In this study,thyme essential oil(TEO)nanoemulsion(tPTNs)was constructed with transglutaminase(TGase)-modified potato protein,and its antibacterial activity and mechanism of action were evaluated and explored.Results ...In this study,thyme essential oil(TEO)nanoemulsion(tPTNs)was constructed with transglutaminase(TGase)-modified potato protein,and its antibacterial activity and mechanism of action were evaluated and explored.Results indicated that tPTNs exhibited great antibacterial activity against both Staphylococcus aureus and Escherichia coli,with minimal inhibitory concentration(MIC)and minimum bactericidal concentration(MBC)of 2.5 and 5.0 mg/mL,respectively.Also,the antibacterial effects of tPTNs were concentration-dependent.We observed a significant decrease in the absolute value of the zeta potential,and significant increases in particle size,cell membrane hydrophobicity,conductivity,the release of metal ions,and the leakage of nucleic acid as the concentration of tPTNs increased from 0 mg/mL to MBC.Furthermore,sodium dodecyl sulphate-polyacrylamide gel electrophoresis(SDS-PAGE)demonstrated that protein synthesis was inhibited or even disrupted.Analysis by liquid chromatography-mass spectrometry(LC-MS)indicated that treatment with tPTNs caused significant changes in bacterial metabolites,1117 and 692 differential metabolites being found for S.aureus and E.coli,respectively.The differential metabolites were involved in nucleotide metabolism,amino acid metabolism,tricarboxylic acid cycle and other metabolic pathways.These findings provide valuable insights for the application of thyme essential oil as an efficient antibacterial agent and for the understanding of its mechanism of action.展开更多
An accurate assessment of host and pathogen gene expression during infection is critical for understanding the molecular aspects of host-pathogen interactions.Often,pathogen-derived transcripts are difficult to ascert...An accurate assessment of host and pathogen gene expression during infection is critical for understanding the molecular aspects of host-pathogen interactions.Often,pathogen-derived transcripts are difficult to ascertain at early infection stages owing to the unfavourable transcript representation compared to the host genes.In this study,we compare two sequencing techniques,RNAseq and enrichment sequencing(RenSeq and PenSeq)of cDNA,to investigate gene expression patterns in the doubled monoploid potato(DM)infected with the late blight pathogen Phytophthora infestans.Our results reveal distinct advantages of cDNA RenSeq and PenSeq over traditional RNAseq in terms of target gene representation and transcriptional quantification at early infection stages.Throughout the infection time course,cDNA enrichment sequencing enables transcriptomic analyses for more targeted host and pathogen genes.For highly expressed genes that were sampled in parallel by both cDNA enrichment and RNAseq,a high level of concordance in expression profiles is observed,indicative of at least semi-quantitative gene expression representation following enrichment.展开更多
The formation of root system architecture(RSA)plays a crucial role in plant growth.OsDRO1 is known to have a function in controlling RSA in rice,however,the role of potato StDRO2,a homolog of rice OsDRO1,in root growt...The formation of root system architecture(RSA)plays a crucial role in plant growth.OsDRO1 is known to have a function in controlling RSA in rice,however,the role of potato StDRO2,a homolog of rice OsDRO1,in root growth remains unclear.In this study,we obtained potato dro2 mutant lines by Clustered Regularly Interspaced Short Palindromic Repeats-CRISPR-Associated 9(CRISPR/Cas9)-mediated genome editing system.The mutant lines were generated from a splicing defect of the StDRO2 intron 1,which causes a nonsense mutation in StDRO2.Furthermore,the secondary structure of StDRO2 mRNA analyzed with RNAfold Web Server was altered in the dro2 mutant.Mutation of StDRO2 conveys potato adaptation through changing the RSA via alteration of auxin transport under drought stress.The potato dro2 lines showed higher plant height,longer root length,smaller root growth angle and increased tuber weight than the wild-type.The alteration of RSA was associated with a disturbance of IAA distribution in the dro2 mutant,and the levels of StPIN7 and StPIN10 detected by using real-time PCR were up-regulated in the roots of potato dro2 lines grown under drought stress.Moreover,the microRNAs(miRNAs)PmiREN024536 and PmiREN024486 targeted the StDRO2 gene,and auxin positively and negatively regulated the expression of StDRO2 and the miRNAs PmiREN024536 and PmiREN024486,respectively,in the potato roots.Our data shows that a regulatory network involving auxin,StDRO2,PmiREN024536 and PmiREN024486 can control RSA to convey potato fitness under drought stress.展开更多
Increasing access to locally produced, safe, nutritious and affordable complementary foods is essential to combat micronutrient deficiencies in young children in low- and middle-income countries. Two formulations of s...Increasing access to locally produced, safe, nutritious and affordable complementary foods is essential to combat micronutrient deficiencies in young children in low- and middle-income countries. Two formulations of sweets based on jujube, baobab fruit powder and sweet potato puree were produced, and their nutritional values and sensory properties such as taste, smell, color and acceptability were assessed. The formulation containing the most jujube powder, baobab fruit and sweet potato puree gave the best nutritional value. The sweets are rich in calcium (259.80 mg/100 g), magnesium (67.98 mg/100 g), potassium (782.04 mg/100 g), vitamin C (32.37 mg/100 g), iron (6.45 g mg/100 g) and zinc (0.97 mg/100 g). Sensory tests on the two formulations showed acceptability scores ranging from 81.26% to 84.58%, well above the minimum acceptable threshold. Candies with jujube, baobab fruit powder and sweet potato puree could be an alternative for preventing micronutrient deficiencies.展开更多
This study provides a comprehensive summary of the current development status of the potato industry in Liangshan Prefecture,and analyzes the primary factors that hinder the advancement of this industry,including a lo...This study provides a comprehensive summary of the current development status of the potato industry in Liangshan Prefecture,and analyzes the primary factors that hinder the advancement of this industry,including a low degree of scale,a limited popularization rate of high-quality seeds,insufficient mechanization,a low level of commercialization,inadequate technological support,minimal integration between the secondary and tertiary industries,and an ineffective mechanism for connecting and benefiting farmers.Furthermore,it presents a problem-oriented approach that is grounded in the current climatic,resource,water,and soil conditions of Liangshan Prefecture,and proposes several pathways to promote the high-quality development of the potato industry.The strategies include:expanding coverage and increasing production volume as foundational steps to ensure food security;enhancing quality and efficiency as key drivers to stimulate agricultural advancement through scientific and technological innovation;focusing on the integration of the three industries to achieve industrial revitalization;implementing risk management measures as a preventive strategy to ensure industrial stability;establishing incentive policies to foster production enthusiasm;and ultimately assisting farmers in increasing their income to achieve the overarching goal of improving the livelihoods of the population.展开更多
