We present an approach to classify medical text at a sentence level automatically.Given the inherent complexity of medical text classification,we employ adapters based on pre-trained language models to extract informa...We present an approach to classify medical text at a sentence level automatically.Given the inherent complexity of medical text classification,we employ adapters based on pre-trained language models to extract information from medical text,facilitating more accurate classification while minimizing the number of trainable parameters.Extensive experiments conducted on various datasets demonstrate the effectiveness of our approach.展开更多
In the process of constructing domain-specific knowledge graphs,the task of relational triple extraction plays a critical role in transforming unstructured text into structured information.Existing relational triple e...In the process of constructing domain-specific knowledge graphs,the task of relational triple extraction plays a critical role in transforming unstructured text into structured information.Existing relational triple extraction models facemultiple challenges when processing domain-specific data,including insufficient utilization of semantic interaction information between entities and relations,difficulties in handling challenging samples,and the scarcity of domain-specific datasets.To address these issues,our study introduces three innovative components:Relation semantic enhancement,data augmentation,and a voting strategy,all designed to significantly improve the model’s performance in tackling domain-specific relational triple extraction tasks.We first propose an innovative attention interaction module.This method significantly enhances the semantic interaction capabilities between entities and relations by integrating semantic information fromrelation labels.Second,we propose a voting strategy that effectively combines the strengths of large languagemodels(LLMs)and fine-tuned small pre-trained language models(SLMs)to reevaluate challenging samples,thereby improving the model’s adaptability in specific domains.Additionally,we explore the use of LLMs for data augmentation,aiming to generate domain-specific datasets to alleviate the scarcity of domain data.Experiments conducted on three domain-specific datasets demonstrate that our model outperforms existing comparative models in several aspects,with F1 scores exceeding the State of the Art models by 2%,1.6%,and 0.6%,respectively,validating the effectiveness and generalizability of our approach.展开更多
Sentence classification is the process of categorizing a sentence based on the context of the sentence.Sentence categorization requires more semantic highlights than other tasks,such as dependence parsing,which requir...Sentence classification is the process of categorizing a sentence based on the context of the sentence.Sentence categorization requires more semantic highlights than other tasks,such as dependence parsing,which requires more syntactic elements.Most existing strategies focus on the general semantics of a conversation without involving the context of the sentence,recognizing the progress and comparing impacts.An ensemble pre-trained language model was taken up here to classify the conversation sentences from the conversation corpus.The conversational sentences are classified into four categories:information,question,directive,and commission.These classification label sequences are for analyzing the conversation progress and predicting the pecking order of the conversation.Ensemble of Bidirectional Encoder for Representation of Transformer(BERT),Robustly Optimized BERT pretraining Approach(RoBERTa),Generative Pre-Trained Transformer(GPT),DistilBERT and Generalized Autoregressive Pretraining for Language Understanding(XLNet)models are trained on conversation corpus with hyperparameters.Hyperparameter tuning approach is carried out for better performance on sentence classification.This Ensemble of Pre-trained Language Models with a Hyperparameter Tuning(EPLM-HT)system is trained on an annotated conversation dataset.The proposed approach outperformed compared to the base BERT,GPT,DistilBERT and XLNet transformer models.The proposed ensemble model with the fine-tuned parameters achieved an F1_score of 0.88.展开更多
Current experimental and computational methods have limitations in accurately and efficiently classifying ion channels within vast protein spaces.Here we have developed a deep learning algorithm,GPT2 Ion Channel Class...Current experimental and computational methods have limitations in accurately and efficiently classifying ion channels within vast protein spaces.Here we have developed a deep learning algorithm,GPT2 Ion Channel Classifier(GPT2-ICC),which effectively distinguishing ion channels from a test set containing approximately 239 times more non-ion-channel proteins.GPT2-ICC integrates representation learning with a large language model(LLM)-based classifier,enabling highly accurate identification of potential ion channels.Several potential ion channels were predicated from the unannotated human proteome,further demonstrating GPT2-ICC’s generalization ability.This study marks a significant advancement in artificial-intelligence-driven ion channel research,highlighting the adaptability and effectiveness of combining representation learning with LLMs to address the challenges of imbalanced protein sequence data.Moreover,it provides a valuable computational tool for uncovering previously uncharacterized ion channels.展开更多
We analyze the suitability of existing pre-trained transformer-based language models(PLMs)for abstractive text summarization on German technical healthcare texts.The study focuses on the multilingual capabilities of t...We analyze the suitability of existing pre-trained transformer-based language models(PLMs)for abstractive text summarization on German technical healthcare texts.The study focuses on the multilingual capabilities of these models and their ability to perform the task of abstractive text summarization in the healthcare field.The research hypothesis was that large language models could perform high-quality abstractive text summarization on German technical healthcare texts,even if the model is not specifically trained in that language.Through experiments,the research questions explore the performance of transformer language models in dealing with complex syntax constructs,the difference in performance between models trained in English and German,and the impact of translating the source text to English before conducting the summarization.We conducted an evaluation of four PLMs(GPT-3,a translation-based approach also utilizing GPT-3,a German language Model,and a domain-specific bio-medical model approach).The evaluation considered the informativeness using 3 types of metrics based on Recall-Oriented Understudy for Gisting Evaluation(ROUGE)and the quality of results which is manually evaluated considering 5 aspects.The results show that text summarization models could be used in the German healthcare domain and that domain-independent language models achieved the best results.The study proves that text summarization models can simplify the search for pre-existing German knowledge in various domains.展开更多
