This article concerns the application of wavelet techniques on molecular surfaces constituted of four-sided patches. The Polarizable Continuum Model, which is governed by the Poisson-Boltzmann equation, is treated by ...This article concerns the application of wavelet techniques on molecular surfaces constituted of four-sided patches. The Polarizable Continuum Model, which is governed by the Poisson-Boltzmann equation, is treated by means of boundary integral equations. The media inside and outside the molecular surface consist respectively of the solute and the solvent. For a given electrically charged molecule, the principal unknown is the electrostatic solvation energy when the permittivity is specified. The wavelet basis functions are constructed on the unit square which are subsequently mapped onto the patches that are assumed to be isotropically shaped and to admit similar surface areas. The initial transmission problem is recast as an integral equation in term of both the single and the double layers. Domain decomposition preconditioner serves as acceleration of the linear solver of the single layer which is badly conditioned.展开更多
Some new properties of polarizable Carnot group are given.By choosing a proper constant a nontrivial solution of a class of non-divergence Dirichlet problem on the polarizable Carnot group is constructed.Thus the mult...Some new properties of polarizable Carnot group are given.By choosing a proper constant a nontrivial solution of a class of non-divergence Dirichlet problem on the polarizable Carnot group is constructed.Thus the multi-solution property of corresponding non-homogeneous Dirichlet problem is proved and the best possible of LQ norm in the famous Alexandrov-Bakelman-Pucci type estimate is discussed.展开更多
Modeling structural and thermodynamic prop- erties of nucleic acids has long been a challenge in the development of force fields. Polarizable force fields are a new generation of potential functions to take charge red...Modeling structural and thermodynamic prop- erties of nucleic acids has long been a challenge in the development of force fields. Polarizable force fields are a new generation of potential functions to take charge redistribution and induced dipole into account, and have been proved to be reliable to model small molecules, polypeptides and proteins, but their use on nucleic acids is still rather limited. In this article, the interactions between nucleic acids and a small molecule or ion were modeled by AMOEBAbio09, a modern polarizable force field, and conventional non-polarizable AMBER99sb and CHARMM36 force fields. The resulting intermolecular interaction energies were compared with those calculated by ab initio quantum mechanics methods. Although the test is not sufficient to prove the reliability of the polarizable force field, the results at least validate its capability in modeling energetics of static configurations, which is one basic component in force field parameterization.展开更多
The functionalities of hydrogel-based smart materials are highly related to the electrostatic interactions and molecular polarization associated with the polymer networks and encapsulated water droplets,and therefore ...The functionalities of hydrogel-based smart materials are highly related to the electrostatic interactions and molecular polarization associated with the polymer networks and encapsulated water droplets,and therefore the dielectric responses of the polarizable molecules in the polymer,water,and polymer-water interfaces are particularly attractive,where the properties of polymer-water interfacial molecules remain elusive.Different from extensive dielectric relaxation spectroscopy studies on polymer hydrogel solutions,in this work we investigate the dielectric response of chitosan hydrogels below the water solidifying point(ice-hydrogels)so that the contribution of chitosan-water interfacial molecules can be isolated.It is revealed that the chitosan-water interfacial polarizable molecules have slow dielectric relaxation but large polarization compared with the chitosan chains and water molecules,and the dielectric relaxations beyond~10^(4)Hz are substantially weak.The thermal activation energy of the dielectric relaxation for these interfacial polarizable molecules can be as large as 0.93 eV,i.e.89.73 kJ/mol.The present work provides a platform for characterizing the polymer-water electrostatic interactions and interfacial polarizable molecules,informative to understand the microstructure-property relationships of chitosan-based hydrogel materials.展开更多