Sweet potato is one of the most important crops in Côte d’Ivoire. However, some constraints related to climate change limit its production. This study evaluated the agronomic and technological performances of ei...Sweet potato is one of the most important crops in Côte d’Ivoire. However, some constraints related to climate change limit its production. This study evaluated the agronomic and technological performances of eight varieties of orange-fleshed of sweet potato (Ipomoea batatas (L.) to identify the most promising ones. The results show three groups of varieties with different agronomic performances. Group 1 composed of Irene and Vita is characterized by low production of small and large tuberous roots, low number of productive plants and low yield. Group 2 consisting mainly of Kabode is characterized by high production and weight of large tuberous roots as well as high yield. Group 3, composed of Tacha-2 Ininda, Ejumula Gloria, TIB-440060, CIP-199062-1, Bela bela is characterized by high production of small and large tuberous roots, high number of productive plants and average yield. The TIB-440060 variety has a recovery rate of 100%. The Irene, Kabode, Vita, Kabode varieties were resistant to viral and fungal diseases. In terms of technological quality, the TIB-440060 and CIP-199062-1 varieties have the best organoleptic qualities. Given the agronomic performances of the Kabode, TIB-440060 and CIP-199062-1 varieties, could be selected as the elites varieties and distributed to producers.展开更多
Re-domestication of diploid potato(Solanum tuberosum)into a seed crop is an innovative breeding method to accelerate genetic improvement.Seed propagation would allow hybrid production and mix superior alleles.However,...Re-domestication of diploid potato(Solanum tuberosum)into a seed crop is an innovative breeding method to accelerate genetic improvement.Seed propagation would allow hybrid production and mix superior alleles.However,almost all diploid potatoes in nature are self-incompatible(SI).Gametophytic self-incompatible(GSI)is a widespread SI in Solanaceae and is controlled by the S locus that contains a ribonuclease(S-RNase)and multiple F-box(SLFs);however,the genetic diversity of the S locus in potato is unclear.This study identified 21 S-RNase alleles involved in SI from 194 diploid potato accessions by large-scale transcriptome sequencing.The levels of amino acid similarity among different S-RNase proteins varied from 31.3 to 95.8%.S2 allele is the most widespread in 194 diploid potatoes and is mainly distributed in the S.tuberosum Group Phureja.Based on genomic annotation and expression analysis,we identified 12 potential functional SI male-determinant genes,S-locus F-box(SLFs),encoding F-box proteins in the S2 locus on a genomic region of approximately 13 Mb.Comparative genomics analysis showed that eight SLF genes are relatively conserved among four homozygous S locus.The Ka and Ks analysis suggested that S-RNase and intra-haplotypic SLF genes have co-evolved.These findings help select suitable pollinators,combine more hybrid combinations,and fully use heterosis to accelerate diploid potato breeding.展开更多
With the promotion of potatoes as a staple food,the challenge lies in integrating them into traditional staple grain-based diets.As the primary component of grains,starch plays a crucial role,and its interactions with...With the promotion of potatoes as a staple food,the challenge lies in integrating them into traditional staple grain-based diets.As the primary component of grains,starch plays a crucial role,and its interactions with other heterogeneous starches could significantly influence their functional properties.Therefore,this study aimed to explore the role of substitution ratio(SR,0–100%)of potato starch(PS)in the compatibility with wheat starch(WS)from the perspective of microstructure and physicochemical characteristics using the simplex-centroid method.Results of scaning electron microscopy(SEM)revealed the network structure in SR 30%of PS possessed the smallest size and the most compact gel structure.A higher SR of PS increased the solubility and swelling power of the blended WS and improved its freeze-thaw stability.Peak viscosity and gel hardness of the blended WS exhibited an increasing trend as the SR of PS increased.With the increasing SR of PS,the blended WS exhibited an increased tanδvalue with decreased viscous and elastic moduli.There is a non-additive effect between PS and WS,which should be responsible for their difference between experimental and theoretical values.These findings could provide a new direction for understanding the compatibility interactions between different starches,and provide a theoretical guidance for the development of PS-based foods with desirable properties.展开更多
Based on the environmental conditions for the growth and development of potatoes,the impact of climatic conditions on potato cultivation in Shangdu County was analyzed.Due to significant fluctuations in temperature du...Based on the environmental conditions for the growth and development of potatoes,the impact of climatic conditions on potato cultivation in Shangdu County was analyzed.Due to significant fluctuations in temperature during the seedling stage of potatoes,less precipitation,and uneven temporal and spatial distribution of precipitation,the yield of potatoes is unstable.Therefore,scientific planting suggestions and meteorological service countermeasures were proposed.展开更多