Multimodal sentence summarization(MMSS)is a new yet challenging task that aims to generate a concise summary of a long sentence and its corresponding image.Although existing methods have gained promising success in MM...Multimodal sentence summarization(MMSS)is a new yet challenging task that aims to generate a concise summary of a long sentence and its corresponding image.Although existing methods have gained promising success in MMSS,they overlook the powerful generation ability of generative pre-trained language models(GPLMs),which have shown to be effective in many text generation tasks.To fill this research gap,we propose to using GPLMs to promote the performance of MMSS.Notably,adopting GPLMs to solve MMSS inevitably faces two challenges:1)What fusion strategy should we use to inject visual information into GPLMs properly?2)How to keep the GPLM′s generation ability intact to the utmost extent when the visual feature is injected into the GPLM.To address these two challenges,we propose a vision enhanced generative pre-trained language model for MMSS,dubbed as Vision-GPLM.In Vision-GPLM,we obtain features of visual and textual modalities with two separate encoders and utilize a text decoder to produce a summary.In particular,we utilize multi-head attention to fuse the features extracted from visual and textual modalities to inject the visual feature into the GPLM.Meanwhile,we train Vision-GPLM in two stages:the vision-oriented pre-training stage and fine-tuning stage.In the vision-oriented pre-training stage,we particularly train the visual encoder by the masked language model task while the other components are frozen,aiming to obtain homogeneous representations of text and image.In the fine-tuning stage,we train all the components of Vision-GPLM by the MMSS task.Extensive experiments on a public MMSS dataset verify the superiority of our model over existing baselines.展开更多
Unsupervised text simplification has attracted much attention due to the scarcity of high-quality parallel text simplification corpora. Recent an unsupervised statistical text simplification based on phrase-based mach...Unsupervised text simplification has attracted much attention due to the scarcity of high-quality parallel text simplification corpora. Recent an unsupervised statistical text simplification based on phrase-based machine translation system (UnsupPBMT) achieved good performance, which initializes the phrase tables using the similar words obtained by word embedding modeling. Since word embedding modeling only considers the relevance between words, the phrase table in UnsupPBMT contains a lot of dissimilar words. In this paper, we propose an unsupervised statistical text simplification using pre-trained language modeling BERT for initialization. Specifically, we use BERT as a general linguistic knowledge base for predicting similar words. Experimental results show that our method outperforms the state-of-the-art unsupervised text simplification methods on three benchmarks, even outperforms some supervised baselines.展开更多
Earth observations,especially satellite data,have produced a wealth of methods and results in meeting global challenges,often presented in unstructured texts such as papers or reports.Accurate extraction of satellite ...Earth observations,especially satellite data,have produced a wealth of methods and results in meeting global challenges,often presented in unstructured texts such as papers or reports.Accurate extraction of satellite and instrument entities from these unstructured texts can help to link and reuse Earth observation resources.The direct use of an existing dictionary to extract satellite and instrument entities suffers from the problem of poor matching,which leads to low recall.In this study,we present a named entity recognition model to automatically extract satellite and instrument entities from unstructured texts.Due to the lack of manually labeled data,we apply distant supervision to automatically generate labeled training data.Accordingly,we fine-tune the pre-trained language model with early stopping and a weighted cross-entropy loss function.We propose the dictionary-based self-training method to correct the incomplete annotations caused by the distant supervision method.Experiments demonstrate that our method achieves significant improvements in both precision and recall compared to dictionary matching or standard adaptation of pre-trained language models.展开更多
Open Relation Extraction(ORE)is a task of extracting semantic relations from a text document.Current ORE systems have significantly improved their efficiency in obtaining Chinese relations,when compared with conventio...Open Relation Extraction(ORE)is a task of extracting semantic relations from a text document.Current ORE systems have significantly improved their efficiency in obtaining Chinese relations,when compared with conventional systems which heavily depend on feature engineering or syntactic parsing.However,the ORE systems do not use robust neural networks such as pre-trained language models to take advantage of large-scale unstructured data effectively.In respons to this issue,a new system entitled Chinese Open Relation Extraction with Knowledge Enhancement(CORE-KE)is presented in this paper.The CORE-KE system employs a pre-trained language model(with the support of a Bidirectional Long Short-Term Memory(BiLSTM)layer and a Masked Conditional Random Field(Masked CRF)layer)on unstructured data in order to improve Chinese open relation extraction.Entity descriptions in Wikidata and additional knowledge(in terms of triple facts)extracted from Chinese ORE datasets are used to fine-tune the pre-trained language model.In addition,syntactic features are further adopted in the training stage of the CORE-KE system for knowledge enhancement.Experimental results of the CORE-KE system on two large-scale datasets of open Chinese entities and relations demonstrate that the CORE-KE system is superior to other ORE systems.The F1-scores of the CORE-KE system on the two datasets have given a relative improvement of 20.1%and 1.3%,when compared with benchmark ORE systems,respectively.The source code is available at https:/github.COm/cjwen15/CORE-KE.展开更多
Medical named entity recognition(NER)is an area in which medical named entities are recognized from medical texts,such as diseases,drugs,surgery reports,anatomical parts,and examination documents.Conventional medical ...Medical named entity recognition(NER)is an area in which medical named entities are recognized from medical texts,such as diseases,drugs,surgery reports,anatomical parts,and examination documents.Conventional medical NER methods do not make full use of un-labelled medical texts embedded in medical documents.To address this issue,we proposed a medical NER approach based on pre-trained language models and a domain dictionary.First,we constructed a medical entity dictionary by extracting medical entities from labelled medical texts and collecting medical entities from other resources,such as the YiduN4 K data set.Second,we employed this dictionary to train domain-specific pre-trained language models using un-labelled medical texts.Third,we employed a pseudo labelling mechanism in un-labelled medical texts to automatically annotate texts and create pseudo labels.Fourth,the BiLSTM-CRF sequence tagging model was used to fine-tune the pre-trained language models.Our experiments on the un-labelled medical texts,which were extracted from Chinese electronic medical records,show that the proposed NER approach enables the strict and relaxed F1 scores to be 88.7%and 95.3%,respectively.展开更多
Multimodal sentiment analysis is an essential area of research in artificial intelligence that combines multiple modes,such as text and image,to accurately assess sentiment.However,conventional approaches that rely on...Multimodal sentiment analysis is an essential area of research in artificial intelligence that combines multiple modes,such as text and image,to accurately assess sentiment.However,conventional approaches that rely on unimodal pre-trained models for feature extraction from each modality often overlook the intrinsic connections of semantic information between modalities.This limitation is attributed to their training on unimodal data,and necessitates the use of complex fusion mechanisms for sentiment analysis.In this study,we present a novel approach that combines a vision-language pre-trained model with a proposed multimodal contrastive learning method.Our approach harnesses the power of transfer learning by utilizing a vision-language pre-trained model to extract both visual and textual representations in a unified framework.We employ a Transformer architecture to integrate these representations,thereby enabling the capture of rich semantic infor-mation in image-text pairs.To further enhance the representation learning of these pairs,we introduce our proposed multimodal contrastive learning method,which leads to improved performance in sentiment analysis tasks.Our approach is evaluated through extensive experiments on two publicly accessible datasets,where we demonstrate its effectiveness.We achieve a significant improvement in sentiment analysis accuracy,indicating the supe-riority of our approach over existing techniques.These results highlight the potential of multimodal sentiment analysis and underscore the importance of considering the intrinsic semantic connections between modalities for accurate sentiment assessment.展开更多