The hydrolysis process of Ru（III） complex （HL）[trans-RuC14L（dmso-S）] （L=l-methyl-l,2,4- triazole and dmso-S=S-dimethyl sulfoxide） （1）, a potential antitumor complex similar to the well-known antitumor agent ...The hydrolysis process of Ru（III） complex （HL）[trans-RuC14L（dmso-S）] （L=l-methyl-l,2,4- triazole and dmso-S=S-dimethyl sulfoxide） （1）, a potential antitumor complex similar to the well-known antitumor agent （Him）[trans-RuC14 （dmso-S）（im）] （NAMI-A, im=imidazole）, was investigated using density functional theory combined with the conductor-like polarizable continuum model approach. Tile structural characteristics and the detailed energy profiles for the hydrolysis processes of this complex were obtained. For the first hydrolysis step, complex 1 has slightly higher barrier energies than the reported anticancer drug NAMI-A, and the result is in accordance with the experimental evidence indicating larger half-life for complex 1. For the second hydrolysis step, the formation of cis-diaqua species is thermodynamic preferred to that of trans isomers. In addition, on the basis of the analysis of electronic characteristics of species in the hydrolysis process, the trend in nucleophilic attack abilities of hydrolysis products by pertinent biomolecules is revealed and predicted.展开更多
Density functional theory calculations were performed to study the structures and relative stability of the gadolinium complexes, Gd（H2O）n^3＋ （n=8,9）, in vacuo and in aqueous solution. The polarizable continuum m...Density functional theory calculations were performed to study the structures and relative stability of the gadolinium complexes, Gd（H2O）n^3＋ （n=8,9）, in vacuo and in aqueous solution. The polarizable continuum model with various radii for the solute cavity was used to study the relative stability in aqueous solution. The calculated molecular geometries for n=8 and 9 obtained in vacuo are consistent with those observed in experiments. It was found that while the nona-aqua complex is favored in the gas phase, in aqueous solution the octa-aqua conformation is preferred. This result, independent of the types of cavities employed, is in agreement with the experimental observation. The reliability of the present calculation was also addressed by comparing the calculated and experimental free energy of hydration, which revealed that the UA0, UAHF, and UAKS cavities are most appropriate when only the first solvation shell is treated explicitly.展开更多
Electronic polarization has an important impact on the site energies of charge carriers that play a key role in determining the charge transport in organic semiconductors.Dipolar molecules have strong intermolecular i...Electronic polarization has an important impact on the site energies of charge carriers that play a key role in determining the charge transport in organic semiconductors.Dipolar molecules have strong intermolecular interactions and widespread applications in organic optoelectronics.Howeve r,compared with nonpolar organic semiconductors,electronic polarization for dipolar systems has been rarely studied.Here,taking 1,2,3,4-tetrafluoro-6,7-dimethylnaphthalene as representative,we have calculated the electronic polarization energies of dipolar organic molecular crystals by means of a polarizable forcefield method.Surprisingly,our results point to that the polarization energies for this dipolar system are similar to those of nonpolar systems.In addition,theπ-πstack contributes only about 30%~40%to the total polarization energy,thus the polarization effects along the three dimensions should be treated equally even for the one-dimensional stacking crystals.展开更多
Solvent effects on 2,4-dinitrotoluene（2,4-DNT） molecule in different solvents（toluene, ethanol, and water） were studied via DFT PCM method at B3LYP/6-311＋G（d,p） level. The influences of these solvents on the mo...Solvent effects on 2,4-dinitrotoluene（2,4-DNT） molecule in different solvents（toluene, ethanol, and water） were studied via DFT PCM method at B3LYP/6-311＋G（d,p） level. The influences of these solvents on the molecular structure, vibrational spectra, charge distribution, and dipole moment were studied as well. The results show that PCM computations are successful in describing the vibrational spectra of 2,4-DNT molecules in these solutions and the solvent effects on the low frequency vibrational spectra are weak.展开更多
Chrornophore structures inspired by natural green fluorescent protein （GFP） play an im- portant role in the field of bio-irnaging. In this work, photochemical properties of a new class of GFP-like chromophores are i...Chrornophore structures inspired by natural green fluorescent protein （GFP） play an im- portant role in the field of bio-irnaging. In this work, photochemical properties of a new class of GFP-like chromophores are investigated using computational approaches. Thermo- dynamically stable isomers are identified in vacuum and in solvent. Spectral Stokes shifts are computed and compared to experiments. An inverted solvatochromic shift between absorption and emission emerging in this new class of GFP-like chromophores is observed, and attributed to the stabilized charge transfer and inhibited rotational structural reorganization in solvent.展开更多