Eye depth is an important agronomic trait affecting tubers'appearance,quality,and processing suitability.Hence,cultivating varieties with uniform shapes and shallow eye depth are important goals for potato breedin...Eye depth is an important agronomic trait affecting tubers'appearance,quality,and processing suitability.Hence,cultivating varieties with uniform shapes and shallow eye depth are important goals for potato breeding.In this study,based on the primary mapping of the tuber eyedepth locus using a small primary-segregating population,a large secondary-segregating population with 2100 individuals was used to map the eye-depth locus further.A major quantitative trait locus for eye-depth on chromosome 10 was identified(designated qEyd10.1)using BSAseq and traditional QTL mapping methods.The qEyd10.1 could explain 55.0%of the eye depth phenotypic variation and was further narrowed to a 309.10 kb interval using recombinant analysis.To predict candidate genes,tissue sectioning and RNA-seq of the specific tuber tissues were performed.Genes encoding members of the peroxidase superfamily with likely roles in indole acetic acid regulation were considered the most promising candidates.These results will facilitate marker-assisted selection for the shallow-eye trait in potato breeding and provide a solid basis for eye-depth gene cloning and the analysis of tuber eye-depth regulatory mechanisms.展开更多
MicroRNAs(miRNAs) are a class of small endogenous non-coding RNAs that direct post-transcriptional gene silencing.In plants,numerous miRNAs have been demonstrated to be regulated under drought-induced stress.However,t...MicroRNAs(miRNAs) are a class of small endogenous non-coding RNAs that direct post-transcriptional gene silencing.In plants,numerous miRNAs have been demonstrated to be regulated under drought-induced stress.However,the role of miRNAs in drought regulation remains unclear in potato.In this work,the function of stu-miR159a was investigated in responding to drought stress in potato.Upon examination,StGAMyb-like1 was identified as the target gene for stu-miR159a.Overexpression of stu-miR159a(stu-miR159a OE plants) increased sensitivity to drought,interference with stu-miR159a activity by target mimics(stu-miR159a ST plants) resulted in drought resistance.During drought treatment,the target gene StGAMyb-like1 showed increased activation in stu-miR159a ST plants compared to non-transgenic plants.In contrast,drought stress induced weaker activation of the target gene in stu-miR159a OE plants.In stu-miR159a ST plants,the expression of critical genes in the anthocyanin biosynthesis pathway(StF3'5'H,StF3'H and StCHS2)was increased by decreasing stu-miR159a activity and simultaneously increasing that of StGAMyb-like1.Meanwhile,with drought treatment,stu-miR159a ST plants exhibited higher anthocyanin accumulation than non-transgenic ones,indicating enhanced antioxidant capacity and improved drought tolerance.The above data support that stu-miR159a is a negative regulator of drought stress and provide new insights into the stu-miR159a-mediated regulation of the anthocyanin biosynthesis pathway in controlling drought tolerance in potato.展开更多
[Objectives]This study was conducted to propose an improved YOLOv8s-based potato identification algorithm,in order to address issues such as low detection precision and high miss detection rate in potato identificatio...[Objectives]This study was conducted to propose an improved YOLOv8s-based potato identification algorithm,in order to address issues such as low detection precision and high miss detection rate in potato identification tasks.[Methods]The backbone network was replaced with InceptionNeXt,and the CBAM dual attention mechanism was introduced,to enhance the model s multi-scale feature extraction capability.[Results]The improved YOLOv8s algorithm achieved an identification precision of 94.55%,a recall of 85.34%,and an F1-score of 87.37%in potato identification.Compared with the original algorithm,it improved precision by 7.40%,recall by 2.71%,and F1-score by 2.56%.The average processing time per image was reduced by 0.12 s compared with the unimproved algorithm.The results of simulation tests showed a success rate of 98.20%in 2000 simulated identifcation tests.[Conclusions]This study provides a high-precision and robust solution for potato identification tasks.展开更多
[Objective]The paper was to investigate the effects of substituting corn pellets with potato residue on the growth performance,rumen fermentation indicators and economic benefits of Xinjiang Brown cattle.[Method]A tot...[Objective]The paper was to investigate the effects of substituting corn pellets with potato residue on the growth performance,rumen fermentation indicators and economic benefits of Xinjiang Brown cattle.[Method]A total of 80 Xinjiang Brown cattle,each 22 months old and with a similar body weight of(250±15)kg,were randomly assigned to four groups,with 20 cattle in each group,utilizing a single-factor experimental design.The total mixed diets for the experimental groups Ⅰ,Ⅱ,and Ⅲ were formulated by substituting corn pellets with 2.00%,4.00%,and 6.00%potato residue,respectively,while the diet in the control group was not substituted with potato residue.The duration of the test was 100 d,which comprised a pre-test period of 10 d and a formal test period of 90 d.During the test period,the average dry matter intake,average daily weight gain and feed-gain ratio were assessed at 30-day intervals,and body size indicators were measured on days 0 and 90.Rumen fluid samples were collected from the oral cavity on days 0,30,60,and 90 to assess rumen fermentation parameters.Additionally,jugular blood samples were obtained during the fasting period,and serum was separated for the analysis of total protein mass concentration,urea nitrogen,and glucose concentration.Furthermore,the economic benefits accrued during the test period were calculated.[Result]The dry matter intake in experimental group Ⅰ was significantly higher than that in the control group from days 31 to 60(P<0.05).In contrast,the differences in dry matter intake between experimental groups Ⅱ and Ⅲ and the control group were not statistically significant(P>0.05).From days 61 to 90,the dry matter intake in experimental group Ⅰ remained significantly higher than that in the other groups(P<0.05).Throughout the entire experimental period,the average daily weight gain observed in experimental group Ⅰ was significantly greater than that recorded in the other groups(P<0.05).Additionally,the total weight gain over the entire period was significantly higher than that of experimental group Ⅱ(P<0.05)and markedly higher than that of both the control group and experimental group Ⅲ(P<0.01).The feed-gain ratio in experimental group Ⅰ was significantly lower than that in experimental group Ⅱ(P<0.05).There were no statisticaly significant differences observed in body height,slope length,thoracic circumference,abdominal circumference,rumen pH,acetic acid,propionic acid,butyric acid,valeric acid,total volatile fatty acids,and ammoniacal nitrogen mass concentration among the groups(P>0.05).On the 90th day of the experiment,the serum urea nitrogen concentration in beef cattle from experimental groups Ⅰ and Ⅱ was significantly lower than that in the control group and experimental group Ⅲ(P<0.05).Additionally,the profit margins in experimental groups Ⅰ,Ⅱ,and Ⅲ were higher than those in the control group,and the profit margin in experimental group Ⅰ was the highest.[Conclusion]The substitution of corn pellets with potato residue has the potential to enhance the average daily weight gain and total weight gain throughout the entire period in beef cattle,while simultaneously reducing the feed-gain ratio.However,this substitution does not appear to have a significant impact on body size indicators,rumen fermentation parameters,or the concentrations of serum total protein and glucose in beef cattle.Furthermore,this approach may yield improved breeding profitability,with a recommended substitution ratio of 2.00%based on the conditions of this experiment.展开更多
