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Enrichment Analysis and Deep Learning in Biomedical Ontology:Applications and Advancements
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作者 Hong-Yu Fu Yang-Yang Liu +1 位作者 Mei-Yi Zhang Hai-Xiu Yang 《Chinese Medical Sciences Journal》 2025年第1期45-56,I0006,共13页
Biomedical big data,characterized by its massive scale,multi-dimensionality,and heterogeneity,offers novel perspectives for disease research,elucidates biological principles,and simultaneously prompts changes in relat... Biomedical big data,characterized by its massive scale,multi-dimensionality,and heterogeneity,offers novel perspectives for disease research,elucidates biological principles,and simultaneously prompts changes in related research methodologies.Biomedical ontology,as a shared formal conceptual system,not only offers standardized terms for multi-source biomedical data but also provides a solid data foundation and framework for biomedical research.In this review,we summarize enrichment analysis and deep learning for biomedical ontology based on its structure and semantic annotation properties,highlighting how technological advancements are enabling the more comprehensive use of ontology information.Enrichment analysis represents an important application of ontology to elucidate the potential biological significance for a particular molecular list.Deep learning,on the other hand,represents an increasingly powerful analytical tool that can be more widely combined with ontology for analysis and prediction.With the continuous evolution of big data technologies,the integration of these technologies with biomedical ontologies is opening up exciting new possibilities for advancing biomedical research. 展开更多
关键词 biomedical ontology enrichment analysis deep learning ontology hierarchy ontology annotation
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Expert System Based on Ontology and Interpretable Machine Learning to Assist in the Discovery of Railway Accident Scenarios
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作者 Habib Hadj-Mabrouk 《Computers, Materials & Continua》 2025年第9期4399-4430,共32页
A literature review on AI applications in the field of railway safety shows that the implemented approaches mainly concern the operational,maintenance,and feedback phases following railway incidents or accidents.These... A literature review on AI applications in the field of railway safety shows that the implemented approaches mainly concern the operational,maintenance,and feedback phases following railway incidents or accidents.These approaches exploit railway safety data once the transport system has received authorization for commissioning.However,railway standards and regulations require the development of a safety management system(SMS)from the specification and design phases of the railway system.This article proposes a new AI approach for analyzing and assessing safety from the specification and design phases of the railway system with a view to improving the development of the SMS.Unlike some learning methods,the proposed approach,which is dedicated in particular to safety assessment bodies,is based on semi-supervised learning carried out in close collaboration with safety experts who contributed to the development of a database of potential accident scenarios(learning example database)relating to the risk of rail collision.The proposed decision support is based on the use of an expert system whose knowledge base is automatically generated by inductive learning in the form of an association rule(rule base)and whose main objective is to suggest to the safety expert possible hazards not considered during the development of the SMS to complete the initial hazard register. 展开更多
关键词 Artificial intelligence ontology semi-supervised learning expert system association rules railways safety HAZARD accident scenarios classification assessment
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Ontology Matching Method Based on Gated Graph Attention Model
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作者 Mei Chen Yunsheng Xu +1 位作者 Nan Wu Ying Pan 《Computers, Materials & Continua》 2025年第3期5307-5324,共18页
With the development of the Semantic Web,the number of ontologies grows exponentially and the semantic relationships between ontologies become more and more complex,understanding the true semantics of specific terms o... With the development of the Semantic Web,the number of ontologies grows exponentially and the semantic relationships between ontologies become more and more complex,understanding the true semantics of specific terms or concepts in an ontology is crucial for the matching task.At present,the main challenges facing ontology matching tasks based on representation learning methods are how to improve the embedding quality of ontology knowledge and how to integrate multiple features of ontology efficiently.Therefore,we propose an Ontology Matching Method Based on the Gated Graph Attention