The polarizability（α） and second hyperpolarizability（γ） were systemically investigated for singlet diradical complex involving X（X=B,Al,Ga） atom.The results show that both the α and γ can be effectively tune...The polarizability（α） and second hyperpolarizability（γ） were systemically investigated for singlet diradical complex involving X（X=B,Al,Ga） atom.The results show that both the α and γ can be effectively tuned by varying the distance R（between compound A and a water molecule） and acceptor atom X.The lone pair of electrons from the O atom of the water molecule entered into the vacant p orbital of atom X,which increased the diradical character and led to the increase of the α and γ values.Furthermore,the polarizable continuum model（PCM） was used to test the effects of H2O and CCl4 solvents on the α and γ values.Both the α and γ values of the studied diradical complex 1a（1b,1c） in H2O and CCl4 were uniformly enhanced.And the solvent effects of H2O on either α or γ were larger than those of CCl4.展开更多
Self-assembly of octadecyl mercaptan on gold was investigated by cyclic voltammetry(CV) and electrochemical impedance spectroscopy (EIS). Results of CV experiments show thatthere are no structUral defects exposed dire...Self-assembly of octadecyl mercaptan on gold was investigated by cyclic voltammetry(CV) and electrochemical impedance spectroscopy (EIS). Results of CV experiments show thatthere are no structUral defects exposed directly to the redox couple in solution, but EISexperiments indicate that collapsed sites exist in the monolayer. A method to estimate the degree ofdisorder in the Au/thiol monolayer surface is proposed by using admittance plane plot.展开更多
The detailed mechanism of CuI-catalyzed C-O intramolecular coupling reaction of 2-（2-bromo-4-fluoro-phenyl）-l- cyclohexen-1-yl trifluoromethane-sulfonate was studied with the density functional theory （DFT）. The g...The detailed mechanism of CuI-catalyzed C-O intramolecular coupling reaction of 2-（2-bromo-4-fluoro-phenyl）-l- cyclohexen-1-yl trifluoromethane-sulfonate was studied with the density functional theory （DFT）. The geometries of the reactants, transition states, intermediates and products were optimized at the B3LYP/6-31 ＋G＊ level. Meanwhile, the single point energy of species involved in gas and solvent at B3LYP/6-31 I＋G＊ level was individually investigated. Polarizable continuum models （PCM） were applied to the dioxane and water solutions at the same level, respectively. Results show that the rate-limiting step, M3→TS3, does not change in different solutions. However, the activation energy in a dioxane solution is lower than that in water, which explains the previous experimental results. Compared with the non-catalyzed reaction process, the activation energy of the rate- limiting step is reduced by 56.53 kJ mo1-1 in gas and 44.84 kJ mol-l in solvent, demonstrating a high catalytic efficiency of CuI.展开更多
With the insight provided by a balance equation of electromagnetic momentum, we compare the force on a dielectric slab inside a capacitor with the force on a magnetizable rod inside a solenoid. We conclude that these ...With the insight provided by a balance equation of electromagnetic momentum, we compare the force on a dielectric slab inside a capacitor with the force on a magnetizable rod inside a solenoid. We conclude that these forces are not exactly analogous, as usually thought. We present a device that is a proper analogy of the case of a dielectric slab inside a capacitor. Our analysis shows the significance of the electrostatic and magnetostatic pressures to the understanding of these effects and shows the conceptual differences between both cases.展开更多
The interaction potential index IPI（X） of 16 Br, C1, I, NO2, CN, CHO, COOH, CH3, CH： kinds of substituents X （X---OH, SH, NH2, ：CH2, C-CH, Ph, COCH3, COOCH3） were proposed, which are derived from the experimenta...The interaction potential index IPI（X） of 16 Br, C1, I, NO2, CN, CHO, COOH, CH3, CH： kinds of substituents X （X---OH, SH, NH2, ：CH2, C-CH, Ph, COCH3, COOCH3） were proposed, which are derived from the experimental enthalpies of formation △fHФ （g） values of monosubstituted straight-chain alkanes. Based on the IPI（X） and polarizability effect index, a simple and effective model was constructed to estimate the △fHФ （g） values of monosubstituted alkanes RX （including the branched derivatives）. The present model takes into account not only the contributions of the alkyl R and the substituent X, but also the contribution of the interaction between R and X. Its stability and prediction ability was confirmed by the results of leave-one-out method. Compared with previous reported studies, the obtained equation can be used to estimate enthalpies of formation for much more kinds of monosubstituted alkanes with less parameters. Thus, it is recommended for the calculation of the △fHФ（g） for the RX.展开更多
