As climate change,international trade,and human activities increasingly disrupt traditional geographic barriers in the oceans,non-indigenous species(NIS)have successfully established themselves outside their native ra...As climate change,international trade,and human activities increasingly disrupt traditional geographic barriers in the oceans,non-indigenous species(NIS)have successfully established themselves outside their native ranges.Outbreaks of NIS can pose significant threats to local ecosystems and economies,making them a critical issue for marine biodiversity and biosecurity.Biological invasions in marine habitats differ significantly from those on land or in freshwater.Detection and identification of NIS in marine habitats is particularly challenging due to difficulties in sampling,morphological identification,and visualization in the early stages of outbreaks.Environmental DNA(eDNA)approaches have emerged as reliable and cost-effective methods for both qualitative and quantitative detection of marine NIS,particularly in the introductory phase.In this review,we summarize recent applications and advances in eDNA-based detection of marine NIS.We emphasize that innovations in eDNA sampling equipment,improvements in detection methods,and further refinement of the reference genomic database for marine species are crucial for the future development of this field.展开更多
A population of the invasive mussel Arcuatula senhousia(Benson in Cantor,1842)was monitored seasonally(May,July and October 2015)in the Varano lagoon,the largest brackish basin of Southern Italy,within the Gargano Nat...A population of the invasive mussel Arcuatula senhousia(Benson in Cantor,1842)was monitored seasonally(May,July and October 2015)in the Varano lagoon,the largest brackish basin of Southern Italy,within the Gargano National Park,Central Adriatic Sea,in order to give information on the abundance,wet weight and frequency classes.The data were collected during a survey carried within the framework of the Regional Project FEP Apulia 2007/2013 “Identificazione di misure per una migliore gestione e conservazione della risorsa vongola nel lago di Varano(FG)”.Summer anoxia may have reduced the mussel population,resulting in less abundance,wet weight and average size in October than in July and May.In particular,about length data,two cohorts were observed in May and October 2015,while a modal distribution in July 2015.展开更多
Our objective was to determine the role of two invasive bivalves on the concentration of ammonium as well as pH within intertidal surface sediments (0 - 3 and 3 - 6 cm depth) and interstitial waters, within the contex...Our objective was to determine the role of two invasive bivalves on the concentration of ammonium as well as pH within intertidal surface sediments (0 - 3 and 3 - 6 cm depth) and interstitial waters, within the context of a warming environment. To meet this objective we applied both controlled laboratory (microcosm) and field (mesocosm) experiments where we varied bivalve presence and absence and sediment temperature. Mesocosm sampling was tide dependent as we attempted to capture changes in ammonium concentration and pH as related to flood and ebb tide. We focused on ammonium as this nutrient is typically a limiting nutrient in oceanic systems and its cycling is a key process that regulates biological productivity. We also determined pH because of the increasing threat of ocean acidification. Integration of laboratory and field studies suggests that bivalves significantly contribute to ammonium to the intertidal with this amount increasing with increasing temperature. This ammonium is then released from the sediment as a “pulse” to overlying seawater on the flood tide. Under laboratory conditions, increased temperature and density of bivalves decreased overlying water pH. Mesocosm studies suggested some tide dependence of pH with flood tide acting as a buffer, increasing pH on the flood tide, after sediment exposure during ebb tide. Increased numbers of invasive bivalves within a warming environment are likely to increase amounts of ammonium released as a pulse on flood tides from intertidal ecosystems making this region a source of ammonium to coastal seas. Greater numbers of non-indigenous bivalves within the intertidal could also contribute to increased acidity within these regions although the significance of such increases is unknown.展开更多
Through the widespread implementation of next-generation sequencing （NGS）, analyses of the whole genome （the entire DNA content） and the whole transcriptome （the genes being expressed） are becoming commonplace. ...Through the widespread implementation of next-generation sequencing （NGS）, analyses of the whole genome （the entire DNA content） and the whole transcriptome （the genes being expressed） are becoming commonplace. NGS enables the analysis of a vast amount of previously unattainable genetic information. Despite this potential, NGS has yet to be widely imple- mented in genetic studies of biological invasions. The study of the genomic causes and consequences of biological invasions al- lows a deeper understanding of the molecular mechanisms underpinning the invasion process. In this review, we present a brief introduction to NGS followed by a synthesis of current research in the genomics and transcriptomics of adaptation and coloniza- tion. We then highlight research opportunities in the field, including： （1） assembling genomes and transcriptomes of non-model organisms, （2） identifying genomic regions and candidate genes underlying evolutionary processes, and （3） studying the adaptive role of gene expression variation. In particular, because introduced species face a broad range of physiological and biotic chal- lenges when colonizing novel and variable environments, transcriptomics will enable the study of gene regulatory pathways that may be responsible for acclimation or adaptation. To conclude, we identify a number of research approaches that will aid our fu- ture understanding of biological invasions展开更多
Environmental DNA(eDNA)metabarcoding has emerged as a potentially powerful tool to monitor invasive fish species.As an alternative(or complementary)tool for biodiversity monitoring,e DNA metabarcoding had been used to...Environmental DNA(eDNA)metabarcoding has emerged as a potentially powerful tool to monitor invasive fish species.As an alternative(or complementary)tool for biodiversity monitoring,e DNA metabarcoding had been used to detect species in aquariums,which represents an important transit avenue for introducing non-indigenous species with high population densities.In this study,eDNA metabarcoding as well as morphological characterization were used to reveal the diversity of non-indigenous species in a large aquarium at Qingdao Underwater World.Environmental DNA metabarcoding of 14 water samples at five locations from the Big Water Tank detected 24 non-indigenous species and four putative non-indigenous operational taxonomic units(OTUs).In contrast,only 20 non-indigenous species were observed by morphological characterization.Some species undetected by morphological characterization,such as Oreochromis niloticus(Linnaeus,1758),are highly adaptable to various environments and/or have invaded preferred regions where they threaten native aquatic species.eDNA metabarcoding also detected seven local fishes that were not identified by morphological characterization.However,analysis of OTU diversity among stations and sample replications revealed that eDNA varied within and/or between stations.Increasing sampling effort as well as negative controls are required to increase the detection rate of species and to eliminate false-positive OTUs.展开更多