Model(OM-GGAT).Firstly,the semantic knowledge related to concepts in the ontology is encoded into vectors using the OWL2Vec^(*)method,and the relevant path information from the root node to the concept is embedded to understand better the true meaning of the concept itself and the relationship between concepts.Secondly,the ontology is transformed into the corresponding graph structure according to the semantic relation.Then,when extracting the features of the ontology graph nodes,different attention weights are assigned to each adjacent node of the central concept with the help of the attention mechanism idea.Finally,gated networks are designed to further fuse semantic and structural embedding representations efficiently.To verify the effectiveness of the proposed method,comparative experiments on matching tasks were carried out on public datasets.The results show that the OM-GGAT model can effectively improve the efficiency of ontology matching. 展开更多
关键词 ontology matching representation learning OWL2Vec*method graph attention model
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Intelligent Spatial Anomaly Activity Recognition Method Based on Ontology Matching
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作者 Longgang Zhao Seok-Won Lee 《Computers, Materials & Continua》 2025年第6期4447-4476,共30页
This research addresses the performance challenges of ontology-based context-aware and activity recognition techniques in complex environments and abnormal activities,and proposes an optimized ontology framework to im... This research addresses the performance challenges of ontology-based context-aware and activity recognition techniques in complex environments and abnormal activities,and proposes an optimized ontology framework to improve recognition accuracy and computational efficiency.The method in this paper adopts the event sequence segmentation technique,combines location awareness with time interval reasoning,and improves human activity recognition through ontology reasoning.Compared with the existing methods,the framework performs better when dealing with uncertain data and complex scenes,and the experimental results show that its recognition accuracy is improved by 15.6%and processing time is reduced by 22.4%.In addition,it is found that with the increase of context complexity,the traditional ontology inferencemodel has limitations in abnormal behavior recognition,especially in the case of high data redundancy,which tends to lead to a decrease in recognition accuracy.This study effectively mitigates this problem by optimizing the ontology matching algorithm and combining parallel computing and deep learning techniques to enhance the activity recognition capability in complex environments. 展开更多
关键词 Context awareness activity recognition ontological reasoning complex context anomaly detection
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Ontology的类型及汉语词网的Ontology结构 被引量:2
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作者 萧国政 姬东鸿 肖珊 《长江学术》 2011年第2期111-117,共7页
Ontology在不同领域有不同的理解,本文在阐述哲学和人工智能领域Ontology差异的基础上,揭示了它们间的联系,建构了哲学、技术和语言三足鼎立的Ontology系统,着重论述了语言Ontology及其结构。并认为Ontology是一种思维方式和方法,随着... Ontology在不同领域有不同的理解,本文在阐述哲学和人工智能领域Ontology差异的基础上,揭示了它们间的联系,建构了哲学、技术和语言三足鼎立的Ontology系统,着重论述了语言Ontology及其结构。并认为Ontology是一种思维方式和方法,随着其应用领域的延伸,还会有新的不同类型的Ontology产生。 展开更多
关键词 ontology ontology类型 语言ontology ontology结构
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Paleontology Knowledge Graph for Data-Driven Discovery
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作者 Yiying Deng Sicun Song +19 位作者 Junxuan Fan Mao Luo Le Yao Shaochun Dong Yukun Shi Linna Zhang Yue Wang Haipeng Xu Huiqing Xu Yingying Zhao Zhaohui Pan Zhangshuai Hou Xiaoming Li Boheng Shen Xinran Chen Shuhan Zhang Xuejin Wu Lida Xing Qingqing Liang Enze Wang 《Journal of Earth Science》 SCIE CAS CSCD 2024年第3期1024-1034,共11页
A knowledge graph(KG)is a knowledge base that integrates and represents data based on a graph-structured data model or topology.Geoscientists have made efforts to construct geosciencerelated KGs to overcome semantic h... A knowledge graph(KG)is a knowledge base that integrates and represents data based on a graph-structured data model or topology.Geoscientists have made efforts to construct geosciencerelated KGs to overcome semantic heterogeneity and facilitate knowledge representation,data integration,and text analysis.However,there is currently no comprehensive paleontology KG or data-driven discovery based on it.In this study,we constructed a two-layer model to represent the ordinal hierarchical structure of the paleontology KG following a top-down construction process.An ontology containing 19365 concepts has been defined up to 2023.On this basis,we derived the synonymy list based on the paleontology KG and designed corresponding online functions in the OneStratigraphy database to showcase the use of the KG in paleontological research. 展开更多
关键词 paleontology knowledge graph ontology synonymy list OneStratigraphy big data ge-ology.