The static electric dipole polarizabilities of the ground state and n ≤ 3 excited states of a lithium atom embedded in a weekly coupled plasma environment are investigated as a function of the plasma screening radium...The static electric dipole polarizabilities of the ground state and n ≤ 3 excited states of a lithium atom embedded in a weekly coupled plasma environment are investigated as a function of the plasma screening radium. The plasma screening of the Coulomb interaction is described by the Debye-Hiickel potential and the interaction between the valence electron and the atomic core is described by a model potential. The electron energies and wave functions for both the bound and continuum states are calculated by solving the SchrSdinger equation numerically using the symplectic integrator. The oscillator strengths, partial-wave, and total static dipole polarizabilities of the ground state and n ≤ 3 excited states of the lithium atom are calculated. Comparison of present results with those of other authors, when available, is made. The results for the 2s ground state demonstrated that the oscillator strengths and the static dipole polarizabilities from np orbitals do not always increase or decrease with the plasma screening effect increasing, unlike that for hydrogen-like ions, especially for 2s→3p transition there is a zero value for both the oscillator strength and the static dipole polarizability for screening length D = 10.3106a0, which is associated with the Cooper minima.展开更多
Simple models are proposed for the calculation of refractive index n and electronic polarizability α of AⅠBⅢC2Ⅵ and AⅡBⅣC2Ⅴ compounds of groups of chalcopyrite semiconductors from their energy gap data. The val...Simple models are proposed for the calculation of refractive index n and electronic polarizability α of AⅠBⅢC2Ⅵ and AⅡBⅣC2Ⅴ compounds of groups of chalcopyrite semiconductors from their energy gap data. The values family and 12 compounds of AⅡBⅣC2Ⅴ family are calculated for the work. The proposed models are applicable for the whole range of energy gap materials. The calculated values are compared with the available experimental and reported values. A fairly good agreement between them is obtained.展开更多
The time-frequency domain electromagnetic(TFEM)sounding technique can directly detect oil and gas characteristics through anomalies in resistivity and polarizability.In recent years,it has made some breakthroughs in h...The time-frequency domain electromagnetic(TFEM)sounding technique can directly detect oil and gas characteristics through anomalies in resistivity and polarizability.In recent years,it has made some breakthroughs in hydrocarbon detection.TFEM was applied to predict the petroliferous property of the Ili Basin.In accordance with the geological structure characteristics of the study area,a two-dimensional layered medium model was constructed and forward modeling was performed.We used the forward-modeling results to guide fi eld construction and ensure the quality of the fi eld data collection.We used the model inversion results to identify and distinguish the resolution of the geoelectric information and provide a reliable basis for data processing.On the basis of our results,key technologies such as 2D resistivity tomography imaging inversion and polarimetric constrained inversion were developed,and we obtained abundant geological and geophysical information.The characteristics of the TFEM anomalies of the hydrocarbon reservoirs in the Ili Basin were summarized through an analysis of the electrical logging data in the study area.Moreover,the oil-gas properties of the Permian and Triassic layers were predicted,and the next favorable exploration targets were optimized.展开更多
According to density functional theory, we investigate the effects of BF3, BF4, BCI3, A1F3, AICI3, A1Br3, 13eF3, GaF3, GaC13, GaBr3, NO3, BS2, BSO, BO2, F2, PFs, PC15, and ASF5 molecules on the geometric, electronic, ...According to density functional theory, we investigate the effects of BF3, BF4, BCI3, A1F3, AICI3, A1Br3, 13eF3, GaF3, GaC13, GaBr3, NO3, BS2, BSO, BO2, F2, PFs, PC15, and ASF5 molecules on the geometric, electronic, linear, and nonlinear optical properties of an Mg12012 nanocage. The thermodynamic stability and feasibility of the adsorption process are investigated by analyzing the free energy. It is shown that the adsorptions of almost all molecules on the Mg12OI2 surface are exothermic. The calculations of the polarizability of these nanoclusters show that among the studied molecules, BeF3 has the largest influence on the polarizability value （a≈315 a.u., the unit a.u. is short for atomic unit）. The static first hyperpolarizability （β0） value is increased in the presence of these superhalogens. This increase is greatest for BeF3 and BF4 of which the highest value of the first hyperpolarizability （βO≈ 5775 a.u.） is related to a BeF3_c（e@Mgl2Ol2） nanocluster. The adsorption position is a key to estimating the value of increasing the first hyperpolarizability.展开更多
The analytical transfer matrix method （ATMM） is applied to calculating the critical radius τc and the dipole polarizability αd in two confined systems： the hydrogen atom and the Hulthēén potential. We find ...The analytical transfer matrix method （ATMM） is applied to calculating the critical radius τc and the dipole polarizability αd in two confined systems： the hydrogen atom and the Hulthēén potential. We find that there exists a linear relation between τe^1/2 and the quantum number nτ for a fixed angular quantum number l, moreover, the three bounds of αd（αd^K,αd^B,αd^U） satisfy an inequality：αd^K≤αd^B≤αd^U,A comparison betwen the ATMM,the exact numerical analysis, and the variational wavefunctions shows that our method works very well in the systems.展开更多
