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检测STAT2基因多态性的PCR-PIRA方法的建立
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作者 袁媛 黄玉梅 +3 位作者 钟待鸣 朱敏 姚芳玲 黎明 《现代生物医学进展》 CAS 2013年第14期2763-2767,共5页
目的:为了检测信号转导和转录活化蛋白2(signal transducer and activator of transcription factor 2,STAT2)基因的rs12422499和rs2066807两个单核苷酸多态性(single nucleotide polymorphism,SNP),建立一种简单、可靠的多聚酶链式反应... 目的:为了检测信号转导和转录活化蛋白2(signal transducer and activator of transcription factor 2,STAT2)基因的rs12422499和rs2066807两个单核苷酸多态性(single nucleotide polymorphism,SNP),建立一种简单、可靠的多聚酶链式反应-引物介导的限制性分析法(polymerase chain reaction-primer introduced restriction analysis,PCR-PIRA)。方法:微量盐析法提取外周静脉全血DNA,设计引物扩增STAT2基因的rs2066807及rs12422499位点所在的基因片段,采用限制性内切酶PsyI及BseDI分别酶切相应PCR产物,凝胶电泳方法观察酶切结果。同时将PCR产物进行DNA测序。结果:PCR扩增rs2066807基因片段,长度为469bp,经PsyI酶切后电泳,根据酶切产物片段大小判断rs2066807的C/C(469 bp)、G/G(262 bp、207 bp)、C/G(469 bp、262 bp及207bp)三种基因型;PCR扩增rs12422499基因片段,长度为189 bp,经BseDI酶切后电泳,根据酶切产物片段大小判断rs12422499的C/C(189 bp)、G/G(134 bp、55 bp)、C/G(189 bp、134 bp及55 bp)三种基因型。将PCR产物直接进行DNA测序,SNP测序结果与PCR-PIRA方法获得的结果一致。结论:成功建立了一种检测STAT2基因SNPs的PCR-PIRA法,该方法只需简单的PCR扩增和酶切消化,因此操作简单、方便;通过与直接测序结果比较,显示该方法可信。PCR-RIPA方法不仅为检测STAT2基因多态性提供了实验手段,也为检测其他基因点突变提供了实验方法。 展开更多
关键词 多聚酶链式反应-引物介导的限制性分析法 单核苷酸多态性 信号转导和转录活化蛋白2
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中国荷斯坦牛CVM的基因检测及其与产奶性状的关联分析 被引量:9
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作者 初芹 张毅 +3 位作者 孙东晓 俞英 王雅春 张沅 《遗传》 CAS CSCD 北大核心 2010年第7期732-736,共5页
脊椎畸形综合征(Complex vertebral malformation,CVM)是由位于牛第3号染色体(BTA3)的SLC35A3基因外显子4的一个单碱基突变(G559T)所致。该致病基因在世界许多国家的荷斯坦牛群中都有一定的比例。文章对北京地区38头优秀种公牛进行分析... 脊椎畸形综合征(Complex vertebral malformation,CVM)是由位于牛第3号染色体(BTA3)的SLC35A3基因外显子4的一个单碱基突变(G559T)所致。该致病基因在世界许多国家的荷斯坦牛群中都有一定的比例。文章对北京地区38头优秀种公牛进行分析,发现了4头携带者,进而检测了这些携带者公牛的555头女儿的基因型,其中携带者占检测母牛数的44.0%。此外,关联分析结果表明,携带者母牛与非携带者母牛的生产性能之间存在显著差异(P<0.01)。携带者母牛的5个产奶性状育种值均显著高于非携带者,泌乳持续力和体细胞评分SCS的育种值也比非携带者略高。CVM致病基因可能与BTA3上影响产奶性状的QTL或基因连锁。因此,建议生产中对CVM携带者进行逐步淘汰。 展开更多
关键词 脊椎畸形综合征 SLC35A3基因 中国荷斯坦牛 引入酶切位点聚合酶链式反应(PIRA—PCR) 关联分析
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BAX G(-248)A Gene Polymorphism and Its Association with Risk of Non-Small Cell Lung Cancer—A Case Control Study
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作者 Jamsheed Javid Rashid Mir +2 位作者 Pramod Kumar Julka Prakash Chandra Ray Alpana Saxena 《Open Journal of Apoptosis》 2015年第2期47-58,共12页
Pro-apoptotic Bcl-2 protein BAX is an important member of mitochondrial dependent apoptosis regulation and ultimately plays a pivotal role in malignancies. A promoter G(-248)A polymorphism in the TP53 binding region o... Pro-apoptotic Bcl-2 protein BAX is an important member of mitochondrial dependent apoptosis regulation and ultimately plays a pivotal role in malignancies. A promoter G(-248)A polymorphism in the TP53 binding region of BAX results in differential binding capacity of TP53 protein there by regulating its expression, which has been found to be associated with different clinical outcomes in various malignancies. Presently we aimed to analyze the possible impact of the BAX G(-248)A polymorphism on the risk and other clinical features of non-small cell lung cancer in Indian population. The BAX promoter polymorphism was analyzed in blood samples of 320 subjects with 1:1 case/control ratio by primer-introduced restriction analysis PCR and survival curves were plotted using Kaplan-Meier analysis. It was observed that more than 3-fold increased risk of developing non-small cell lung cancer was associated with homozygous AA genotype of BAX G(-248)A promoter polymorphism in Indian population, with more predominant in smokers with pack-year > 45 (heavy) and using cigarette or huka as their smoking source than homozygous GG genotype. Significant associations was observed between TNM stage (p = 0.037) and histological type (0.02), of non-small cell lung cancer patients with the polymorphism. Patients homozygous for A allele exhibited a significant poor overall survival compared with patients displaying GA + AA or GA or GG genotype [median survival 6.0 vs 9.0, 11.0, and 30.0 months, respectively (p < 0.0001)]. Adenocarcinoma and advanced stage patients with AA genotype showed lower median survival time than squamous cell carcinoma and early stage non-small cell lung cancer patients (median 3.0 and 5.0 vs 8.0 and 9.0 months, respectively). We conclude that the genetic polymorphism G(-248)A in the TP53 binding promoter region of pro-apoptotic genes BAX may contribute to the risk of developing non-small cell lung cancer in Indian population and also may be an important factor for adverse clinical outcome for patients with non-small cell lung cancer. 展开更多
关键词 BAX G(-248)A POLYMORPHISM PIRA-PCR NSCLC RISK
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