Large language models(LLMs)have undergone significant expansion and have been increasingly integrated across various domains.Notably,in the realm of robot task planning,LLMs harness their advanced reasoning and langua...Large language models(LLMs)have undergone significant expansion and have been increasingly integrated across various domains.Notably,in the realm of robot task planning,LLMs harness their advanced reasoning and language comprehension capabilities to formulate precise and efficient action plans based on natural language instructions.However,for embodied tasks,where robots interact with complex environments,textonly LLMs often face challenges due to a lack of compatibility with robotic visual perception.This study provides a comprehensive overview of the emerging integration of LLMs and multimodal LLMs into various robotic tasks.Additionally,we propose a framework that utilizes multimodal GPT-4V to enhance embodied task planning through the combination of natural language instructions and robot visual perceptions.Our results,based on diverse datasets,indicate that GPT-4V effectively enhances robot performance in embodied tasks.This extensive survey and evaluation of LLMs and multimodal LLMs across a variety of robotic tasks enriches the understanding of LLM-centric embodied intelligence and provides forward-looking insights towards bridging the gap in Human-Robot-Environment interaction.展开更多
The integration of artificial intelligence(AI)technology,particularly large language models(LLMs),has become essential across various sectors due to their advanced language comprehension and generation capabilities.De...The integration of artificial intelligence(AI)technology,particularly large language models(LLMs),has become essential across various sectors due to their advanced language comprehension and generation capabilities.Despite their transformative impact in fields such as machine translation and intelligent dialogue systems,LLMs face significant challenges.These challenges include safety,security,and privacy concerns that undermine their trustworthiness and effectiveness,such as hallucinations,backdoor attacks,and privacy leakage.Previous works often conflated safety issues with security concerns.In contrast,our study provides clearer and more reasonable definitions for safety,security,and privacy within the context of LLMs.Building on these definitions,we provide a comprehensive overview of the vulnerabilities and defense mechanisms related to safety,security,and privacy in LLMs.Additionally,we explore the unique research challenges posed by LLMs and suggest potential avenues for future research,aiming to enhance the robustness and reliability of LLMs in the face of emerging threats.展开更多
Software security poses substantial risks to our society because software has become part of our life. Numerous techniques have been proposed to resolve or mitigate the impact of software security issues. Among them, ...Software security poses substantial risks to our society because software has become part of our life. Numerous techniques have been proposed to resolve or mitigate the impact of software security issues. Among them, software testing and analysis are two of the critical methods, which significantly benefit from the advancements in deep learning technologies. Due to the successful use of deep learning in software security, recently,researchers have explored the potential of using large language models(LLMs) in this area. In this paper, we systematically review the results focusing on LLMs in software security. We analyze the topics of fuzzing, unit test, program repair, bug reproduction, data-driven bug detection, and bug triage. We deconstruct these techniques into several stages and analyze how LLMs can be used in the stages. We also discuss the future directions of using LLMs in software security, including the future directions for the existing use of LLMs and extensions from conventional deep learning research.展开更多
ChatGPT is a powerful artificial intelligence(AI)language model that has demonstrated significant improvements in various natural language processing(NLP) tasks. However, like any technology, it presents potential sec...ChatGPT is a powerful artificial intelligence(AI)language model that has demonstrated significant improvements in various natural language processing(NLP) tasks. However, like any technology, it presents potential security risks that need to be carefully evaluated and addressed. In this survey, we provide an overview of the current state of research on security of using ChatGPT, with aspects of bias, disinformation, ethics, misuse,attacks and privacy. We review and discuss the literature on these topics and highlight open research questions and future directions.Through this survey, we aim to contribute to the academic discourse on AI security, enriching the understanding of potential risks and mitigations. We anticipate that this survey will be valuable for various stakeholders involved in AI development and usage, including AI researchers, developers, policy makers, and end-users.展开更多
In recent years,Volunteered Geographic Information(VGI)has emerged as a crucial source of mapping data,contributed by users through crowdsourcing platforms such as OpenStreetMap.This paper presents a novel approach th...In recent years,Volunteered Geographic Information(VGI)has emerged as a crucial source of mapping data,contributed by users through crowdsourcing platforms such as OpenStreetMap.This paper presents a novel approach that Integrates Large Language Models(LLMs)into a fully automated mapping workflow,utilizing VGI data.The process leverages Prompt Engineering,which involves designing and optimizing input instructions to ensure the LLM produces desired mapping outputs.By constructing precise and detailed prompts,LLM agents are able to accurately interpret mapping requirements,and autonomously extract,analyze,and process VGI geospatial data.They dynamically interact with mapping tools to automate the entire mapping process—from data acquisition to map generation.This approach significantly streamlines the creation of high-quality mapping outputs,reducing the time and resources typically required for such tasks.Moreover,the system lowers the barrier for non-expert users,enabling them to generate accurate maps without extensive technical expertise.Through various case studies,we demonstrate the LLM application across different mapping scenarios,highlighting its potential to enhance the efficiency,accuracy,and accessibility of map production.The results suggest that LLM-powered mapping systems can not only optimize VGI data processing but also expand the usability of ubiquitous mapping across diverse fields,including urban planning and infrastructure development.展开更多