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General ontology learning framework 被引量:11
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作者 刘柏嵩 高济 《Journal of Southeast University(English Edition)》 EI CAS 2006年第3期381-384,共4页
In order to reduce the costs of the ontology construction, a general ontology learning framework (GOLF) is developed. The key technologies of the GOLF including domain concepts extraction and semantic relationships ... In order to reduce the costs of the ontology construction, a general ontology learning framework (GOLF) is developed. The key technologies of the GOLF including domain concepts extraction and semantic relationships between concepts and taxonomy automatic construction are proposed. At the same time ontology evaluation methods are also discussed. The experimental results show that this method produces better performance and it is applicable across different domains. By integrating several machine learning algorithms, this method suffers less ambiguity and can identify domain concepts and relations more accurately. By using generalized corpus WordNet and HowNet, this method is applicable across different domains. In addition, by obtaining source documents from the web on demand, the GOLF can produce up-to-date ontologies. 展开更多
关键词 ontology ontology learning ontology evaluation semantic web
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Process Philosophical Adventures of Applied Ontology
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作者 Vesselin Petrov 《Journal of Philosophy Study》 2016年第1期26-33,共8页
The paper is devoted to the new sphere of applied process ontology. It first makes a short review of the recent investigations in that area. Then it stresses on the importance of applied process ontology. Next the mai... The paper is devoted to the new sphere of applied process ontology. It first makes a short review of the recent investigations in that area. Then it stresses on the importance of applied process ontology. Next the main methodological approaches of applied process ontology are considered: the "top down" and "bottom up" approaches. It is argued about the necessity and fruitfulness to combine both "top down" and "bottom up" approaches, and not to rely on one of them only. An example is given of the important role of process ontology as general methodological framework for the building up of regional formal ontology. Finally, the idea of variable ontological categories is stressed on and argued for its fruitfulness. 展开更多
关键词 applied ontology applied process ontology methodological framework of ontology regional ontology ontology as philosophy ontology as technology variable ontological categories
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Ontology Engineering and Knowledge Services for Agriculture Domain 被引量:12
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作者 Asanee Kawtrakul 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2012年第5期741-751,共11页
This paper presents a knowledge service system for the domain of agriculture. Three key issues for providing knowledge services are how to improve the access of unstructured and scattered information for the non-speci... This paper presents a knowledge service system for the domain of agriculture. Three key issues for providing knowledge services are how to improve the access of unstructured and scattered information for the non-specialist users, how to provide adequate information to knowledge workers and how to provide the information requiring highly focused and related information. Cyber-Brain has been designed as a platform that combines approaches based on knowledge engineering and language engineering to gather knowledge from various sources and to provide the effective knowledge service. Based on specially designed ontology for practical service scenarios, it can aggregate knowledge from Internet, digital archives, expert, and other resources for providing one-stop-shop knowledge services. The domain specific and task oriented ontology also enables advanced search and allows the system ensures that knowledge service could improve the user benefit. Users are presented with the necessary information closely related to their information need and thus of potential high interest. This paper presents several service scenarios for different end-users and reviews ontology engineering and its life cycle for supporting AOS (Agricultural Ontology Services) Vocbench which is the heart of knowledge services in agriculture domain. 展开更多
关键词 knowledge service ontology construction ontology design ontology maintenance natural languageprocessing ontology based knowledge services
