Pyrola atropurpurea Franch is an important annual herbaceous plant.Few genomic analyses have been conducted on this plant,and chloroplast genome research will enrich its genomics basis.This study is based on high-thro...Pyrola atropurpurea Franch is an important annual herbaceous plant.Few genomic analyses have been conducted on this plant,and chloroplast genome research will enrich its genomics basis.This study is based on high-throughput sequencing technology and Bioinformatics methods to obtain the sequence,structure,and other characteristics of the P.atropurpurea chloroplast genome.The result showed that the chloroplast genome of P.atropurpurea has a double-stranded circular structure with a total length of 172,535 bp and a typical four-segment structure.The genome has annotated a total of 132 functional genes,including 43 tRNAs,8 rRNAs,76 protein-coding genes,and 5 pseudo-genes.In total,358 SSR loci were checked out,mainly composed of mononucleotide and trinucleotide repeat.There are three types of scattered repetitive sequences,totaling 4223,including 2452 forward repeats,1763 palindrome repeats,and eight reverse repeats.The optimal codon usage frequency is relatively high with AT usage preference in this genome.Chloroplast genome comparative analysis in the family Ericaceae shows that the overall sequence is more complex,and there are more variations in the gene interval region.The collinearity analysis indicated that there is a complex rearrangement of species between different genera in Ericaceae.The selection pressure analysis showed that the protein-encoding genes rpl33 and rps16 were positively selected among the seven medicinal plants in Ericaceae.The maximum likelihood tree shows that the genetic relationship among P.atropurpurea,Pyrola rotundifolia,and Chimaphila japonica is relatively close.Therefore,an important data basis was provided for species identification,genetic diversity,and phylogenetic studies of P.atropurpurea and even this genus of plants.展开更多
The evolution of photosynthesis is an important feature of mixotrophic plants.Previous inferences proposed that mixotrophic taxa tend to retain most genes relating to photosynthetic functions but vary in plastid gene ...The evolution of photosynthesis is an important feature of mixotrophic plants.Previous inferences proposed that mixotrophic taxa tend to retain most genes relating to photosynthetic functions but vary in plastid gene content.However,no sequence data are available to test this hypothesis in Ericaceae.To investigate changes in plastid genomes that may result from a transition from autotrophy to mixotrophy,the plastomes of two mixotrophic plants,Pyrola decorata and Chimaphila japonica,were sequenced at Illumina's Genome Analyzer and compared to the published plastome of the autotrophic plant Rhododendron simsii,which also belongs to Ericaceae.The greatest discrepancy between mixotrophic and autotrophic plants was that ndh genes for both P.decorata and C.japonica plastomes have nearly all become pseudogenes.P.decorata and C.japonica also retained all genes directly involved in photosynthesis under strong selection.The calculated rate of nonsynonymous nucleotide substitutions and synonymous substitutions of protein-coding genes(dN/dS) showed that substitution rates in shade plants were apparently higher than those in sunlight plants.The two mixotrophic plastomes were generally very similar to that of non-parasitic plants,although ndh genes were largely pseudogenized.Photosynthesis genes under strong selection were retained in the two mixotrophs,however,with greatly increased substitution rates.Further research is needed to gain a clearer understanding of the evolution of autotrophy and mixotrophy in Ericaceae.展开更多
This study measured the antioxidant enzyme activities of Pyrola under cold and endophytic fungal infection conditions[i.e.,peroxidase(POD),catalase(CAT)and superoxide dismutase(SOD)],and the contents of malondialdehyd...This study measured the antioxidant enzyme activities of Pyrola under cold and endophytic fungal infection conditions[i.e.,peroxidase(POD),catalase(CAT)and superoxide dismutase(SOD)],and the contents of malondialdehyde(MDA),soluble sugar and soluble protein.In addition,the changes in the anatomical structure of Pyrola vegetable organ during cold stress upon inoculation with a synergistic endophytic fungus were also analyzed.It was found that the soluble sugar and soluble protein contents and POD,SOD and CAT activies of Pyrola all increased,when the plants were exposed to temperature of-5℃.In particular,the MDA contents and the POD activies significantly increased compared with those of the control.In addition,the soluble sugar and soluble protein contents increased during the treatment,which involved in both inoculation with an endophytic fungus and low temperature;however,with a reduction in the concentration of endophytic fungus,those two indicators decreased.The optimal concentration of endophytic fungus was 5×10^(7) cfu·mL^(-1).From the anatomical structure of Pyrola root,endophytic fungi were found to improve the health of.Pyrola in cold weather.These results showed that endophytic fungi played a vital role in the growth of Pyrola,which was an evergreen plant that could survive exposure to low temperature.展开更多
基金supported by the Education Reform Program of Jiangxi Provincial Department of Education(JXJG-22-23-3,JXJG-23-23-5)the“Biology and Medicine”Discipline Construction Project of Nanchang NormalUniversity(100/20149)+2 种基金Jiangxi Province Key Laboratory of Oil Crops Biology(YLKFKT202203)the Education Reform Program of Nanchang Normal University(NSJG-21-25)Nanchang Key Laboratory of Comprehensive Research and Development of Brasenia schreberi(32060078).
