Soft rot is an economically significant disease in potato and one of the major threats to sustainable potato production.This study aimed at isolating lytic bacteriophages and evaluating methods for and the efficacy of...Soft rot is an economically significant disease in potato and one of the major threats to sustainable potato production.This study aimed at isolating lytic bacteriophages and evaluating methods for and the efficacy of applying phages to control potato soft rot caused by Pectobacterium carotovorum.Eleven bacteriophages isolated from soil and water samples collected in Wuhan,China,were used to infect P.carotovorum host strains isolated from potato tubers showing soft rot symptoms in Nakuru county,Kenya.The efficacy of the phages in controlling soft rot disease was evaluated by applying individual phage strains or a phage cocktail on potato slices and tubers at different time points before or after inoculation with a P.carotovorum strain.The phages could lyse 20 strains of P.carotovorum,but not Pseudomonas fluorescens control strains.Among the 11 phages,Pectobacterium phage Wc5r,interestingly showed cross-activity against Pectobacterium atrosepticum and two phage-resistant P.carotovorum strains.Potato slice assays showed that the phage concentration and timing of application are crucial factors for effective soft rot control.Phage cocktail applied at a concentration of 1×10^9 plaque-forming units per milliliter before or within an hour after bacterial inoculation on potato slices,resulted in>90%reduction of soft rot symptoms.This study provides a basis for the development and application of phages to reduce the impact of potato soft rot disease.展开更多
Chinese cabbage(Brassica rapa subsp.pekinensis)suffers from soft rot disease caused by Pectobacterium carotovorum(Pc).To uncover the mechanisms underlying the defense response of Chinese cabbage to Pc,we constructed a...Chinese cabbage(Brassica rapa subsp.pekinensis)suffers from soft rot disease caused by Pectobacterium carotovorum(Pc).To uncover the mechanisms underlying the defense response of Chinese cabbage to Pc,we constructed a suppression subtractive hybridization(SSH)library from Pc-infected cabbage and obtained 1919 non-redundant expressed sequence tags(ESTs),which were used for cDNA microarray.We detected 800 differentially expressed genes(DEGs)in cabbage at different time points post-Pc inoculation,which were further confirmed by quantitative real-time PCR.One quarter of these DEGs were involved in the biotic stress pathways visualized by MapMan.Among them,8,8,1,3,and 2 DEGs were related to jasmonic acid(JA),ethylene(ET),JA+ET,auxin,and abscisic acid(ABA)signaling pathways,respectively,while no DEG was detected for salicylic acid(SA)signaling.Assessment of phytohormone production in the Pc-infected leaves showed that JA and ET production was increased,while SA production was decreased.Treatment with JA,methyl jasmonate(MeJA),the ET precursor 1-aminocyclopropane-1-carboxylate(ACC),or combinations thereof,reduced the disease severity,and the JA and JA+ACC treatments were superior and performed equally well.Our findings suggest that JA and ET may act synergistically against Pc infection in Chinese cabbage,and JA-mediated signaling might be the most significant.展开更多
Various bacterial species are known to be agents causing soft rot of potatoes. The results of this study showed that potato soft rot is widely spread in different potato planting areas in Jordan. A survey was conducte...Various bacterial species are known to be agents causing soft rot of potatoes. The results of this study showed that potato soft rot is widely spread in different potato planting areas in Jordan. A survey was conducted through the years 2013-2015 to detect potato soft rot disease in Jordan, two hundred and four rotted potato samples were collected from different potato growing areas through different potato growing seasons. One hundred and thirty one bacterial isolates were isolated, purified on selective media and identified as Pectobacterium carotovorum subspecies carotovorum (Pcc) by different biochemical and physiological tests. Furthermore, 131 Pcc Jordanian (Jo) isolates were identified by PCR analysis of total DNA extracted from isolates that were biochemically identified as Pcc using universal primer Fd1/Rd1. Cloning and sequencing of representative PCR products, amplifying the 16S rDNA region were done. Phylogenetic analysis of the Pcc Jo-isolates revealed other than 90% similarity with different reference Pcc strains available at the GenBank. Different rot causal agents also were detected by PCR amplification and further sequences. The sequencing data revealed similarities to Pseudomonas fluorescence, Enterobacteriaceae genera such as Enterobacter spp., Serratia spp. and Klebsiella spp., in addition to Pectobacterium carotovorum subsp. carotovorum. This study indicated that using molecular techniques such as amplification of 16S rDNA region is a sensitive and specific method for detecting Pcc as potato soft rot causal agent. So far this is the first study where Pcc has been identified by using PCR and sequencing approaches in Jordan.展开更多
