In this paper, the system bgMath/OLAP for warehousing and online analytical processing bibliographic data is proposed. The implemented system can be useful for the users maintaining their electronic libraries with pub...In this paper, the system bgMath/OLAP for warehousing and online analytical processing bibliographic data is proposed. The implemented system can be useful for the users maintaining their electronic libraries with publications in order to monitoring, evaluating and comparing the scientific development of particular researchers, entire research groups, certain scientific fields and problems.展开更多
The spectrum user’s librarys containing 1533 familiar toxicants have been built; A method with high separability and sensitivity has been found,The RT and the detection limit of 210 familiar abuse drugs has been conf...The spectrum user’s librarys containing 1533 familiar toxicants have been built; A method with high separability and sensitivity has been found,The RT and the detection limit of 210 familiar abuse drugs has been confirmed; the processing methods to analyse spectrum data automatically have been found; It is simple,quick,sensitive and reliable,and can take place of manual operation,It is very useful to screen the familiar toxicants in unkown sample.展开更多
Interactions between chromatin segments play a large role in functional genomic assays and developments in genomic interaction detection methods have shown interacting topological domains within the genome. Among thes...Interactions between chromatin segments play a large role in functional genomic assays and developments in genomic interaction detection methods have shown interacting topological domains within the genome. Among these methods, Hi-C plays a key role. Here, we present the Genome Interaction Tools and Resources(GITAR), a software to perform a comprehensive Hi-C data analysis, including data preprocessing, normalization, and visualization, as well as analysis of topologically-associated domains(TADs). GITAR is composed of two main modules:(1)HiCtool, a Python library to process and visualize Hi-C data, including TAD analysis; and(2)processed data library, a large collection of human and mouse datasets processed using HiCtool.HiCtool leads the user step-by-step through a pipeline, which goes from the raw Hi-C data to the computation, visualization, and optimized storage of intra-chromosomal contact matrices and TAD coordinates. A large collection of standardized processed data allows the users to compare different datasets in a consistent way, while saving time to obtain data for visualization or additional analyses. More importantly, GITAR enables users without any programming or bioinformatic expertise to work with Hi-C data. GITAR is publicly available at http://genomegitar.org as an open-source software.展开更多
文摘In this paper, the system bgMath/OLAP for warehousing and online analytical processing bibliographic data is proposed. The implemented system can be useful for the users maintaining their electronic libraries with publications in order to monitoring, evaluating and comparing the scientific development of particular researchers, entire research groups, certain scientific fields and problems.
文摘The spectrum user’s librarys containing 1533 familiar toxicants have been built; A method with high separability and sensitivity has been found,The RT and the detection limit of 210 familiar abuse drugs has been confirmed; the processing methods to analyse spectrum data automatically have been found; It is simple,quick,sensitive and reliable,and can take place of manual operation,It is very useful to screen the familiar toxicants in unkown sample.
基金supported by the National Institutes of Health,United States(Grant Nos.U01CA200147 and DP1HD087990)awarded to SZ
文摘Interactions between chromatin segments play a large role in functional genomic assays and developments in genomic interaction detection methods have shown interacting topological domains within the genome. Among these methods, Hi-C plays a key role. Here, we present the Genome Interaction Tools and Resources(GITAR), a software to perform a comprehensive Hi-C data analysis, including data preprocessing, normalization, and visualization, as well as analysis of topologically-associated domains(TADs). GITAR is composed of two main modules:(1)HiCtool, a Python library to process and visualize Hi-C data, including TAD analysis; and(2)processed data library, a large collection of human and mouse datasets processed using HiCtool.HiCtool leads the user step-by-step through a pipeline, which goes from the raw Hi-C data to the computation, visualization, and optimized storage of intra-chromosomal contact matrices and TAD coordinates. A large collection of standardized processed data allows the users to compare different datasets in a consistent way, while saving time to obtain data for visualization or additional analyses. More importantly, GITAR enables users without any programming or bioinformatic expertise to work with Hi-C data. GITAR is publicly available at http://genomegitar.org as an open-source software.