Purpose:Evaluating the quality of academic journal articles is a time consuming but critical task for national research evaluation exercises,appointments and promotion.It is therefore important to investigate whether ...Purpose:Evaluating the quality of academic journal articles is a time consuming but critical task for national research evaluation exercises,appointments and promotion.It is therefore important to investigate whether Large Language Models(LLMs)can play a role in this process.Design/methodology/approach:This article assesses which ChatGPT inputs(full text without tables,figures,and references;title and abstract;title only)produce better quality score estimates,and the extent to which scores are affected by ChatGPT models and system prompts.Findings:The optimal input is the article title and abstract,with average ChatGPT scores based on these(30 iterations on a dataset of 51 papers)correlating at 0.67 with human scores,the highest ever reported.ChatGPT 4o is slightly better than 3.5-turbo(0.66),and 4o-mini(0.66).Research limitations:The data is a convenience sample of the work of a single author,it only includes one field,and the scores are self-evaluations.Practical implications:The results suggest that article full texts might confuse LLM research quality evaluations,even though complex system instructions for the task are more effective than simple ones.Thus,whilst abstracts contain insufficient information for a thorough assessment of rigour,they may contain strong pointers about originality and significance.Finally,linear regression can be used to convert the model scores into the human scale scores,which is 31%more accurate than guessing.Originality/value:This is the first systematic comparison of the impact of different prompts,parameters and inputs for ChatGPT research quality evaluations.展开更多
AIM:To assess the possibility of using different large language models(LLMs)in ocular surface diseases by selecting five different LLMS to test their accuracy in answering specialized questions related to ocular surfa...AIM:To assess the possibility of using different large language models(LLMs)in ocular surface diseases by selecting five different LLMS to test their accuracy in answering specialized questions related to ocular surface diseases:ChatGPT-4,ChatGPT-3.5,Claude 2,PaLM2,and SenseNova.METHODS:A group of experienced ophthalmology professors were asked to develop a 100-question singlechoice question on ocular surface diseases designed to assess the performance of LLMs and human participants in answering ophthalmology specialty exam questions.The exam includes questions on the following topics:keratitis disease(20 questions),keratoconus,keratomalaciac,corneal dystrophy,corneal degeneration,erosive corneal ulcers,and corneal lesions associated with systemic diseases(20 questions),conjunctivitis disease(20 questions),trachoma,pterygoid and conjunctival tumor diseases(20 questions),and dry eye disease(20 questions).Then the total score of each LLMs and compared their mean score,mean correlation,variance,and confidence were calculated.RESULTS:GPT-4 exhibited the highest performance in terms of LLMs.Comparing the average scores of the LLMs group with the four human groups,chief physician,attending physician,regular trainee,and graduate student,it was found that except for ChatGPT-4,the total score of the rest of the LLMs is lower than that of the graduate student group,which had the lowest score in the human group.Both ChatGPT-4 and PaLM2 were more likely to give exact and correct answers,giving very little chance of an incorrect answer.ChatGPT-4 showed higher credibility when answering questions,with a success rate of 59%,but gave the wrong answer to the question 28% of the time.CONCLUSION:GPT-4 model exhibits excellent performance in both answer relevance and confidence.PaLM2 shows a positive correlation(up to 0.8)in terms of answer accuracy during the exam.In terms of answer confidence,PaLM2 is second only to GPT4 and surpasses Claude 2,SenseNova,and GPT-3.5.Despite the fact that ocular surface disease is a highly specialized discipline,GPT-4 still exhibits superior performance,suggesting that its potential and ability to be applied in this field is enormous,perhaps with the potential to be a valuable resource for medical students and clinicians in the future.展开更多
Peptide-based therapeutics hold great promise for the treatment of various diseases;however,their clinical application is often hindered by toxicity challenges.The accurate prediction of peptide toxicity is crucial fo...Peptide-based therapeutics hold great promise for the treatment of various diseases;however,their clinical application is often hindered by toxicity challenges.The accurate prediction of peptide toxicity is crucial for designing safe peptide-based therapeutics.While traditional experimental approaches are time-consuming and expensive,computational methods have emerged as viable alternatives,including similarity-based and machine learning(ML)-/deep learning(DL)-based methods.However,existing methods often struggle with robustness and generalizability.To address these challenges,we propose HyPepTox-Fuse,a novel framework that fuses protein language model(PLM)-based embeddings with conventional descriptors.HyPepTox-Fuse integrates ensemble PLM-based embeddings to achieve richer peptide representations by leveraging a cross-modal multi-head attention mechanism and Transformer architecture.A robust feature ranking and selection pipeline further refines conventional descriptors,thus enhancing prediction performance.Our framework outperforms state-of-the-art methods in cross-validation and independent evaluations,offering a scalable and reliable tool for peptide toxicity prediction.Moreover,we conducted a case study to validate the robustness and generalizability of HyPepTox-Fuse,highlighting its effectiveness in enhancing model performance.Furthermore,the HyPepTox-Fuse server is freely accessible at https://balalab-skku.org/HyPepTox-Fuse/and the source code is publicly available at https://github.com/cbbl-skku-org/HyPepTox-Fuse/.The study thus presents an intuitive platform for predicting peptide toxicity and supports reproducibility through openly available datasets.展开更多
BACKGROUND Inflammatory bowel disease(IBD)is a global health burden that affects millions of individuals worldwide,necessitating extensive patient education.Large language models(LLMs)hold promise for addressing patie...BACKGROUND Inflammatory bowel disease(IBD)is a global health burden that affects millions of individuals worldwide,necessitating extensive patient education.Large language models(LLMs)hold promise for addressing patient information needs.However,LLM use to deliver accurate and comprehensible IBD-related medical information has yet to be thoroughly investigated.AIM To assess the utility of three LLMs(ChatGPT-4.0,Claude-3-Opus,and Gemini-1.5-Pro)as a reference point for patients with IBD.METHODS In this comparative study,two gastroenterology experts generated 15 IBD-related questions that reflected common patient concerns.These questions were used to evaluate the performance of the three LLMs.The answers provided by each model were independently assessed by three IBD-related medical experts using a Likert scale focusing on accuracy,comprehensibility,and correlation.Simultaneously,three patients were invited to evaluate the comprehensibility of their answers.Finally,a readability assessment was performed.RESULTS Overall,each of the LLMs achieved satisfactory levels of accuracy,comprehensibility,and completeness when answering IBD-related questions,although their performance varies.All of the investigated models demonstrated strengths in providing basic disease information such as IBD definition as well as its common symptoms and diagnostic methods.Nevertheless,when dealing with more complex medical advice,such as medication side effects,dietary adjustments,and complication risks,the quality of answers was inconsistent between the LLMs.Notably,Claude-3-Opus generated answers with better readability than the other two models.CONCLUSION LLMs have the potential as educational tools for patients with IBD;however,there are discrepancies between the models.Further optimization and the development of specialized models are necessary to ensure the accuracy and safety of the information provided.展开更多
文摘We present an approach to classify medical text at a sentence level automatically.Given the inherent complexity of medical text classification,we employ adapters based on pre-trained language models to extract information from medical text,facilitating more accurate classification while minimizing the number of trainable parameters.Extensive experiments conducted on various datasets demonstrate the effectiveness of our approach.