The occurrence characteristics and impacts of agricultural meteorological disasters during the main growth period of potatoes in Ulanqab City were analyzed.According to the development needs of modern potato industry,...The occurrence characteristics and impacts of agricultural meteorological disasters during the main growth period of potatoes in Ulanqab City were analyzed.According to the development needs of modern potato industry,some countermeasures for meteorological services in the disaster prevention and mitigation of potatoes were proposed,such as strengthening intelligent and digital meteorological services,and building a full-chain meteorological service for the entire growth period of potatoes.The aim is to reduce the impact of disasters and increase the yield and quality of potatoes through intelligent and digital meteorological services.展开更多
Sweet potatoes are significant cash crops,however,their yield and quality are greatly compromised by viral diseases.In this study,the complete genomic sequences of two Sweet Potato Virus 2(SPV2)isolates from infected ...Sweet potatoes are significant cash crops,however,their yield and quality are greatly compromised by viral diseases.In this study,the complete genomic sequences of two Sweet Potato Virus 2(SPV2)isolates from infected sweet potato leaves in the Shandong(designated as SPV2-SDYT,GenBank No.PQ855660.1)and Jiangsu(designated as SPV2-JSXZ,GenBank No.PQ855661.1)provinces in China were obtained using 5′RACE and RT-PCR amplification.Consistency,phylogeny,codon usage bias,recombination,and selection pressure analyses were conducted using the SPV2-SDYT and SPV2-JSXZ genome sequences.The complete genome sequences of SPV2-SDYT and SPV2-JSXZ were 10561 nucleotides(nt)in length,with respective nucleotide and amino acid identities of 99.25%and 99.12%,respectively.Both isolates were closely related to the SPV2 isolate from China(SPV2-LN).In both SPV2-SDYT and SPV2-JSXZ,the identity of the P1 protein was the highest,whereas that of the P3 protein was the lowest.There were 26 codons with relatively synonymous codon usage(RSCU)values greater than 1 in SPV2-SDYT and 27 codons with RSCU values greater than 1 in SPV2-JSXZ.High-frequency codons in their genomes were predominantly found to end with A/U.Recombination analysis revealed no major recombination sites in either SPV2-SDYT or SPV2-JSXZ.Further selection pressure analysis showed that the non-synonymous substitution rate/synonymous substitution rate(dN/dS)value of all 10 SPV2 proteins was less than 1.This is the first report on the evolutionary relationships of the 17 known SPV2 isolates.Our findings lay the molecular groundwork for preventing and controlling SPV2 infection in root-tuber crops.These findings also contribute to our understanding of the spread and evolution of SPV2,its pathogenic mechanisms,and the development of antiviral strategies against it.展开更多
Vascular wilt caused by Fusarium oxysporum f.sp.batatas(Fob)is a devastating disease threatening global sweet potato production.To elucidate Fob’s pathogenicitymechanisms and informeffective control strategies,we gen...Vascular wilt caused by Fusarium oxysporum f.sp.batatas(Fob)is a devastating disease threatening global sweet potato production.To elucidate Fob’s pathogenicitymechanisms and informeffective control strategies,we generated a green fluorescent protein(GFP)-tagged Fob strain to track infection dynamics in sweet potato susceptible cultivar Xinzhonghua and resistant cultivar Xiangshu75-55,respectively.Through cytological observation,we found in the susceptible Xinzhonghua,Fob predominantly colonized stem villi,injured root growth points,and directly invaded vascular bundles through stemwounds.Spore germination peaked at 2-3 h post-inoculation(hpi),followed by cyclical mycelial expansion and sporulation within vascular tissues with sustaining infection.In contrast,the resistant Xiangshu75-55 exhibited strong suppression of Fob:spores rarely germinated in vascular bundles or on trichomes by 3 hpi,and mature hyphae were absent in stems at 24 hpi.Quantitative reverse transcription PCR(qRT-PCR)confirmed significantly higher Fob biomass in Xinzhonghua than in Xiangshu75-55 by 16 hpi.Additionally,transcriptional profiling revealed distinct pathogen-host interactions during the compatible and incompatible reactions.In Xinzhonghua,Fob virulence genes FobPGX1,FobICL1,FobCTF2,FobFUB5 and FobFUB6 were upregulated within 16 hpi.Conversely,host defense genes IbMAPKK9,IbWRKY61,IbWRKY75,IbSWEET10,IbBBX24 and IbPIF4 were activated in Xiangshu75-55 during the same period.This study provides spatiotemporal cytological and molecular insights into Fob pathogenicity and host resistance,offering a foundation for early disease detection and improved Fusarium wilt management in sweet potato.展开更多
文摘In this study,thyme essential oil(TEO)nanoemulsion(tPTNs)was constructed with transglutaminase(TGase)-modified potato protein,and its antibacterial activity and mechanism of action were evaluated and explored.Results indicated that tPTNs exhibited great antibacterial activity against both Staphylococcus aureus and Escherichia coli,with minimal inhibitory concentration(MIC)and minimum bactericidal concentration(MBC)of 2.5 and 5.0 mg/mL,respectively.Also,the antibacterial effects of tPTNs were concentration-dependent.We observed a significant decrease in the absolute value of the zeta potential,and significant increases in particle size,cell membrane hydrophobicity,conductivity,the release of metal ions,and the leakage of nucleic acid as the concentration of tPTNs increased from 0 mg/mL to MBC.Furthermore,sodium dodecyl sulphate-polyacrylamide gel electrophoresis(SDS-PAGE)demonstrated that protein synthesis was inhibited or even disrupted.Analysis by liquid chromatography-mass spectrometry(LC-MS)indicated that treatment with tPTNs caused significant changes in bacterial metabolites,1117 and 692 differential metabolites being found for S.aureus and E.coli,respectively.The differential metabolites were involved in nucleotide metabolism,amino acid metabolism,tricarboxylic acid cycle and other metabolic pathways.These findings provide valuable insights for the application of thyme essential oil as an efficient antibacterial agent and for the understanding of its mechanism of action.