[Objective]The paper was to screen the effective agents for effectively controlling the occurrence and prevalence of taro soft rot.[Method]The fungicidal effects of 11 fungicides on taro soft rot were determined by in...[Objective]The paper was to screen the effective agents for effectively controlling the occurrence and prevalence of taro soft rot.[Method]The fungicidal effects of 11 fungicides on taro soft rot were determined by inhibition zone method.[Result]0.3%Tetramycin,25%bromothalonil,3%Zhongshengmycin and 30%zinc thiazole had better antifungal effect on Pectobacterium aroidearum at recommended concentration.The indoor toxicity of four fungicides showed that the EC50 of 0.3%tetramycin AS was the smallest of 0.6μg/mL,indicating that tetramycin had the largest toxicity and the best inhibitory effect against P.aroidearum;followed by 25%bromothalonil EC and 3%Zhongshengmycin WP,with the EC_(50) of 2.57 and 97.72μg/mL,respectively;the inhibitory effect of 30%zinc thiazole SC against P.aroidearum was the poorest.[Conclusion]The study provides a reference for screening out new and efficient chemical agents against taro soft rot.展开更多
Pectobacterium chrysanthemi is one of the main pathogens of soft rot disease of Amorphophallus konjac.The bacteriostatic effect of extracts from 10 kinds of traditional Chinese medicine and garlic on Pectobacterium ch...Pectobacterium chrysanthemi is one of the main pathogens of soft rot disease of Amorphophallus konjac.The bacteriostatic effect of extracts from 10 kinds of traditional Chinese medicine and garlic on Pectobacterium chrysanthemi was studied in this experiment.The results showed that the extracts of Coptis chinensis,garlic,Scutellaria baicalensis,Mume Fructus and Bupleurum had significant bacteriostatic effect.Among them,Coptis chinensis and garlic had the best bacteriostatic effect on Pectobacterium chrysanthemi,and the diameter of inhibition zone was 2.27 and 2.19 cm,respectively,followed by Scutellaria baicalensis,with the diameter of inhibition zone of 1.68 cm.The extracts of Coptis chinensis,Scutellaria baicalensis and garlic with good bacteriostatic effect were diluted by double dilution method,and the bacteriostatic effect was determined.The results showed that 2-fold dilution of Coptis chinensis and 2-fold and 4-fold dilution of Scutellaria baicalensis had significant bacteriostatic effect,but the bacteriostatic effect of garlic extract was not obvious after dilution.展开更多
Bacterial soft rot(BSR)caused by Pectobacterium carotovorum subsp.brasiliense(Pcb)is a serious bacterial disease which negatively impact yield and quality in cucumber.However,the genetic mechanism of BSR resistance in...Bacterial soft rot(BSR)caused by Pectobacterium carotovorum subsp.brasiliense(Pcb)is a serious bacterial disease which negatively impact yield and quality in cucumber.However,the genetic mechanism of BSR resistance in cucumber has not been reported.Here,we investigated the BSR resistance of 119 cucumber core germplasm worldwide at the seedling stage and identified 26 accessions highly resistant to BSR.A total of 1642740 single-nucleotide polymorphisms(SNPs)were used to conduct GWAS,and five loci associated with BSR resistance were detected on four chromosomes:gBSR2.1,gBSR2.2,gBSR3.1,gBSR4.1 and gBSR5.1.Based on haplotype analysis,sequence polymorphisms,functional annotation and qRT-PCR analysis,six candidate genes were identified within the five loci.CsaV3_2G014450,CsaV3_2G014490,CsaV3_2G016000,CsaV3_3G000850,CsaV3_4G033150,and CsaV3_5G000390 each had nonsynonymous SNPs,and were significantly up-regulated in the resistant genotypes after inoculation.And CsaV3_5G000390 in the susceptible genotype was significantly up-regulated after inoculation.The identification of these candidate genes lays a foundation for understanding the genetic mechanism of BSR resistance in cucumber.Generally,our study mined genes associated with BSR resistance in cucumber seedlings and will assist the breeding of BSR-resistant cucumber cultivars.展开更多
基金supported financially by the Sino-Africa Joint Research Centre (SAJC201605)the Chinese Academy of Sciences (ZDRW-ZS-2016-4)