文摘Pyrola atropurpurea Franch is an important annual herbaceous plant.Few genomic analyses have been conducted on this plant,and chloroplast genome research will enrich its genomics basis.This study is based on high-throughput sequencing technology and Bioinformatics methods to obtain the sequence,structure,and other characteristics of the P.atropurpurea chloroplast genome.The result showed that the chloroplast genome of P.atropurpurea has a double-stranded circular structure with a total length of 172,535 bp and a typical four-segment structure.The genome has annotated a total of 132 functional genes,including 43 tRNAs,8 rRNAs,76 protein-coding genes,and 5 pseudo-genes.In total,358 SSR loci were checked out,mainly composed of mononucleotide and trinucleotide repeat.There are three types of scattered repetitive sequences,totaling 4223,including 2452 forward repeats,1763 palindrome repeats,and eight reverse repeats.The optimal codon usage frequency is relatively high with AT usage preference in this genome.Chloroplast genome comparative analysis in the family Ericaceae shows that the overall sequence is more complex,and there are more variations in the gene interval region.The collinearity analysis indicated that there is a complex rearrangement of species between different genera in Ericaceae.The selection pressure analysis showed that the protein-encoding genes rpl33 and rps16 were positively selected among the seven medicinal plants in Ericaceae.The maximum likelihood tree shows that the genetic relationship among P.atropurpurea,Pyrola rotundifolia,and Chimaphila japonica is relatively close.Therefore,an important data basis was provided for species identification,genetic diversity,and phylogenetic studies of P.atropurpurea and even this genus of plants.
文摘The evolution of photosynthesis is an important feature of mixotrophic plants.Previous inferences proposed that mixotrophic taxa tend to retain most genes relating to photosynthetic functions but vary in plastid gene content.However,no sequence data are available to test this hypothesis in Ericaceae.To investigate changes in plastid genomes that may result from a transition from autotrophy to mixotrophy,the plastomes of two mixotrophic plants,Pyrola decorata and Chimaphila japonica,were sequenced at Illumina's Genome Analyzer and compared to the published plastome of the autotrophic plant Rhododendron simsii,which also belongs to Ericaceae.The greatest discrepancy between mixotrophic and autotrophic plants was that ndh genes for both P.decorata and C.japonica plastomes have nearly all become pseudogenes.P.decorata and C.japonica also retained all genes directly involved in photosynthesis under strong selection.The calculated rate of nonsynonymous nucleotide substitutions and synonymous substitutions of protein-coding genes(dN/dS) showed that substitution rates in shade plants were apparently higher than those in sunlight plants.The two mixotrophic plastomes were generally very similar to that of non-parasitic plants,although ndh genes were largely pseudogenized.Photosynthesis genes under strong selection were retained in the two mixotrophs,however,with greatly increased substitution rates.Further research is needed to gain a clearer understanding of the evolution of autotrophy and mixotrophy in Ericaceae.
基金Supported by Postdoctoral Scientific Research Foundation Project Settled in Heilongjiang Province(LBH-Q11153)。
文摘This study measured the antioxidant enzyme activities of Pyrola under cold and endophytic fungal infection conditions[i.e.,peroxidase(POD),catalase(CAT)and superoxide dismutase(SOD)],and the contents of malondialdehyde(MDA),soluble sugar and soluble protein.In addition,the changes in the anatomical structure of Pyrola vegetable organ during cold stress upon inoculation with a synergistic endophytic fungus were also analyzed.It was found that the soluble sugar and soluble protein contents and POD,SOD and CAT activies of Pyrola all increased,when the plants were exposed to temperature of-5℃.In particular,the MDA contents and the POD activies significantly increased compared with those of the control.In addition,the soluble sugar and soluble protein contents increased during the treatment,which involved in both inoculation with an endophytic fungus and low temperature;however,with a reduction in the concentration of endophytic fungus,those two indicators decreased.The optimal concentration of endophytic fungus was 5×10^(7) cfu·mL^(-1).From the anatomical structure of Pyrola root,endophytic fungi were found to improve the health of.Pyrola in cold weather.These results showed that endophytic fungi played a vital role in the growth of Pyrola,which was an evergreen plant that could survive exposure to low temperature.