基金supported by the Rural & Environment Science & Analytical Services (RESAS) Division of the Scottish Government through project JHI-B1-1the Biotechnology and Biological Sciences Research Council (BBSRC) through awards BB/ S015663/1+2 种基金BB/X009068/1Research Leaders 2025 fellowship funded by European Union’s Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant agreement no. 754380the Research/Scientific Computing teams at The James Hutton Institute and NIAB for providing computational resources and technical support for the “UK’s Crop Diversity Bioinformatics HPC” (BBSRC grant BB/ S019669/1)。
文摘An accurate assessment of host and pathogen gene expression during infection is critical for understanding the molecular aspects of host-pathogen interactions.Often,pathogen-derived transcripts are difficult to ascertain at early infection stages owing to the unfavourable transcript representation compared to the host genes.In this study,we compare two sequencing techniques,RNAseq and enrichment sequencing(RenSeq and PenSeq)of cDNA,to investigate gene expression patterns in the doubled monoploid potato(DM)infected with the late blight pathogen Phytophthora infestans.Our results reveal distinct advantages of cDNA RenSeq and PenSeq over traditional RNAseq in terms of target gene representation and transcriptional quantification at early infection stages.Throughout the infection time course,cDNA enrichment sequencing enables transcriptomic analyses for more targeted host and pathogen genes.For highly expressed genes that were sampled in parallel by both cDNA enrichment and RNAseq,a high level of concordance in expression profiles is observed,indicative of at least semi-quantitative gene expression representation following enrichment.
基金supported by grants from the National Natural Science Foundation of China(Grant Nos.32260085,31860064,31660501,31970609,32260718 and 31901870)the Key Projects of the Applied Basic Research Plan of Yunnan Province(Grant No.202301AS070082)+3 种基金the Start-up fund from Xishuangbanna Tropical Botanical Garden,the‘Top Talents Program in Science and Technology’from Yunnan Province,the Major Science and Technology Project in Yunnan Province(Grant Nos.202102AE090042 and 202202AE090036)the Young and Middle-Aged Academic and Technical Leaders Reserve Talent Program in Yunnan Province(Grant No.202205AC160076)China Postdoctoral Science Foundation(Grant No.2019M653849XB)the High-level Talents Introduction Plan of Yunnan Province-Young Talents Special Project。
文摘The formation of root system architecture(RSA)plays a crucial role in plant growth.OsDRO1 is known to have a function in controlling RSA in rice,however,the role of potato StDRO2,a homolog of rice OsDRO1,in root growth remains unclear.In this study,we obtained potato dro2 mutant lines by Clustered Regularly Interspaced Short Palindromic Repeats-CRISPR-Associated 9(CRISPR/Cas9)-mediated genome editing system.The mutant lines were generated from a splicing defect of the StDRO2 intron 1,which causes a nonsense mutation in StDRO2.Furthermore,the secondary structure of StDRO2 mRNA analyzed with RNAfold Web Server was altered in the dro2 mutant.Mutation of StDRO2 conveys potato adaptation through changing the RSA via alteration of auxin transport under drought stress.The potato dro2 lines showed higher plant height,longer root length,smaller root growth angle and increased tuber weight than the wild-type.The alteration of RSA was associated with a disturbance of IAA distribution in the dro2 mutant,and the levels of StPIN7 and StPIN10 detected by using real-time PCR were up-regulated in the roots of potato dro2 lines grown under drought stress.Moreover,the microRNAs(miRNAs)PmiREN024536 and PmiREN024486 targeted the StDRO2 gene,and auxin positively and negatively regulated the expression of StDRO2 and the miRNAs PmiREN024536 and PmiREN024486,respectively,in the potato roots.Our data shows that a regulatory network involving auxin,StDRO2,PmiREN024536 and PmiREN024486 can control RSA to convey potato fitness under drought stress.
文摘Increasing access to locally produced, safe, nutritious and affordable complementary foods is essential to combat micronutrient deficiencies in young children in low- and middle-income countries. Two formulations of sweets based on jujube, baobab fruit powder and sweet potato puree were produced, and their nutritional values and sensory properties such as taste, smell, color and acceptability were assessed. The formulation containing the most jujube powder, baobab fruit and sweet potato puree gave the best nutritional value. The sweets are rich in calcium (259.80 mg/100 g), magnesium (67.98 mg/100 g), potassium (782.04 mg/100 g), vitamin C (32.37 mg/100 g), iron (6.45 g mg/100 g) and zinc (0.97 mg/100 g). Sensory tests on the two formulations showed acceptability scores ranging from 81.26% to 84.58%, well above the minimum acceptable threshold. Candies with jujube, baobab fruit powder and sweet potato puree could be an alternative for preventing micronutrient deficiencies.