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Using ontology and rules to retrieve the semantics of disaster remote sensing data 被引量:1
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作者 DONG Yumin LI Ziyang +1 位作者 LI Xuesong LI Xiaohui 《Journal of Systems Engineering and Electronics》 SCIE CSCD 2024年第5期1211-1218,共8页
Remote sensing data plays an important role in natural disaster management.However,with the increase of the variety and quantity of remote sensors,the problem of“knowledge barriers”arises when data users in disaster... Remote sensing data plays an important role in natural disaster management.However,with the increase of the variety and quantity of remote sensors,the problem of“knowledge barriers”arises when data users in disaster field retrieve remote sensing data.To improve this problem,this paper proposes an ontology and rule based retrieval(ORR)method to retrieve disaster remote sensing data,and this method introduces ontology technology to express earthquake disaster and remote sensing knowledge,on this basis,and realizes the task suitability reasoning of earthquake disaster remote sensing data,mining the semantic relationship between remote sensing metadata and disasters.The prototype system is built according to the ORR method,which is compared with the traditional method,using the ORR method to retrieve disaster remote sensing data can reduce the knowledge requirements of data users in the retrieval process and improve data retrieval efficiency. 展开更多
关键词 remote sensing data DISASTER ontology semantic reasoning
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基于Ontology的大规模知识库构建技术分析
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作者 洪娜 张智雄 《数字图书馆论坛》 2008年第9期19-25,70,共8页
基于Ontology的大规模知识库系统是语义内容应用的基础.文章介绍了四个有代表性的基于Ontology的大规模知识库系统,分别分析了系统的关键技术、特点和性能,并对它们的性能进行了对比分析,最后分析了当前系统的局限、挑战和趋势,以期对... 基于Ontology的大规模知识库系统是语义内容应用的基础.文章介绍了四个有代表性的基于Ontology的大规模知识库系统,分别分析了系统的关键技术、特点和性能,并对它们的性能进行了对比分析,最后分析了当前系统的局限、挑战和趋势,以期对国内数字图书馆知识库建设有所帮助.该文为2008年第9期本期话题'知识抽取'的文章之一. 展开更多
关键词 知识抽取 ontology存储 知识库 ontology推理 ontology查询 性能对比 数字图书馆
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在翻译之后开始:论学术译名的延异——以aesthetics、文艺学和ontology的翻译事件为例
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作者 郭思恒 刘旭光 《上海翻译(中英文)》 CSSCI 北大核心 2024年第5期1-7,F0003,共8页
翻译本质上是一个“延异”的过程,经由翻译产生的意涵散播往往不存在终极的确定性。因为在翻译之后,“译名”会在社会历史语境中生发出新的意味来,从而超出翻译最初的设定。因此,翻译是一个“事件”,却不是一个“事实”。进行一次翻译,... 翻译本质上是一个“延异”的过程,经由翻译产生的意涵散播往往不存在终极的确定性。因为在翻译之后,“译名”会在社会历史语境中生发出新的意味来,从而超出翻译最初的设定。因此,翻译是一个“事件”,却不是一个“事实”。进行一次翻译,实际上仅仅是一个事件的“发生”,而这个“发生”永远是一个进行时,真正的“翻译”是从“翻译之后”开始的。因而,持久的理解与交流,并且进行不断校准式的翻译,才是文化交流的正确方式。 展开更多
关键词 翻译 延异 AESTHETICS 文艺学 ontology
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Integrating Ontology-Based Approaches with Deep Learning Models for Fine-Grained Sentiment Analysis
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作者 Longgang Zhao Seok-Won Lee 《Computers, Materials & Continua》 SCIE EI 2024年第10期1855-1877,共23页
Although sentiment analysis is pivotal to understanding user preferences,existing models face significant challenges in handling context-dependent sentiments,sarcasm,and nuanced emotions.This study addresses these cha... Although sentiment analysis is pivotal to understanding user preferences,existing models face significant challenges in handling context-dependent sentiments,sarcasm,and nuanced emotions.This study addresses these challenges by integrating ontology-based methods with deep learning models,thereby enhancing sentiment analysis accuracy in complex domains such as film reviews and restaurant feedback.The framework comprises explicit topic recognition,followed by implicit topic identification to mitigate topic interference in subsequent sentiment analysis.In the context of sentiment analysis,we develop an expanded sentiment lexicon based on domainspecific corpora by leveraging techniques such as word-frequency analysis and word embedding.Furthermore,we introduce a sentiment recognition method based on both ontology-derived sentiment features and sentiment lexicons.We evaluate the performance of our system using a dataset of 10,500 restaurant reviews,focusing on sentiment classification accuracy.The incorporation of specialized lexicons and ontology structures enables the framework to discern subtle sentiment variations and context-specific expressions,thereby improving the overall sentiment-analysis performance.Experimental results demonstrate that the integration of ontology-based methods and deep learning models significantly improves sentiment analysis accuracy. 展开更多
关键词 Deep learning ontology fine-grained sentiment analysis online reviews
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An ontology-based web decision support system to find entertainment points of interest in an urban area
