小勇 《The Chinese-German Journal of Clinical Oncology》 CAS 2005年第4期248-252,共5页
Objective: To explore and investigate the selection of effective antisense oligodeoxynuleotides with the help of computer and RNAstructure folding software. Methods: Bcl-2 gene was used as the target gene and five a... Objective: To explore and investigate the selection of effective antisense oligodeoxynuleotides with the help of computer and RNAstructure folding software. Methods: Bcl-2 gene was used as the target gene and five antisense oligodeoxynuleotides were designed to be bound to Bcl-2 mRNA optimal secondary structure regions that were predicted free from intramolecular fold or instability of free energy. The five antisense oligodeoxynucleotides were studied with experimental assay of leukemia cells, including cell grow assay with tropan blue exclusion, expression of Bcl-2 protein detected with immunochemistry and flowcytometry, Bcl-2 mRNA content detected with RT-PCR technique, as well as apoptosis observed and determined with morphonological method, electrophoresis and flowcytometry. Results: The results showed that two of the five antisense oligodeoxynucleotides were effective antisense oligodeoxynucleotides, which were able to inhibit cell growth in leukemia, to decrease the level of Bcl-2 mRNA and protein, to induce apoptosis of leukemia cells significantly. Conclusion: The computational prediction of antisense efficacy is faster than other methods and more efficient, which can potentially speed the development of sequences for both research and clinical applications. 展开更多
关键词 prediction RNAstructure folding software antisense oligodeoxynucleotide (AS-ODN) Bcl-2 gene
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Constitutive model and deformation microstructure of fine-grain Mg-Zn-Y alloy solidified under high pressure 被引量:5
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作者 樊志斌 林小娉 +3 位作者 董允 徐瑞 李婵 刘宁宁 《Journal of Rare Earths》 SCIE EI CAS CSCD 2016年第9期945-951,共7页
Fine-grain Mg95.50Zn3.71Y0.79 alloy was prepared by high pressure solidification. By comparison with the conventional cast-ing alloy, the true stress-strain curve characteristic and deformation microstructure of Mg95.... Fine-grain Mg95.50Zn3.71Y0.79 alloy was prepared by high pressure solidification. By comparison with the conventional cast-ing alloy, the true stress-strain curve characteristic and deformation microstructure of Mg95.50Zn3.71Y0.79 alloy solidified under high pressure were studied via unilateralism compress tests under the strain rate of 0.001–1 s–1 and deformation temperature of 523–623 K. Constitutive equations were constructed. According to the experimental results, compared to the conventional casting alloy, the true stress-strain curve of the fine-grain alloy solidified under high pressure not only had the high strain hardening characteristic but the dynamic recrystallization softening after the peak stress was more than the working hardening and would soon reach a stable flow stress - strain state. The deformation activation energy of the alloy solidified under high pressure was 151 kJ/mol, around 49 kJ/mol lower than that of the conventional casting alloy. The fine-grain Mg-Zn-Y alloy solidified under high pressure could obtain 95 percent of dynamic recrystallization grain at 573 K during hot deformation process. 展开更多
关键词 high pressure solidification Mg95.50Zn3.71Y0.79 alloy deformation activation energy rare earths
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电子书库V3.71
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《软件》 2003年第5期22-22,共1页
电子书库面对那些常在网上冲浪的人来说.面对网上遇到许多的好文童,还有对于常自己编些小程序的人.也会有些源代码需要保存.以前采用的方法是将它们保存成一个个的文件。这样,时间一久.连我自己都记不得哪些文件是干什么用的了。... 电子书库面对那些常在网上冲浪的人来说.面对网上遇到许多的好文童,还有对于常自己编些小程序的人.也会有些源代码需要保存.以前采用的方法是将它们保存成一个个的文件。这样,时间一久.连我自己都记不得哪些文件是干什么用的了。于是也有了这个软件的产生。它有一个悬浮窗.这可以很方便摘抄文字.当在写网页.编程序时需要从大量的文档资料里摘抄某些或某段文字.或者在浏览网页时要抄一些有价值的新闻或资料.只要将这些东西一选.然后拖到悬浮窗中就可. 展开更多
关键词 WORD 97 文字处理软件 文本文件 电子书库V3.71 源代码
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