基金Supported by Special Fund for the Construction of China Agricultural Industry Research System(CARS-09-ES22).
文摘This study provides a comprehensive summary of the current development status of the potato industry in Liangshan Prefecture,and analyzes the primary factors that hinder the advancement of this industry,including a low degree of scale,a limited popularization rate of high-quality seeds,insufficient mechanization,a low level of commercialization,inadequate technological support,minimal integration between the secondary and tertiary industries,and an ineffective mechanism for connecting and benefiting farmers.Furthermore,it presents a problem-oriented approach that is grounded in the current climatic,resource,water,and soil conditions of Liangshan Prefecture,and proposes several pathways to promote the high-quality development of the potato industry.The strategies include:expanding coverage and increasing production volume as foundational steps to ensure food security;enhancing quality and efficiency as key drivers to stimulate agricultural advancement through scientific and technological innovation;focusing on the integration of the three industries to achieve industrial revitalization;implementing risk management measures as a preventive strategy to ensure industrial stability;establishing incentive policies to foster production enthusiasm;and ultimately assisting farmers in increasing their income to achieve the overarching goal of improving the livelihoods of the population.
文摘Sweet potato is one of the most important crops in Côte d’Ivoire. However, some constraints related to climate change limit its production. This study evaluated the agronomic and technological performances of eight varieties of orange-fleshed of sweet potato (Ipomoea batatas (L.) to identify the most promising ones. The results show three groups of varieties with different agronomic performances. Group 1 composed of Irene and Vita is characterized by low production of small and large tuberous roots, low number of productive plants and low yield. Group 2 consisting mainly of Kabode is characterized by high production and weight of large tuberous roots as well as high yield. Group 3, composed of Tacha-2 Ininda, Ejumula Gloria, TIB-440060, CIP-199062-1, Bela bela is characterized by high production of small and large tuberous roots, high number of productive plants and average yield. The TIB-440060 variety has a recovery rate of 100%. The Irene, Kabode, Vita, Kabode varieties were resistant to viral and fungal diseases. In terms of technological quality, the TIB-440060 and CIP-199062-1 varieties have the best organoleptic qualities. Given the agronomic performances of the Kabode, TIB-440060 and CIP-199062-1 varieties, could be selected as the elites varieties and distributed to producers.
基金supported by the National Natural Science Foundation of China(32372695 and 32488302)the Agricultural Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences(CAASZDRW202404)。
文摘Re-domestication of diploid potato(Solanum tuberosum)into a seed crop is an innovative breeding method to accelerate genetic improvement.Seed propagation would allow hybrid production and mix superior alleles.However,almost all diploid potatoes in nature are self-incompatible(SI).Gametophytic self-incompatible(GSI)is a widespread SI in Solanaceae and is controlled by the S locus that contains a ribonuclease(S-RNase)and multiple F-box(SLFs);however,the genetic diversity of the S locus in potato is unclear.This study identified 21 S-RNase alleles involved in SI from 194 diploid potato accessions by large-scale transcriptome sequencing.The levels of amino acid similarity among different S-RNase proteins varied from 31.3 to 95.8%.S2 allele is the most widespread in 194 diploid potatoes and is mainly distributed in the S.tuberosum Group Phureja.Based on genomic annotation and expression analysis,we identified 12 potential functional SI male-determinant genes,S-locus F-box(SLFs),encoding F-box proteins in the S2 locus on a genomic region of approximately 13 Mb.Comparative genomics analysis showed that eight SLF genes are relatively conserved among four homozygous S locus.The Ka and Ks analysis suggested that S-RNase and intra-haplotypic SLF genes have co-evolved.These findings help select suitable pollinators,combine more hybrid combinations,and fully use heterosis to accelerate diploid potato breeding.
基金Industrial innovation team of Chuzhou CityFengyang County“Fengxiang”talent team+3 种基金Huainan City Science and Technology Plan Project(2023076)Innovation and Entrepreneurship Training Program for College Students(202410879085)the Natural Science Research Projects of Anhui Universities(811904)the Excellent Research and Innovation Team of Anhui Province Universities in 2024(2024AH010007)。
文摘With the promotion of potatoes as a staple food,the challenge lies in integrating them into traditional staple grain-based diets.As the primary component of grains,starch plays a crucial role,and its interactions with other heterogeneous starches could significantly influence their functional properties.Therefore,this study aimed to explore the role of substitution ratio(SR,0–100%)of potato starch(PS)in the compatibility with wheat starch(WS)from the perspective of microstructure and physicochemical characteristics using the simplex-centroid method.Results of scaning electron microscopy(SEM)revealed the network structure in SR 30%of PS possessed the smallest size and the most compact gel structure.A higher SR of PS increased the solubility and swelling power of the blended WS and improved its freeze-thaw stability.Peak viscosity and gel hardness of the blended WS exhibited an increasing trend as the SR of PS increased.With the increasing SR of PS,the blended WS exhibited an increased tanδvalue with decreased viscous and elastic moduli.There is a non-additive effect between PS and WS,which should be responsible for their difference between experimental and theoretical values.These findings could provide a new direction for understanding the compatibility interactions between different starches,and provide a theoretical guidance for the development of PS-based foods with desirable properties.
文摘Based on the environmental conditions for the growth and development of potatoes,the impact of climatic conditions on potato cultivation in Shangdu County was analyzed.Due to significant fluctuations in temperature during the seedling stage of potatoes,less precipitation,and uneven temporal and spatial distribution of precipitation,the yield of potatoes is unstable.Therefore,scientific planting suggestions and meteorological service countermeasures were proposed.
基金funded by the National Natural Science Foundation of China(Grant No.31801421)the Chinese Academy of Agricultural Sciences Innovation Project(Grant No.CAAS-ASTIPIVFCAAS).