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作者 Mohammad H.Vahidnia Mojde Minaei Saeed Behzadi 《Geo-Spatial Information Science》 CSCD 2024年第2期505-522,共18页
In recent years,decision support systems(DSSs)have successfully deployed ontologies in their architecture.The result of such a use is information systems that assist users and organizations in semi-structured decision... In recent years,decision support systems(DSSs)have successfully deployed ontologies in their architecture.The result of such a use is information systems that assist users and organizations in semi-structured decision-making activities.Visitors from throughout Iran travel to different cities and regions every year,and they need help making their choices.Some of these tourists are unable to visit the beautiful areas of the destination city due to a lack of awareness.In this study,we design an ontology-based spatial DSS to find entertainment and tourism centers in Arak,Iran.The objective is to provide users with recommendations appropriate for the location,time,age group,type of activity,and other factors.In this model,the demands and concerns of tourists have been managed by creating a domain Web Ontology Language(OWL)for entertainment centers as a knowledge base in the Protégéenvironment.The developed webbased DSS operates on a client-server architecture using technologies such as Werkzeug and Flask.As a result,it makes it possible to ontology reasoning based on the HermiT engine to choose the right center and conduct a semantic search on classes related to the appropriate point of interest.The main distinction between the proposed methodology and the previous studies on spatial DSS is that criteria are object properties in an ontology.Therefore,decision support relies on real-time reasoning rather than transforming criteria into geospatial layers.The evaluation results confirmed efficient interaction with this system,purposeful information retrieval,and rapid decision-making process.The results also indicated that searching for a POI(point of interest)in the study area using the developed system is at least 30%more successful than a search engine or social media.Moreover,to overcome the cold start problem,the proposed technique might be utilized in conjunction with the POI recommender systems. 展开更多
关键词 Semantic web ontology tourism POI(point of interest) GIS DSS(decision support system) multicriteria analysis
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Web integration based on classification ontology 被引量:2
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作者 高克宁 马安香 张斌 《Journal of Southeast University(English Edition)》 EI CAS 2006年第3期426-429,共4页
In order to eliminate semantic heterogeneity and implement semantic combination in web information integration, the classification ontology is introduced into web information integration. It constructs a standard clas... In order to eliminate semantic heterogeneity and implement semantic combination in web information integration, the classification ontology is introduced into web information integration. It constructs a standard classification ontology based on web-glossary by extracting classified structures of websites and building mappings between them in order to get unified views. Mapping is defined by calculating concept subordinate matching degrees, concept associate matching degrees and concept dominate matching degrees. A web information integration system is realized, which can effectively solve the problem of classification semantic heterogeneity and implement the integration of web information source and the personal configuration of users. 展开更多
关键词 information integration classification ontology ontology integration PERSONALIZATION
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Ontology based approach of semantic information integration 被引量:1
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作者 杨先娣 何宁 +1 位作者 吴黎兵 刘君强 《Journal of Southeast University(English Edition)》 EI CAS 2007年第3期338-342,共5页