文摘Soft rot is an economically significant disease in potato and one of the major threats to sustainable potato production.This study aimed at isolating lytic bacteriophages and evaluating methods for and the efficacy of applying phages to control potato soft rot caused by Pectobacterium carotovorum.Eleven bacteriophages isolated from soil and water samples collected in Wuhan,China,were used to infect P.carotovorum host strains isolated from potato tubers showing soft rot symptoms in Nakuru county,Kenya.The efficacy of the phages in controlling soft rot disease was evaluated by applying individual phage strains or a phage cocktail on potato slices and tubers at different time points before or after inoculation with a P.carotovorum strain.The phages could lyse 20 strains of P.carotovorum,but not Pseudomonas fluorescens control strains.Among the 11 phages,Pectobacterium phage Wc5r,interestingly showed cross-activity against Pectobacterium atrosepticum and two phage-resistant P.carotovorum strains.Potato slice assays showed that the phage concentration and timing of application are crucial factors for effective soft rot control.Phage cocktail applied at a concentration of 1×10^9 plaque-forming units per milliliter before or within an hour after bacterial inoculation on potato slices,resulted in>90%reduction of soft rot symptoms.This study provides a basis for the development and application of phages to reduce the impact of potato soft rot disease.
基金the Beijing Leafy Vegetables Innovation Team of Modern Agro-industry Technology Research System,China(BAIC07)the Beijing Natural Science Foundation,China(5051002)。
文摘Chinese cabbage(Brassica rapa subsp.pekinensis)suffers from soft rot disease caused by Pectobacterium carotovorum(Pc).To uncover the mechanisms underlying the defense response of Chinese cabbage to Pc,we constructed a suppression subtractive hybridization(SSH)library from Pc-infected cabbage and obtained 1919 non-redundant expressed sequence tags(ESTs),which were used for cDNA microarray.We detected 800 differentially expressed genes(DEGs)in cabbage at different time points post-Pc inoculation,which were further confirmed by quantitative real-time PCR.One quarter of these DEGs were involved in the biotic stress pathways visualized by MapMan.Among them,8,8,1,3,and 2 DEGs were related to jasmonic acid(JA),ethylene(ET),JA+ET,auxin,and abscisic acid(ABA)signaling pathways,respectively,while no DEG was detected for salicylic acid(SA)signaling.Assessment of phytohormone production in the Pc-infected leaves showed that JA and ET production was increased,while SA production was decreased.Treatment with JA,methyl jasmonate(MeJA),the ET precursor 1-aminocyclopropane-1-carboxylate(ACC),or combinations thereof,reduced the disease severity,and the JA and JA+ACC treatments were superior and performed equally well.Our findings suggest that JA and ET may act synergistically against Pc infection in Chinese cabbage,and JA-mediated signaling might be the most significant.
文摘Various bacterial species are known to be agents causing soft rot of potatoes. The results of this study showed that potato soft rot is widely spread in different potato planting areas in Jordan. A survey was conducted through the years 2013-2015 to detect potato soft rot disease in Jordan, two hundred and four rotted potato samples were collected from different potato growing areas through different potato growing seasons. One hundred and thirty one bacterial isolates were isolated, purified on selective media and identified as Pectobacterium carotovorum subspecies carotovorum (Pcc) by different biochemical and physiological tests. Furthermore, 131 Pcc Jordanian (Jo) isolates were identified by PCR analysis of total DNA extracted from isolates that were biochemically identified as Pcc using universal primer Fd1/Rd1. Cloning and sequencing of representative PCR products, amplifying the 16S rDNA region were done. Phylogenetic analysis of the Pcc Jo-isolates revealed other than 90% similarity with different reference Pcc strains available at the GenBank. Different rot causal agents also were detected by PCR amplification and further sequences. The sequencing data revealed similarities to Pseudomonas fluorescence, Enterobacteriaceae genera such as Enterobacter spp., Serratia spp. and Klebsiella spp., in addition to Pectobacterium carotovorum subsp. carotovorum. This study indicated that using molecular techniques such as amplification of 16S rDNA region is a sensitive and specific method for detecting Pcc as potato soft rot causal agent. So far this is the first study where Pcc has been identified by using PCR and sequencing approaches in Jordan.