A semi-empirical atomic structure model method is developed in the framework of a relativistic case. This method starts from Dirac-Fock calculations using B-spline basis set. The core-valence electron correction is th...A semi-empirical atomic structure model method is developed in the framework of a relativistic case. This method starts from Dirac-Fock calculations using B-spline basis set. The core-valence electron correction is then treated in a semiempirical core polarization potential. As an application, the polarization properties of alkali metal atoms, including the static polarizabilities and long-range two-body dispersion coefficients, have been calculated. Our results are in good agreement with the results obtained from ab initio relativistic many-body perturbation method and the available experimental measurements.展开更多
文摘This article concerns the application of wavelet techniques on molecular surfaces constituted of four-sided patches. The Polarizable Continuum Model, which is governed by the Poisson-Boltzmann equation, is treated by means of boundary integral equations. The media inside and outside the molecular surface consist respectively of the solute and the solvent. For a given electrically charged molecule, the principal unknown is the electrostatic solvation energy when the permittivity is specified. The wavelet basis functions are constructed on the unit square which are subsequently mapped onto the patches that are assumed to be isotropically shaped and to admit similar surface areas. The initial transmission problem is recast as an integral equation in term of both the single and the double layers. Domain decomposition preconditioner serves as acceleration of the linear solver of the single layer which is badly conditioned.
文摘Some new properties of polarizable Carnot group are given.By choosing a proper constant a nontrivial solution of a class of non-divergence Dirichlet problem on the polarizable Carnot group is constructed.Thus the multi-solution property of corresponding non-homogeneous Dirichlet problem is proved and the best possible of LQ norm in the famous Alexandrov-Bakelman-Pucci type estimate is discussed.
基金This work was financially supported by the National Natural Science Foundation of China （Grant Nos. 21573217, 31370714, and 91430110）.
文摘Modeling structural and thermodynamic prop- erties of nucleic acids has long been a challenge in the development of force fields. Polarizable force fields are a new generation of potential functions to take charge redistribution and induced dipole into account, and have been proved to be reliable to model small molecules, polypeptides and proteins, but their use on nucleic acids is still rather limited. In this article, the interactions between nucleic acids and a small molecule or ion were modeled by AMOEBAbio09, a modern polarizable force field, and conventional non-polarizable AMBER99sb and CHARMM36 force fields. The resulting intermolecular interaction energies were compared with those calculated by ab initio quantum mechanics methods. Although the test is not sufficient to prove the reliability of the polarizable force field, the results at least validate its capability in modeling energetics of static configurations, which is one basic component in force field parameterization.
基金This work was financially supported from the National Key Research Program of China(Grant Nos.2016YFA0300101 and 2015CB654602)the National Natural Science Foundation of China(Grant Nos.51431006 and 51721001).
文摘The functionalities of hydrogel-based smart materials are highly related to the electrostatic interactions and molecular polarization associated with the polymer networks and encapsulated water droplets,and therefore the dielectric responses of the polarizable molecules in the polymer,water,and polymer-water interfaces are particularly attractive,where the properties of polymer-water interfacial molecules remain elusive.Different from extensive dielectric relaxation spectroscopy studies on polymer hydrogel solutions,in this work we investigate the dielectric response of chitosan hydrogels below the water solidifying point(ice-hydrogels)so that the contribution of chitosan-water interfacial molecules can be isolated.It is revealed that the chitosan-water interfacial polarizable molecules have slow dielectric relaxation but large polarization compared with the chitosan chains and water molecules,and the dielectric relaxations beyond~10^(4)Hz are substantially weak.The thermal activation energy of the dielectric relaxation for these interfacial polarizable molecules can be as large as 0.93 eV,i.e.89.73 kJ/mol.The present work provides a platform for characterizing the polymer-water electrostatic interactions and interfacial polarizable molecules,informative to understand the microstructure-property relationships of chitosan-based hydrogel materials.
基金This work was supported by the National Natural Science Foundation of China （No.20903027）, the Natural Science Foundation of Guangdong Province （No.9452402301001941）, and the Doctor Startup Fund of Guangdong Medical College （No.XB0802 and No.XB0804）.