基金Science and Technology Innovation 2030-Major Project of“New Generation Artificial Intelligence”granted by Ministry of Science and Technology,Grant Number 2020AAA0109300.
文摘In the process of constructing domain-specific knowledge graphs,the task of relational triple extraction plays a critical role in transforming unstructured text into structured information.Existing relational triple extraction models facemultiple challenges when processing domain-specific data,including insufficient utilization of semantic interaction information between entities and relations,difficulties in handling challenging samples,and the scarcity of domain-specific datasets.To address these issues,our study introduces three innovative components:Relation semantic enhancement,data augmentation,and a voting strategy,all designed to significantly improve the model’s performance in tackling domain-specific relational triple extraction tasks.We first propose an innovative attention interaction module.This method significantly enhances the semantic interaction capabilities between entities and relations by integrating semantic information fromrelation labels.Second,we propose a voting strategy that effectively combines the strengths of large languagemodels(LLMs)and fine-tuned small pre-trained language models(SLMs)to reevaluate challenging samples,thereby improving the model’s adaptability in specific domains.Additionally,we explore the use of LLMs for data augmentation,aiming to generate domain-specific datasets to alleviate the scarcity of domain data.Experiments conducted on three domain-specific datasets demonstrate that our model outperforms existing comparative models in several aspects,with F1 scores exceeding the State of the Art models by 2%,1.6%,and 0.6%,respectively,validating the effectiveness and generalizability of our approach.
文摘Sentence classification is the process of categorizing a sentence based on the context of the sentence.Sentence categorization requires more semantic highlights than other tasks,such as dependence parsing,which requires more syntactic elements.Most existing strategies focus on the general semantics of a conversation without involving the context of the sentence,recognizing the progress and comparing impacts.An ensemble pre-trained language model was taken up here to classify the conversation sentences from the conversation corpus.The conversational sentences are classified into four categories:information,question,directive,and commission.These classification label sequences are for analyzing the conversation progress and predicting the pecking order of the conversation.Ensemble of Bidirectional Encoder for Representation of Transformer(BERT),Robustly Optimized BERT pretraining Approach(RoBERTa),Generative Pre-Trained Transformer(GPT),DistilBERT and Generalized Autoregressive Pretraining for Language Understanding(XLNet)models are trained on conversation corpus with hyperparameters.Hyperparameter tuning approach is carried out for better performance on sentence classification.This Ensemble of Pre-trained Language Models with a Hyperparameter Tuning(EPLM-HT)system is trained on an annotated conversation dataset.The proposed approach outperformed compared to the base BERT,GPT,DistilBERT and XLNet transformer models.The proposed ensemble model with the fine-tuned parameters achieved an F1_score of 0.88.
基金funded by grants from the National Key Research and Development Program of China(Grant Nos.:2022YFE0205600 and 2022YFC3400504)the National Natural Science Foundation of China(Grant Nos.:82373792 and 82273857)the Fundamental Research Funds for the Central Universities,China,and the East China Normal University Medicine and Health Joint Fund,China(Grant No.:2022JKXYD07001).
文摘Current experimental and computational methods have limitations in accurately and efficiently classifying ion channels within vast protein spaces.Here we have developed a deep learning algorithm,GPT2 Ion Channel Classifier(GPT2-ICC),which effectively distinguishing ion channels from a test set containing approximately 239 times more non-ion-channel proteins.GPT2-ICC integrates representation learning with a large language model(LLM)-based classifier,enabling highly accurate identification of potential ion channels.Several potential ion channels were predicated from the unannotated human proteome,further demonstrating GPT2-ICC’s generalization ability.This study marks a significant advancement in artificial-intelligence-driven ion channel research,highlighting the adaptability and effectiveness of combining representation learning with LLMs to address the challenges of imbalanced protein sequence data.Moreover,it provides a valuable computational tool for uncovering previously uncharacterized ion channels.
文摘We analyze the suitability of existing pre-trained transformer-based language models(PLMs)for abstractive text summarization on German technical healthcare texts.The study focuses on the multilingual capabilities of these models and their ability to perform the task of abstractive text summarization in the healthcare field.The research hypothesis was that large language models could perform high-quality abstractive text summarization on German technical healthcare texts,even if the model is not specifically trained in that language.Through experiments,the research questions explore the performance of transformer language models in dealing with complex syntax constructs,the difference in performance between models trained in English and German,and the impact of translating the source text to English before conducting the summarization.We conducted an evaluation of four PLMs(GPT-3,a translation-based approach also utilizing GPT-3,a German language Model,and a domain-specific bio-medical model approach).The evaluation considered the informativeness using 3 types of metrics based on Recall-Oriented Understudy for Gisting Evaluation(ROUGE)and the quality of results which is manually evaluated considering 5 aspects.The results show that text summarization models could be used in the German healthcare domain and that domain-independent language models achieved the best results.The study proves that text summarization models can simplify the search for pre-existing German knowledge in various domains.
文摘Multimodal sentence summarization(MMSS)is a new yet challenging task that aims to generate a concise summary of a long sentence and its corresponding image.Although existing methods have gained promising success in MMSS,they overlook the powerful generation ability of generative pre-trained language models(GPLMs),which have shown to be effective in many text generation tasks.To fill this research gap,we propose to using GPLMs to promote the performance of MMSS.Notably,adopting GPLMs to solve MMSS inevitably faces two challenges:1)What fusion strategy should we use to inject visual information into GPLMs properly?2)How to keep the GPLM′s generation ability intact to the utmost extent when the visual feature is injected into the GPLM.To address these two challenges,we propose a vision enhanced generative pre-trained language model for MMSS,dubbed as Vision-GPLM.In Vision-GPLM,we obtain features of visual and textual modalities with two separate encoders and utilize a text decoder to produce a summary.In particular,we utilize multi-head attention to fuse the features extracted from visual and textual modalities to inject the visual feature into the GPLM.Meanwhile,we train Vision-GPLM in two stages:the vision-oriented pre-training stage and fine-tuning stage.In the vision-oriented pre-training stage,we particularly train the visual encoder by the masked language model task while the other components are frozen,aiming to obtain homogeneous representations of text and image.In the fine-tuning stage,we train all the components of Vision-GPLM by the MMSS task.Extensive experiments on a public MMSS dataset verify the superiority of our model over existing baselines.