基金Supported by Research and Demonstration of Key Technologies for Rhizome Disease Control in Yimeng Tobacco Area(201906)Science and Technology Innovation Project of Chinese Academy of Agri-cultural Sciences(ASTIP-TRIC04)Demonstration of Green Degradation Technology and Resource Utilization of Tobacco Straw(202013)。
文摘[Objective]The paper was to screen the effective agents for effectively controlling the occurrence and prevalence of taro soft rot.[Method]The fungicidal effects of 11 fungicides on taro soft rot were determined by inhibition zone method.[Result]0.3%Tetramycin,25%bromothalonil,3%Zhongshengmycin and 30%zinc thiazole had better antifungal effect on Pectobacterium aroidearum at recommended concentration.The indoor toxicity of four fungicides showed that the EC50 of 0.3%tetramycin AS was the smallest of 0.6μg/mL,indicating that tetramycin had the largest toxicity and the best inhibitory effect against P.aroidearum;followed by 25%bromothalonil EC and 3%Zhongshengmycin WP,with the EC_(50) of 2.57 and 97.72μg/mL,respectively;the inhibitory effect of 30%zinc thiazole SC against P.aroidearum was the poorest.[Conclusion]The study provides a reference for screening out new and efficient chemical agents against taro soft rot.
文摘Pectobacterium chrysanthemi is one of the main pathogens of soft rot disease of Amorphophallus konjac.The bacteriostatic effect of extracts from 10 kinds of traditional Chinese medicine and garlic on Pectobacterium chrysanthemi was studied in this experiment.The results showed that the extracts of Coptis chinensis,garlic,Scutellaria baicalensis,Mume Fructus and Bupleurum had significant bacteriostatic effect.Among them,Coptis chinensis and garlic had the best bacteriostatic effect on Pectobacterium chrysanthemi,and the diameter of inhibition zone was 2.27 and 2.19 cm,respectively,followed by Scutellaria baicalensis,with the diameter of inhibition zone of 1.68 cm.The extracts of Coptis chinensis,Scutellaria baicalensis and garlic with good bacteriostatic effect were diluted by double dilution method,and the bacteriostatic effect was determined.The results showed that 2-fold dilution of Coptis chinensis and 2-fold and 4-fold dilution of Scutellaria baicalensis had significant bacteriostatic effect,but the bacteriostatic effect of garlic extract was not obvious after dilution.
基金supported by the National Key Research and Development Program of China(Grant No.2023YFD1200101)the Earmarked Fund for Modern Agro-industry Technology Research System(Grant No.CARS-23)Science and Technology Innovation Program of the Chinese Academy of Agricultural Science(Grant No.CAAS-ASTIP-IVFCAAS).
文摘Bacterial soft rot(BSR)caused by Pectobacterium carotovorum subsp.brasiliense(Pcb)is a serious bacterial disease which negatively impact yield and quality in cucumber.However,the genetic mechanism of BSR resistance in cucumber has not been reported.Here,we investigated the BSR resistance of 119 cucumber core germplasm worldwide at the seedling stage and identified 26 accessions highly resistant to BSR.A total of 1642740 single-nucleotide polymorphisms(SNPs)were used to conduct GWAS,and five loci associated with BSR resistance were detected on four chromosomes:gBSR2.1,gBSR2.2,gBSR3.1,gBSR4.1 and gBSR5.1.Based on haplotype analysis,sequence polymorphisms,functional annotation and qRT-PCR analysis,six candidate genes were identified within the five loci.CsaV3_2G014450,CsaV3_2G014490,CsaV3_2G016000,CsaV3_3G000850,CsaV3_4G033150,and CsaV3_5G000390 each had nonsynonymous SNPs,and were significantly up-regulated in the resistant genotypes after inoculation.And CsaV3_5G000390 in the susceptible genotype was significantly up-regulated after inoculation.The identification of these candidate genes lays a foundation for understanding the genetic mechanism of BSR resistance in cucumber.Generally,our study mined genes associated with BSR resistance in cucumber seedlings and will assist the breeding of BSR-resistant cucumber cultivars.