文摘The hydrolysis process of Ru（III） complex （HL）[trans-RuC14L（dmso-S）] （L=l-methyl-l,2,4- triazole and dmso-S=S-dimethyl sulfoxide） （1）, a potential antitumor complex similar to the well-known antitumor agent （Him）[trans-RuC14 （dmso-S）（im）] （NAMI-A, im=imidazole）, was investigated using density functional theory combined with the conductor-like polarizable continuum model approach. Tile structural characteristics and the detailed energy profiles for the hydrolysis processes of this complex were obtained. For the first hydrolysis step, complex 1 has slightly higher barrier energies than the reported anticancer drug NAMI-A, and the result is in accordance with the experimental evidence indicating larger half-life for complex 1. For the second hydrolysis step, the formation of cis-diaqua species is thermodynamic preferred to that of trans isomers. In addition, on the basis of the analysis of electronic characteristics of species in the hydrolysis process, the trend in nucleophilic attack abilities of hydrolysis products by pertinent biomolecules is revealed and predicted.
基金ACKNOWLEDGMENTS This work was supported by the National Natural Science Foundation of China （No.10804001, No.10674002, and No.20773024）, the National High Technology Research and Development Program of China （No.2006AA09Z243-3）, and the Program for Innovative Research Team in Anhui Normal University of China.
文摘Density functional theory calculations were performed to study the structures and relative stability of the gadolinium complexes, Gd（H2O）n^3＋ （n=8,9）, in vacuo and in aqueous solution. The polarizable continuum model with various radii for the solute cavity was used to study the relative stability in aqueous solution. The calculated molecular geometries for n=8 and 9 obtained in vacuo are consistent with those observed in experiments. It was found that while the nona-aqua complex is favored in the gas phase, in aqueous solution the octa-aqua conformation is preferred. This result, independent of the types of cavities employed, is in agreement with the experimental observation. The reliability of the present calculation was also addressed by comparing the calculated and experimental free energy of hydration, which revealed that the UA0, UAHF, and UAKS cavities are most appropriate when only the first solvation shell is treated explicitly.
基金support from the Ministry of Science and Technology of China(No.2017YFA0204502)the Strategic Priority Research Program of the Chinese Academy of Sciences(No.XDB12020200)。
文摘Electronic polarization has an important impact on the site energies of charge carriers that play a key role in determining the charge transport in organic semiconductors.Dipolar molecules have strong intermolecular interactions and widespread applications in organic optoelectronics.Howeve r,compared with nonpolar organic semiconductors,electronic polarization for dipolar systems has been rarely studied.Here,taking 1,2,3,4-tetrafluoro-6,7-dimethylnaphthalene as representative,we have calculated the electronic polarization energies of dipolar organic molecular crystals by means of a polarizable forcefield method.Surprisingly,our results point to that the polarization energies for this dipolar system are similar to those of nonpolar systems.In addition,theπ-πstack contributes only about 30%~40%to the total polarization energy,thus the polarization effects along the three dimensions should be treated equally even for the one-dimensional stacking crystals.
基金Supported by the National Natural Science Foundation of China(No.10534010)
文摘Solvent effects on 2,4-dinitrotoluene（2,4-DNT） molecule in different solvents（toluene, ethanol, and water） were studied via DFT PCM method at B3LYP/6-311＋G（d,p） level. The influences of these solvents on the molecular structure, vibrational spectra, charge distribution, and dipole moment were studied as well. The results show that PCM computations are successful in describing the vibrational spectra of 2,4-DNT molecules in these solutions and the solvent effects on the low frequency vibrational spectra are weak.
基金supported by US National Science Foundation(CHE-1565520) to X. Lifunded by the STF at the University of Washingtonthe National Science Foundation (MRI-1624430).
文摘Chrornophore structures inspired by natural green fluorescent protein （GFP） play an im- portant role in the field of bio-irnaging. In this work, photochemical properties of a new class of GFP-like chromophores are investigated using computational approaches. Thermo- dynamically stable isomers are identified in vacuum and in solvent. Spectral Stokes shifts are computed and compared to experiments. An inverted solvatochromic shift between absorption and emission emerging in this new class of GFP-like chromophores is observed, and attributed to the stabilized charge transfer and inhibited rotational structural reorganization in solvent.