基金supported by the National Natural Science Foundation of China(Grant Nos.62076217 and 61906060)and the Program for Changjiang Scholars and Innovative Research Team in University(PCSIRT)of the Ministry of Education,China(IRT17R32).
文摘Unsupervised text simplification has attracted much attention due to the scarcity of high-quality parallel text simplification corpora. Recent an unsupervised statistical text simplification based on phrase-based machine translation system (UnsupPBMT) achieved good performance, which initializes the phrase tables using the similar words obtained by word embedding modeling. Since word embedding modeling only considers the relevance between words, the phrase table in UnsupPBMT contains a lot of dissimilar words. In this paper, we propose an unsupervised statistical text simplification using pre-trained language modeling BERT for initialization. Specifically, we use BERT as a general linguistic knowledge base for predicting similar words. Experimental results show that our method outperforms the state-of-the-art unsupervised text simplification methods on three benchmarks, even outperforms some supervised baselines.
基金supported by the National Key Research and Development Program of China:[grant number 2019YFE0126400].
文摘Earth observations,especially satellite data,have produced a wealth of methods and results in meeting global challenges,often presented in unstructured texts such as papers or reports.Accurate extraction of satellite and instrument entities from these unstructured texts can help to link and reuse Earth observation resources.The direct use of an existing dictionary to extract satellite and instrument entities suffers from the problem of poor matching,which leads to low recall.In this study,we present a named entity recognition model to automatically extract satellite and instrument entities from unstructured texts.Due to the lack of manually labeled data,we apply distant supervision to automatically generate labeled training data.Accordingly,we fine-tune the pre-trained language model with early stopping and a weighted cross-entropy loss function.We propose the dictionary-based self-training method to correct the incomplete annotations caused by the distant supervision method.Experiments demonstrate that our method achieves significant improvements in both precision and recall compared to dictionary matching or standard adaptation of pre-trained language models.
基金the high-level university construction special project of Guangdong province,China 2019(No.5041700175)the new engineering research and practice project of the Ministry of Education,China(NO.E-RGZN20201036)。
文摘Open Relation Extraction(ORE)is a task of extracting semantic relations from a text document.Current ORE systems have significantly improved their efficiency in obtaining Chinese relations,when compared with conventional systems which heavily depend on feature engineering or syntactic parsing.However,the ORE systems do not use robust neural networks such as pre-trained language models to take advantage of large-scale unstructured data effectively.In respons to this issue,a new system entitled Chinese Open Relation Extraction with Knowledge Enhancement(CORE-KE)is presented in this paper.The CORE-KE system employs a pre-trained language model(with the support of a Bidirectional Long Short-Term Memory(BiLSTM)layer and a Masked Conditional Random Field(Masked CRF)layer)on unstructured data in order to improve Chinese open relation extraction.Entity descriptions in Wikidata and additional knowledge(in terms of triple facts)extracted from Chinese ORE datasets are used to fine-tune the pre-trained language model.In addition,syntactic features are further adopted in the training stage of the CORE-KE system for knowledge enhancement.Experimental results of the CORE-KE system on two large-scale datasets of open Chinese entities and relations demonstrate that the CORE-KE system is superior to other ORE systems.The F1-scores of the CORE-KE system on the two datasets have given a relative improvement of 20.1%and 1.3%,when compared with benchmark ORE systems,respectively.The source code is available at https:/github.COm/cjwen15/CORE-KE.
基金This work is supported in part by the Guangdong Science and Technology grant(No.2016A010101033)the Hong Kong and Macao joint research and development grant with Wuyi University(No.2019WGAH21).
文摘Medical named entity recognition(NER)is an area in which medical named entities are recognized from medical texts,such as diseases,drugs,surgery reports,anatomical parts,and examination documents.Conventional medical NER methods do not make full use of un-labelled medical texts embedded in medical documents.To address this issue,we proposed a medical NER approach based on pre-trained language models and a domain dictionary.First,we constructed a medical entity dictionary by extracting medical entities from labelled medical texts and collecting medical entities from other resources,such as the YiduN4 K data set.Second,we employed this dictionary to train domain-specific pre-trained language models using un-labelled medical texts.Third,we employed a pseudo labelling mechanism in un-labelled medical texts to automatically annotate texts and create pseudo labels.Fourth,the BiLSTM-CRF sequence tagging model was used to fine-tune the pre-trained language models.Our experiments on the un-labelled medical texts,which were extracted from Chinese electronic medical records,show that the proposed NER approach enables the strict and relaxed F1 scores to be 88.7%and 95.3%,respectively.
基金supported by Science and Technology Research Project of Jiangxi Education Department.Project Grant No.GJJ2203306.
文摘Multimodal sentiment analysis is an essential area of research in artificial intelligence that combines multiple modes,such as text and image,to accurately assess sentiment.However,conventional approaches that rely on unimodal pre-trained models for feature extraction from each modality often overlook the intrinsic connections of semantic information between modalities.This limitation is attributed to their training on unimodal data,and necessitates the use of complex fusion mechanisms for sentiment analysis.In this study,we present a novel approach that combines a vision-language pre-trained model with a proposed multimodal contrastive learning method.Our approach harnesses the power of transfer learning by utilizing a vision-language pre-trained model to extract both visual and textual representations in a unified framework.We employ a Transformer architecture to integrate these representations,thereby enabling the capture of rich semantic infor-mation in image-text pairs.To further enhance the representation learning of these pairs,we introduce our proposed multimodal contrastive learning method,which leads to improved performance in sentiment analysis tasks.Our approach is evaluated through extensive experiments on two publicly accessible datasets,where we demonstrate its effectiveness.We achieve a significant improvement in sentiment analysis accuracy,indicating the supe-riority of our approach over existing techniques.These results highlight the potential of multimodal sentiment analysis and underscore the importance of considering the intrinsic semantic connections between modalities for accurate sentiment assessment.