In order to solve the problem of semantic heterogeneity in information integration, an ontology based semantic information integration (OSII) model and its logical framework are proposed. The OSII adopts the hybrid ... In order to solve the problem of semantic heterogeneity in information integration, an ontology based semantic information integration (OSII) model and its logical framework are proposed. The OSII adopts the hybrid ontology approach and uses OWL (web ontology language) as the ontology language. It obtains unified views from multiple sources by building mappings between local ontologies and the global ontology. A tree- based multi-strategy ontology mapping algorithm is proposed. The algorithm is achieved by the following four steps: pre-processing, name mapping, subtree mapping and remedy mapping. The advantages of this algorithm are: mapping in the compatible datatype categories and using heuristic rules can improve mapping efficiency; both linguistic and structural similarity are used to improve the accuracy of the similarity calculation; an iterative remedy is adopted to obtain correct and complete mappings. A challenging example is used to illustrate the validity of the algorithm. The OSII is realized to effectively solve the problem of semantic heterogeneity in information integration and to implement interoperability of multiple information sources. 展开更多
关键词 information integration semantic heterogeneity ontology ontology mapping
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Ontology mapping based on hidden Markov model 被引量:2
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作者 尹康银 宋自林 徐平 《Journal of Southeast University(English Edition)》 EI CAS 2007年第3期389-393,共5页
The existing ontology mapping methods mainly consider the structure of the ontology and the mapping precision is lower to some extent. According to statistical theory, a method which is based on the hidden Markov mode... The existing ontology mapping methods mainly consider the structure of the ontology and the mapping precision is lower to some extent. According to statistical theory, a method which is based on the hidden Markov model is presented to establish ontology mapping. This method considers concepts as models, and attributes, relations, hierarchies, siblings and rules of the concepts as the states of the HMM, respectively. The models corresponding to the concepts are built by virtue of learning many training instances. On the basis of the best state sequence that is decided by the Viterbi algorithm and corresponding to the instance, mapping between the concepts can be established by maximum likelihood estimation. Experimental results show that this method can improve the precision of heterogeneous ontology mapping effectively. 展开更多
关键词 ontology heterogeneity ontology mapping hidden Markov model semantic web
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基于奇异值分解的中文Ontology自动学习技术 被引量:1
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作者 李守丽 廖乐健 幺敬国 《计算机工程》 CAS CSCD 北大核心 2003年第9期137-139,共3页
语义Web是一个美好的构想,Ontology在语义Web中起着举足轻重的作用,它不仅能为人类用户而且能为软件agent提供从语法层次到语义层次上的互操作性。目前Web上主要是各种布局的HTML文档,未来的语义Web页面将是各种领域Ontology的实例... 语义Web是一个美好的构想,Ontology在语义Web中起着举足轻重的作用,它不仅能为人类用户而且能为软件agent提供从语法层次到语义层次上的互操作性。目前Web上主要是各种布局的HTML文档,未来的语义Web页面将是各种领域Ontology的实例以及到其它实例上的链接,因此语义Web的成功强烈依赖于Ontology的增殖,方便快捷地构造各领域Ontologies是实现语义Web的关键。该文提出一种基于奇异值分解的中文Ontology自动学习技术,这种技术的特点是其简易性以及准确的数学理论基础。 展开更多
关键词 语义WEB ontology ontology学习 奇异值分解
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也谈关于Ontology的翻译 被引量:3
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作者 庞学铨 《浙江学刊》 CSSCI 2002年第4期116-122,共7页
如何翻译和理解Ontology这一重要概念 ,对研究西方哲学的存在理论关系极大 ,对它的理解又最终被归结为对tobe的理解。国内西方哲学界对此的看法历来有异 ,近年又有研究者认为以“是”来翻译和理解tobe最为准确。本文根据当代著名语言学... 如何翻译和理解Ontology这一重要概念 ,对研究西方哲学的存在理论关系极大 ,对它的理解又最终被归结为对tobe的理解。国内西方哲学界对此的看法历来有异 ,近年又有研究者认为以“是”来翻译和理解tobe最为准确。本文根据当代著名语言学、哲学史专家美国学者卡恩的研究成果 ,讨论了tobe本来具有的多种用法、多重涵义。认为它的一种主要和基本的用法 ,是作系动词用 ,表示“是”的意义 ;即使在作为系动词用时 ,它也可以表示“是者”、“存在” ,包含“是者”、“存在”的意义 ;它究竟表示“是”还是“存在”或别的意义 ,要看使用它的不同时代、不同语境和不同哲学家 ;而tobe所含有的“存在”的意义 ,在不同的形而上学理论中 ,又有差异 ,有的指本体意义的“存在” ,有的指实存意义上的“存在” ,有的则指自身显现意义上的“存在”。因此 ,对Ontology的翻译和理解 ,也应该视不同情形而定。 展开更多
关键词 ontology 翻译 西方哲学 ontology概念 存在论 本体论
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New automated ontology mapping algorithm 被引量:1
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作者 李选如 何洁月 《Journal of Southeast University(English Edition)》 EI CAS 2006年第3期348-352,共5页
A new algorithm for automated ontology mapping based on linguistic similarity and structure similarity is presented. First, the concept of WordNet is turned into a vector, then the similarity of two entities is calcul... A new algorithm for automated ontology mapping based on linguistic similarity and structure similarity is presented. First, the concept of WordNet is turned into a vector, then the similarity of two entities is calculated according to the cosine of the angle between the corresponding vectors. Secondly, based on the linguistic similarity, a weighted function and a sigmoid function can be used to combine the linguistic similarity and structure similarity to compute the similarity of an ontology. Experimental results show that the matching ratio can reach 63% to 70% and it can effectively accomplish the mapping between ontologies. 展开更多
关键词 ontology ontology mapping semantic web
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