文摘Eye depth is an important agronomic trait affecting tubers'appearance,quality,and processing suitability.Hence,cultivating varieties with uniform shapes and shallow eye depth are important goals for potato breeding.In this study,based on the primary mapping of the tuber eyedepth locus using a small primary-segregating population,a large secondary-segregating population with 2100 individuals was used to map the eye-depth locus further.A major quantitative trait locus for eye-depth on chromosome 10 was identified(designated qEyd10.1)using BSAseq and traditional QTL mapping methods.The qEyd10.1 could explain 55.0%of the eye depth phenotypic variation and was further narrowed to a 309.10 kb interval using recombinant analysis.To predict candidate genes,tissue sectioning and RNA-seq of the specific tuber tissues were performed.Genes encoding members of the peroxidase superfamily with likely roles in indole acetic acid regulation were considered the most promising candidates.These results will facilitate marker-assisted selection for the shallow-eye trait in potato breeding and provide a solid basis for eye-depth gene cloning and the analysis of tuber eye-depth regulatory mechanisms.
基金supported by the Gansu Science and Technology Major Project(Grant No.22ZD6NA009)the Key Program of Natural Science Foundation of Gansu Province(Grant No.22JR5RA832)+1 种基金the Gansu Science and Technology Major Project(Grant No.23ZDNA006)National Natural Science Foundation of China(Grant No.31860399).
文摘MicroRNAs(miRNAs) are a class of small endogenous non-coding RNAs that direct post-transcriptional gene silencing.In plants,numerous miRNAs have been demonstrated to be regulated under drought-induced stress.However,the role of miRNAs in drought regulation remains unclear in potato.In this work,the function of stu-miR159a was investigated in responding to drought stress in potato.Upon examination,StGAMyb-like1 was identified as the target gene for stu-miR159a.Overexpression of stu-miR159a(stu-miR159a OE plants) increased sensitivity to drought,interference with stu-miR159a activity by target mimics(stu-miR159a ST plants) resulted in drought resistance.During drought treatment,the target gene StGAMyb-like1 showed increased activation in stu-miR159a ST plants compared to non-transgenic plants.In contrast,drought stress induced weaker activation of the target gene in stu-miR159a OE plants.In stu-miR159a ST plants,the expression of critical genes in the anthocyanin biosynthesis pathway(StF3'5'H,StF3'H and StCHS2)was increased by decreasing stu-miR159a activity and simultaneously increasing that of StGAMyb-like1.Meanwhile,with drought treatment,stu-miR159a ST plants exhibited higher anthocyanin accumulation than non-transgenic ones,indicating enhanced antioxidant capacity and improved drought tolerance.The above data support that stu-miR159a is a negative regulator of drought stress and provide new insights into the stu-miR159a-mediated regulation of the anthocyanin biosynthesis pathway in controlling drought tolerance in potato.
文摘[Objectives]This study was conducted to propose an improved YOLOv8s-based potato identification algorithm,in order to address issues such as low detection precision and high miss detection rate in potato identification tasks.[Methods]The backbone network was replaced with InceptionNeXt,and the CBAM dual attention mechanism was introduced,to enhance the model s multi-scale feature extraction capability.[Results]The improved YOLOv8s algorithm achieved an identification precision of 94.55%,a recall of 85.34%,and an F1-score of 87.37%in potato identification.Compared with the original algorithm,it improved precision by 7.40%,recall by 2.71%,and F1-score by 2.56%.The average processing time per image was reduced by 0.12 s compared with the unimproved algorithm.The results of simulation tests showed a success rate of 98.20%in 2000 simulated identifcation tests.[Conclusions]This study provides a high-precision and robust solution for potato identification tasks.
基金Supported by Natural Science Foundation Key Project of Xinjiang Uygur Autonomous Region(2022D01D10)China Agricultural Industry Research System of Xinjiang Uygur Autonomous Region in 2024(XJARS-12-05)Project of Key Laboratory of Animal Nutrition and Feed of Yili Prefecture.
文摘[Objective]The paper was to investigate the effects of substituting corn pellets with potato residue on the growth performance,rumen fermentation indicators and economic benefits of Xinjiang Brown cattle.[Method]A total of 80 Xinjiang Brown cattle,each 22 months old and with a similar body weight of(250±15)kg,were randomly assigned to four groups,with 20 cattle in each group,utilizing a single-factor experimental design.The total mixed diets for the experimental groups Ⅰ,Ⅱ,and Ⅲ were formulated by substituting corn pellets with 2.00%,4.00%,and 6.00%potato residue,respectively,while the diet in the control group was not substituted with potato residue.The duration of the test was 100 d,which comprised a pre-test period of 10 d and a formal test period of 90 d.During the test period,the average dry matter intake,average daily weight gain and feed-gain ratio were assessed at 30-day intervals,and body size indicators were measured on days 0 and 90.Rumen fluid samples were collected from the oral cavity on days 0,30,60,and 90 to assess rumen fermentation parameters.Additionally,jugular blood samples were obtained during the fasting period,and serum was separated for the analysis of total protein mass concentration,urea nitrogen,and glucose concentration.Furthermore,the economic benefits accrued during the test period were calculated.[Result]The dry matter intake in experimental group Ⅰ was significantly higher than that in the control group from days 31 to 60(P<0.05).In contrast,the differences in dry matter intake between experimental groups Ⅱ and Ⅲ and the control group were not statistically significant(P>0.05).From days 61 to 90,the dry matter intake in experimental group Ⅰ remained significantly higher than that in the other groups(P<0.05).Throughout the entire experimental period,the average daily weight gain observed in experimental group Ⅰ was significantly greater than that recorded in the other groups(P<0.05).Additionally,the total weight gain over the entire period was significantly higher than that of experimental group Ⅱ(P<0.05)and markedly higher than that of both the control group and experimental group Ⅲ(P<0.01).The feed-gain ratio in experimental group Ⅰ was significantly lower than that in experimental group Ⅱ(P<0.05).There were no statisticaly significant differences observed in body height,slope length,thoracic circumference,abdominal circumference,rumen pH,acetic acid,propionic acid,butyric acid,valeric acid,total volatile fatty acids,and ammoniacal nitrogen mass concentration among the groups(P>0.05).On the 90th day of the experiment,the serum urea nitrogen concentration in beef cattle from experimental groups Ⅰ and Ⅱ was significantly lower than that in the control group and experimental group Ⅲ(P<0.05).Additionally,the profit margins in experimental groups Ⅰ,Ⅱ,and Ⅲ were higher than those in the control group,and the profit margin in experimental group Ⅰ was the highest.[Conclusion]The substitution of corn pellets with potato residue has the potential to enhance the average daily weight gain and total weight gain throughout the entire period in beef cattle,while simultaneously reducing the feed-gain ratio.However,this substitution does not appear to have a significant impact on body size indicators,rumen fermentation parameters,or the concentrations of serum total protein and glucose in beef cattle.Furthermore,this approach may yield improved breeding profitability,with a recommended substitution ratio of 2.00%based on the conditions of this experiment.