基金Supported by the National Natural Science Foundation of China(No.20873017)the Natural Science Foundation of Jilin Province,China(No.20101154)
文摘The polarizability（α） and second hyperpolarizability（γ） were systemically investigated for singlet diradical complex involving X（X=B,Al,Ga） atom.The results show that both the α and γ can be effectively tuned by varying the distance R（between compound A and a water molecule） and acceptor atom X.The lone pair of electrons from the O atom of the water molecule entered into the vacant p orbital of atom X,which increased the diradical character and led to the increase of the α and γ values.Furthermore,the polarizable continuum model（PCM） was used to test the effects of H2O and CCl4 solvents on the α and γ values.Both the α and γ values of the studied diradical complex 1a（1b,1c） in H2O and CCl4 were uniformly enhanced.And the solvent effects of H2O on either α or γ were larger than those of CCl4.
文摘Self-assembly of octadecyl mercaptan on gold was investigated by cyclic voltammetry(CV) and electrochemical impedance spectroscopy (EIS). Results of CV experiments show thatthere are no structUral defects exposed directly to the redox couple in solution, but EISexperiments indicate that collapsed sites exist in the monolayer. A method to estimate the degree ofdisorder in the Au/thiol monolayer surface is proposed by using admittance plane plot.
文摘The detailed mechanism of CuI-catalyzed C-O intramolecular coupling reaction of 2-（2-bromo-4-fluoro-phenyl）-l- cyclohexen-1-yl trifluoromethane-sulfonate was studied with the density functional theory （DFT）. The geometries of the reactants, transition states, intermediates and products were optimized at the B3LYP/6-31 ＋G＊ level. Meanwhile, the single point energy of species involved in gas and solvent at B3LYP/6-31 I＋G＊ level was individually investigated. Polarizable continuum models （PCM） were applied to the dioxane and water solutions at the same level, respectively. Results show that the rate-limiting step, M3→TS3, does not change in different solutions. However, the activation energy in a dioxane solution is lower than that in water, which explains the previous experimental results. Compared with the non-catalyzed reaction process, the activation energy of the rate- limiting step is reduced by 56.53 kJ mo1-1 in gas and 44.84 kJ mol-l in solvent, demonstrating a high catalytic efficiency of CuI.
文摘With the insight provided by a balance equation of electromagnetic momentum, we compare the force on a dielectric slab inside a capacitor with the force on a magnetizable rod inside a solenoid. We conclude that these forces are not exactly analogous, as usually thought. We present a device that is a proper analogy of the case of a dielectric slab inside a capacitor. Our analysis shows the significance of the electrostatic and magnetostatic pressures to the understanding of these effects and shows the conceptual differences between both cases.
基金This work was supported by the National Natural Science Foundation of China （No.21072053 and No.20772028） and the Scientific Research Fund of Hunan Provincial Education Department （No.10K025 and No.09C386）.
文摘The interaction potential index IPI（X） of 16 Br, C1, I, NO2, CN, CHO, COOH, CH3, CH： kinds of substituents X （X---OH, SH, NH2, ：CH2, C-CH, Ph, COCH3, COOCH3） were proposed, which are derived from the experimental enthalpies of formation △fHФ （g） values of monosubstituted straight-chain alkanes. Based on the IPI（X） and polarizability effect index, a simple and effective model was constructed to estimate the △fHФ （g） values of monosubstituted alkanes RX （including the branched derivatives）. The present model takes into account not only the contributions of the alkyl R and the substituent X, but also the contribution of the interaction between R and X. Its stability and prediction ability was confirmed by the results of leave-one-out method. Compared with previous reported studies, the obtained equation can be used to estimate enthalpies of formation for much more kinds of monosubstituted alkanes with less parameters. Thus, it is recommended for the calculation of the △fHФ（g） for the RX.
基金Project supported by the National Natural Science Foundation of China(Grant Nos.11005049,10979007,and 10974021)
文摘The static electric dipole polarizabilities of the ground state and n ≤ 3 excited states of a lithium atom embedded in a weekly coupled plasma environment are investigated as a function of the plasma screening radium. The plasma screening of the Coulomb interaction is described by the Debye-Hiickel potential and the interaction between the valence electron and the atomic core is described by a model potential. The electron energies and wave functions for both the bound and continuum states are calculated by solving the SchrSdinger equation numerically using the symplectic integrator. The oscillator strengths, partial-wave, and total static dipole polarizabilities of the ground state and n ≤ 3 excited states of the lithium atom are calculated. Comparison of present results with those of other authors, when available, is made. The results for the 2s ground state demonstrated that the oscillator strengths and the static dipole polarizabilities from np orbitals do not always increase or decrease with the plasma screening effect increasing, unlike that for hydrogen-like ions, especially for 2s→3p transition there is a zero value for both the oscillator strength and the static dipole polarizability for screening length D = 10.3106a0, which is associated with the Cooper minima.