基金supported by National Natural Science Foundation of China(62376219 and 62006194)Foundational Research Project in Specialized Discipline(Grant No.G2024WD0146)Faculty Construction Project(Grant No.24GH0201148).
文摘Large language models(LLMs)have undergone significant expansion and have been increasingly integrated across various domains.Notably,in the realm of robot task planning,LLMs harness their advanced reasoning and language comprehension capabilities to formulate precise and efficient action plans based on natural language instructions.However,for embodied tasks,where robots interact with complex environments,textonly LLMs often face challenges due to a lack of compatibility with robotic visual perception.This study provides a comprehensive overview of the emerging integration of LLMs and multimodal LLMs into various robotic tasks.Additionally,we propose a framework that utilizes multimodal GPT-4V to enhance embodied task planning through the combination of natural language instructions and robot visual perceptions.Our results,based on diverse datasets,indicate that GPT-4V effectively enhances robot performance in embodied tasks.This extensive survey and evaluation of LLMs and multimodal LLMs across a variety of robotic tasks enriches the understanding of LLM-centric embodied intelligence and provides forward-looking insights towards bridging the gap in Human-Robot-Environment interaction.
基金supported by the National Key R&D Program of China under Grant No.2022YFB3103500the National Natural Science Foundation of China under Grants No.62402087 and No.62020106013+3 种基金the Sichuan Science and Technology Program under Grant No.2023ZYD0142the Chengdu Science and Technology Program under Grant No.2023-XT00-00002-GXthe Fundamental Research Funds for Chinese Central Universities under Grants No.ZYGX2020ZB027 and No.Y030232063003002the Postdoctoral Innovation Talents Support Program under Grant No.BX20230060.
文摘The integration of artificial intelligence(AI)technology,particularly large language models(LLMs),has become essential across various sectors due to their advanced language comprehension and generation capabilities.Despite their transformative impact in fields such as machine translation and intelligent dialogue systems,LLMs face significant challenges.These challenges include safety,security,and privacy concerns that undermine their trustworthiness and effectiveness,such as hallucinations,backdoor attacks,and privacy leakage.Previous works often conflated safety issues with security concerns.In contrast,our study provides clearer and more reasonable definitions for safety,security,and privacy within the context of LLMs.Building on these definitions,we provide a comprehensive overview of the vulnerabilities and defense mechanisms related to safety,security,and privacy in LLMs.Additionally,we explore the unique research challenges posed by LLMs and suggest potential avenues for future research,aiming to enhance the robustness and reliability of LLMs in the face of emerging threats.
文摘Software security poses substantial risks to our society because software has become part of our life. Numerous techniques have been proposed to resolve or mitigate the impact of software security issues. Among them, software testing and analysis are two of the critical methods, which significantly benefit from the advancements in deep learning technologies. Due to the successful use of deep learning in software security, recently,researchers have explored the potential of using large language models(LLMs) in this area. In this paper, we systematically review the results focusing on LLMs in software security. We analyze the topics of fuzzing, unit test, program repair, bug reproduction, data-driven bug detection, and bug triage. We deconstruct these techniques into several stages and analyze how LLMs can be used in the stages. We also discuss the future directions of using LLMs in software security, including the future directions for the existing use of LLMs and extensions from conventional deep learning research.
文摘ChatGPT is a powerful artificial intelligence(AI)language model that has demonstrated significant improvements in various natural language processing(NLP) tasks. However, like any technology, it presents potential security risks that need to be carefully evaluated and addressed. In this survey, we provide an overview of the current state of research on security of using ChatGPT, with aspects of bias, disinformation, ethics, misuse,attacks and privacy. We review and discuss the literature on these topics and highlight open research questions and future directions.Through this survey, we aim to contribute to the academic discourse on AI security, enriching the understanding of potential risks and mitigations. We anticipate that this survey will be valuable for various stakeholders involved in AI development and usage, including AI researchers, developers, policy makers, and end-users.
基金National Natural Science Foundation of china(No.42371446)Natural Science Foundatiorof Hubei Province(No.2024AFD412)Fundamental Research Funds for National Universities,China University of Geosciences(Wuhan)(No.2024XLA17).
文摘In recent years,Volunteered Geographic Information(VGI)has emerged as a crucial source of mapping data,contributed by users through crowdsourcing platforms such as OpenStreetMap.This paper presents a novel approach that Integrates Large Language Models(LLMs)into a fully automated mapping workflow,utilizing VGI data.The process leverages Prompt Engineering,which involves designing and optimizing input instructions to ensure the LLM produces desired mapping outputs.By constructing precise and detailed prompts,LLM agents are able to accurately interpret mapping requirements,and autonomously extract,analyze,and process VGI geospatial data.They dynamically interact with mapping tools to automate the entire mapping process—from data acquisition to map generation.This approach significantly streamlines the creation of high-quality mapping outputs,reducing the time and resources typically required for such tasks.Moreover,the system lowers the barrier for non-expert users,enabling them to generate accurate maps without extensive technical expertise.Through various case studies,we demonstrate the LLM application across different mapping scenarios,highlighting its potential to enhance the efficiency,accuracy,and accessibility of map production.The results suggest that LLM-powered mapping systems can not only optimize VGI data processing but also expand the usability of ubiquitous mapping across diverse fields,including urban planning and infrastructure development.
文摘Purpose:Evaluating the quality of academic journal articles is a time consuming but critical task for national research evaluation exercises,appointments and promotion.It is therefore important to investigate whether Large Language Models(LLMs)can play a role in this process.Design/methodology/approach:This article assesses which ChatGPT inputs(full text without tables,figures,and references;title and abstract;title only)produce better quality score estimates,and the extent to which scores are affected by ChatGPT models and system prompts.Findings:The optimal input is the article title and abstract,with average ChatGPT scores based on these(30 iterations on a dataset of 51 papers)correlating at 0.67 with human scores,the highest ever reported.ChatGPT 4o is slightly better than 3.5-turbo(0.66),and 4o-mini(0.66).Research limitations:The data is a convenience sample of the work of a single author,it only includes one field,and the scores are self-evaluations.Practical implications:The results suggest that article full texts might confuse LLM research quality evaluations,even though complex system instructions for the task are more effective than simple ones.Thus,whilst abstracts contain insufficient information for a thorough assessment of rigour,they may contain strong pointers about originality and significance.Finally,linear regression can be used to convert the model scores into the human scale scores,which is 31%more accurate than guessing.Originality/value:This is the first systematic comparison of the impact of different prompts,parameters and inputs for ChatGPT research quality evaluations.