文摘The occurrence characteristics and impacts of agricultural meteorological disasters during the main growth period of potatoes in Ulanqab City were analyzed.According to the development needs of modern potato industry,some countermeasures for meteorological services in the disaster prevention and mitigation of potatoes were proposed,such as strengthening intelligent and digital meteorological services,and building a full-chain meteorological service for the entire growth period of potatoes.The aim is to reduce the impact of disasters and increase the yield and quality of potatoes through intelligent and digital meteorological services.
基金Funding Statement:This work was funded by the National Natural Science Foundation of China(32100132)Shandong Province Natural Sciences Foundation of China(ZR2021QC008)+1 种基金Youth Innovation Team Program'in College of Shandong Province of China(2022KJ119)supported by Young Talent of Lifting Engineering for Science and Technology in Shandong,China(SDAST2024QT085).
文摘Sweet potatoes are significant cash crops,however,their yield and quality are greatly compromised by viral diseases.In this study,the complete genomic sequences of two Sweet Potato Virus 2(SPV2)isolates from infected sweet potato leaves in the Shandong(designated as SPV2-SDYT,GenBank No.PQ855660.1)and Jiangsu(designated as SPV2-JSXZ,GenBank No.PQ855661.1)provinces in China were obtained using 5′RACE and RT-PCR amplification.Consistency,phylogeny,codon usage bias,recombination,and selection pressure analyses were conducted using the SPV2-SDYT and SPV2-JSXZ genome sequences.The complete genome sequences of SPV2-SDYT and SPV2-JSXZ were 10561 nucleotides(nt)in length,with respective nucleotide and amino acid identities of 99.25%and 99.12%,respectively.Both isolates were closely related to the SPV2 isolate from China(SPV2-LN).In both SPV2-SDYT and SPV2-JSXZ,the identity of the P1 protein was the highest,whereas that of the P3 protein was the lowest.There were 26 codons with relatively synonymous codon usage(RSCU)values greater than 1 in SPV2-SDYT and 27 codons with RSCU values greater than 1 in SPV2-JSXZ.High-frequency codons in their genomes were predominantly found to end with A/U.Recombination analysis revealed no major recombination sites in either SPV2-SDYT or SPV2-JSXZ.Further selection pressure analysis showed that the non-synonymous substitution rate/synonymous substitution rate(dN/dS)value of all 10 SPV2 proteins was less than 1.This is the first report on the evolutionary relationships of the 17 known SPV2 isolates.Our findings lay the molecular groundwork for preventing and controlling SPV2 infection in root-tuber crops.These findings also contribute to our understanding of the spread and evolution of SPV2,its pathogenic mechanisms,and the development of antiviral strategies against it.
基金supported by the following grants,Earmarked fund for CARS-10-Sweet potato,High-quality development of agriculture“5511”collaborative innovation project(XTCXGC2021005)Natural Science Foundation of Fujian province(2021J01495)+1 种基金Basic Scientific Research Special Project for Fujian Provincial Public Research Institutes(2021R1031008)Science and Technology Innovation Team of Fujian Academy of Agricultural Sciences(CXTD2021012-1).
文摘Vascular wilt caused by Fusarium oxysporum f.sp.batatas(Fob)is a devastating disease threatening global sweet potato production.To elucidate Fob’s pathogenicitymechanisms and informeffective control strategies,we generated a green fluorescent protein(GFP)-tagged Fob strain to track infection dynamics in sweet potato susceptible cultivar Xinzhonghua and resistant cultivar Xiangshu75-55,respectively.Through cytological observation,we found in the susceptible Xinzhonghua,Fob predominantly colonized stem villi,injured root growth points,and directly invaded vascular bundles through stemwounds.Spore germination peaked at 2-3 h post-inoculation(hpi),followed by cyclical mycelial expansion and sporulation within vascular tissues with sustaining infection.In contrast,the resistant Xiangshu75-55 exhibited strong suppression of Fob:spores rarely germinated in vascular bundles or on trichomes by 3 hpi,and mature hyphae were absent in stems at 24 hpi.Quantitative reverse transcription PCR(qRT-PCR)confirmed significantly higher Fob biomass in Xinzhonghua than in Xiangshu75-55 by 16 hpi.Additionally,transcriptional profiling revealed distinct pathogen-host interactions during the compatible and incompatible reactions.In Xinzhonghua,Fob virulence genes FobPGX1,FobICL1,FobCTF2,FobFUB5 and FobFUB6 were upregulated within 16 hpi.Conversely,host defense genes IbMAPKK9,IbWRKY61,IbWRKY75,IbSWEET10,IbBBX24 and IbPIF4 were activated in Xiangshu75-55 during the same period.This study provides spatiotemporal cytological and molecular insights into Fob pathogenicity and host resistance,offering a foundation for early disease detection and improved Fusarium wilt management in sweet potato.