文摘Simple models are proposed for the calculation of refractive index n and electronic polarizability α of AⅠBⅢC2Ⅵ and AⅡBⅣC2Ⅴ compounds of groups of chalcopyrite semiconductors from their energy gap data. The values family and 12 compounds of AⅡBⅣC2Ⅴ family are calculated for the work. The proposed models are applicable for the whole range of energy gap materials. The calculated values are compared with the available experimental and reported values. A fairly good agreement between them is obtained.
基金This work was supported by the Geology and Mineral Resources Investigation and Evaluation Program(No.12120115006601 and No.DD20160181)the National key Research and Development projects(No.2016YFC060110204 and No.2016YFC060110305).
文摘The time-frequency domain electromagnetic(TFEM)sounding technique can directly detect oil and gas characteristics through anomalies in resistivity and polarizability.In recent years,it has made some breakthroughs in hydrocarbon detection.TFEM was applied to predict the petroliferous property of the Ili Basin.In accordance with the geological structure characteristics of the study area,a two-dimensional layered medium model was constructed and forward modeling was performed.We used the forward-modeling results to guide fi eld construction and ensure the quality of the fi eld data collection.We used the model inversion results to identify and distinguish the resolution of the geoelectric information and provide a reliable basis for data processing.On the basis of our results,key technologies such as 2D resistivity tomography imaging inversion and polarimetric constrained inversion were developed,and we obtained abundant geological and geophysical information.The characteristics of the TFEM anomalies of the hydrocarbon reservoirs in the Ili Basin were summarized through an analysis of the electrical logging data in the study area.Moreover,the oil-gas properties of the Permian and Triassic layers were predicted,and the next favorable exploration targets were optimized.
文摘According to density functional theory, we investigate the effects of BF3, BF4, BCI3, A1F3, AICI3, A1Br3, 13eF3, GaF3, GaC13, GaBr3, NO3, BS2, BSO, BO2, F2, PFs, PC15, and ASF5 molecules on the geometric, electronic, linear, and nonlinear optical properties of an Mg12012 nanocage. The thermodynamic stability and feasibility of the adsorption process are investigated by analyzing the free energy. It is shown that the adsorptions of almost all molecules on the Mg12OI2 surface are exothermic. The calculations of the polarizability of these nanoclusters show that among the studied molecules, BeF3 has the largest influence on the polarizability value （a≈315 a.u., the unit a.u. is short for atomic unit）. The static first hyperpolarizability （β0） value is increased in the presence of these superhalogens. This increase is greatest for BeF3 and BF4 of which the highest value of the first hyperpolarizability （βO≈ 5775 a.u.） is related to a BeF3_c（e@Mgl2Ol2） nanocluster. The adsorption position is a key to estimating the value of increasing the first hyperpolarizability.
基金Project supported by the National Natural Science Foundation of China （Grant No 60237010）, Municipal Scientific and Technological Development Project of Shanghai, China （Grant Nos 012261021 and 01161084） and the Applied Material Research and Development Program of Shanghai, China （Grant No 0111）.
文摘The analytical transfer matrix method （ATMM） is applied to calculating the critical radius τc and the dipole polarizability αd in two confined systems： the hydrogen atom and the Hulthēén potential. We find that there exists a linear relation between τe^1/2 and the quantum number nτ for a fixed angular quantum number l, moreover, the three bounds of αd（αd^K,αd^B,αd^U） satisfy an inequality：αd^K≤αd^B≤αd^U,A comparison betwen the ATMM,the exact numerical analysis, and the variational wavefunctions shows that our method works very well in the systems.
基金supported by the National Basic Research Program of China(Grant No.2012CB821305)the National Natural Science Foundation of China(Grant Nos.11034009 and 11274246)
文摘A semi-empirical atomic structure model method is developed in the framework of a relativistic case. This method starts from Dirac-Fock calculations using B-spline basis set. The core-valence electron correction is then treated in a semiempirical core polarization potential. As an application, the polarization properties of alkali metal atoms, including the static polarizabilities and long-range two-body dispersion coefficients, have been calculated. Our results are in good agreement with the results obtained from ab initio relativistic many-body perturbation method and the available experimental measurements.