基金Supported by National Natural Science Foundation of China(No.82160195,No.82460203)Degree and Postgraduate Education Teaching Reform Project of Jiangxi Province(No.JXYJG-2020-026).
文摘AIM:To assess the possibility of using different large language models(LLMs)in ocular surface diseases by selecting five different LLMS to test their accuracy in answering specialized questions related to ocular surface diseases:ChatGPT-4,ChatGPT-3.5,Claude 2,PaLM2,and SenseNova.METHODS:A group of experienced ophthalmology professors were asked to develop a 100-question singlechoice question on ocular surface diseases designed to assess the performance of LLMs and human participants in answering ophthalmology specialty exam questions.The exam includes questions on the following topics:keratitis disease(20 questions),keratoconus,keratomalaciac,corneal dystrophy,corneal degeneration,erosive corneal ulcers,and corneal lesions associated with systemic diseases(20 questions),conjunctivitis disease(20 questions),trachoma,pterygoid and conjunctival tumor diseases(20 questions),and dry eye disease(20 questions).Then the total score of each LLMs and compared their mean score,mean correlation,variance,and confidence were calculated.RESULTS:GPT-4 exhibited the highest performance in terms of LLMs.Comparing the average scores of the LLMs group with the four human groups,chief physician,attending physician,regular trainee,and graduate student,it was found that except for ChatGPT-4,the total score of the rest of the LLMs is lower than that of the graduate student group,which had the lowest score in the human group.Both ChatGPT-4 and PaLM2 were more likely to give exact and correct answers,giving very little chance of an incorrect answer.ChatGPT-4 showed higher credibility when answering questions,with a success rate of 59%,but gave the wrong answer to the question 28% of the time.CONCLUSION:GPT-4 model exhibits excellent performance in both answer relevance and confidence.PaLM2 shows a positive correlation(up to 0.8)in terms of answer accuracy during the exam.In terms of answer confidence,PaLM2 is second only to GPT4 and surpasses Claude 2,SenseNova,and GPT-3.5.Despite the fact that ocular surface disease is a highly specialized discipline,GPT-4 still exhibits superior performance,suggesting that its potential and ability to be applied in this field is enormous,perhaps with the potential to be a valuable resource for medical students and clinicians in the future.
基金supported by the National Research Foundation of Korea(NRF)funded by the Ministry of Science and ICT,Republic of Korea(Grant No.:RS-2024-00344752)supported by the Department of Integrative Biotechnology,Sungkyunkwan University(SKKU)and the BK21 FOUR Project,Republic of Korea.
文摘Peptide-based therapeutics hold great promise for the treatment of various diseases;however,their clinical application is often hindered by toxicity challenges.The accurate prediction of peptide toxicity is crucial for designing safe peptide-based therapeutics.While traditional experimental approaches are time-consuming and expensive,computational methods have emerged as viable alternatives,including similarity-based and machine learning(ML)-/deep learning(DL)-based methods.However,existing methods often struggle with robustness and generalizability.To address these challenges,we propose HyPepTox-Fuse,a novel framework that fuses protein language model(PLM)-based embeddings with conventional descriptors.HyPepTox-Fuse integrates ensemble PLM-based embeddings to achieve richer peptide representations by leveraging a cross-modal multi-head attention mechanism and Transformer architecture.A robust feature ranking and selection pipeline further refines conventional descriptors,thus enhancing prediction performance.Our framework outperforms state-of-the-art methods in cross-validation and independent evaluations,offering a scalable and reliable tool for peptide toxicity prediction.Moreover,we conducted a case study to validate the robustness and generalizability of HyPepTox-Fuse,highlighting its effectiveness in enhancing model performance.Furthermore,the HyPepTox-Fuse server is freely accessible at https://balalab-skku.org/HyPepTox-Fuse/and the source code is publicly available at https://github.com/cbbl-skku-org/HyPepTox-Fuse/.The study thus presents an intuitive platform for predicting peptide toxicity and supports reproducibility through openly available datasets.
基金Supported by the China Health Promotion Foundation Young Doctors'Research Foundation for Inflammatory Bowel Disease,the Taishan Scholars Program of Shandong Province,China,No.tsqn202306343National Natural Science Foundation of China,No.82270578.
文摘BACKGROUND Inflammatory bowel disease(IBD)is a global health burden that affects millions of individuals worldwide,necessitating extensive patient education.Large language models(LLMs)hold promise for addressing patient information needs.However,LLM use to deliver accurate and comprehensible IBD-related medical information has yet to be thoroughly investigated.AIM To assess the utility of three LLMs(ChatGPT-4.0,Claude-3-Opus,and Gemini-1.5-Pro)as a reference point for patients with IBD.METHODS In this comparative study,two gastroenterology experts generated 15 IBD-related questions that reflected common patient concerns.These questions were used to evaluate the performance of the three LLMs.The answers provided by each model were independently assessed by three IBD-related medical experts using a Likert scale focusing on accuracy,comprehensibility,and correlation.Simultaneously,three patients were invited to evaluate the comprehensibility of their answers.Finally,a readability assessment was performed.RESULTS Overall,each of the LLMs achieved satisfactory levels of accuracy,comprehensibility,and completeness when answering IBD-related questions,although their performance varies.All of the investigated models demonstrated strengths in providing basic disease information such as IBD definition as well as its common symptoms and diagnostic methods.Nevertheless,when dealing with more complex medical advice,such as medication side effects,dietary adjustments,and complication risks,the quality of answers was inconsistent between the LLMs.Notably,Claude-3-Opus generated answers with better readability than the other two models.CONCLUSION LLMs have the potential as educational tools for patients with IBD;however,there are discrepancies between the models.Further optimization and the development of specialized models are necessary to ensure the accuracy and safety of the information provided.