Molecular investigations have raised concerns about the ecological risks of green tides caused by alien Ulva species in new habitats.The green tide-forming species U.californica Wille was generally considered to be na...Molecular investigations have raised concerns about the ecological risks of green tides caused by alien Ulva species in new habitats.The green tide-forming species U.californica Wille was generally considered to be native to North America,but new records have been widely reported in Europe,Asia,and Oceania in recent decades,indicating a strong dispersal capacity of the species.In this study,the first record of U.californica on the coastline of China's Mainland was reported,following a combined identification with multi-molecular markers and morphological characterization.It was shown that this species has a discontinuous distribution pattern along the coast of China's Mainland,with northern populations in the Yellow Sea and southern populations in the East China Sea and South China Sea.According to results of examination for life cycles and identification with mating type(MT)genetic markers,it was indicated that all U.californica samples were male gametophytes,and reproduced themselves through parthenogenesis solely.Combined with the fact that southern and northern populations are highly genetically identical,here we believed that U.californica was a recent alien species to China's Mainland with a rapid local spread.This finding provided evidences that the ability to reproduce in a variety of ways may play an important role in the spread of Ulva species,as well as essential basic data for marine risk management of green tides in China.In addition,according to the phylogeographic analysis,the possible geographical origin and global dispersal routes of U.californica were also proposed.展开更多
The study of ACE gene I/D polymorphism has been carried out in elderly, senile and long-liver patients with coronary heart disease (CHD) taking into account their nationality, age and sex. It has been recorded that wi...The study of ACE gene I/D polymorphism has been carried out in elderly, senile and long-liver patients with coronary heart disease (CHD) taking into account their nationality, age and sex. It has been recorded that with the increase of age there is a decrease in the frequency of the genotype ACE*I/*I and a tendency of increase in the frequency of the genotype ACE*D/*D. A comparative analysis of genotypes АСЕ*D/*D and АСЕ*D/*I has showed sex differences in the frequency of homozygous genotype detection. Left ventricular hypertrophy can be observed significantly more often among carriers of genotype ACE*I/*I established by Sokolow-Lyon ECG signs. Association analysis of ACE gene I/D polymorphism has registered significant differences in BMI and blood lipid parameters.展开更多
As a result of research, high prevalence of arterial hypertension has been identified in the group of patients with coronary heart disease aged 60 and older. Most often, occurring form of arterial hypertension among g...As a result of research, high prevalence of arterial hypertension has been identified in the group of patients with coronary heart disease aged 60 and older. Most often, occurring form of arterial hypertension among geriatric patients is isolated systolic arterial hypertension (ISAH). The comparison of two ethnic groups of the population has showed higher levels of systolic and diastolic blood pressure (SBP and DBP) in the group of patients of non-indigenous nationality, rather than Yakut patients. Correlation was recorded in the group of non-indigenous patients as they age. Significant increase in the level of SBP was identified in the group of senile and long-livers than in the elderly. Detection of ECG signs of LVH showed the lowest specificity of Cornell voltage criterion comparing to Sokolow-Lyon criterion with its more often occurrence. ECG-signs of left ventricle hypertrophy are significantly more often established by Sokolow-Lyon criterion for men, Cornell voltage—for women. Correlation has been found between the presence of LVH and combination of Cornell voltage criterion with both Gubner-Ungerleider and Sokolow-Lyon criteria.展开更多
Species invasions threaten marine biodiversity globally. There is a concern that climate change is exacerbating this problem. Here, we examined some of the potential effects of warming water temperatures on the invasi...Species invasions threaten marine biodiversity globally. There is a concern that climate change is exacerbating this problem. Here, we examined some of the potential effects of warming water temperatures on the invasion of Western Atlantic habitats by a marine predator, the Indo-Pacific lionfish （Pterois volitans and P. miles）. We focussed on two temperature-dependent aspects of lionfish life-history and behaviour： pelagic larval duration, because of its link to dispersal potential, and prey consump- tion rate, because it is an important determinant of the impacts of lionfish on native prey. Using models derived from fundamental metabolic theory, we predict that the length of time spent by lionfish in the plankton in early life should decrease with warming temperatures, with a concomitant reduction in potential dispersal distance. Although the uncertainty around change in dispersal distances is large, predicted reductions are, on average, more than an order of magnitude smaller than the current rate of range expansion of lionfisli in the Caribbean. Nevertheless, because shorter pelagic larval duration has the potential to increase local re- tention of larvae, local lionfish management will become increasingly important under projected climate change. Increasing tem- perature is also expected to worsen the current imbalance between rates of prey consumption by lionfish and biomass production by their prey, leading to a heightened decline in native reef fish biomass. However, the magnitude of climate-induced decline is predicted to be minor compared to the effect of current rates of lionfish population increases （and hence overall prey consumption rates） on invaded reefs. Placing the predicted effects of climate change in the current context thus reveals that, at least for the lionfish invasion, the threat is clear and present, rather than future [Current Zoology 58 （1）： 1-8, 2012].展开更多
Leafy spurge （Euphorbia esula L.） has substantial negative effects on grassland biodiversity, productivity, and economic benefit in North America. To predict these negative impacts, we need an appropriate plant-spre...Leafy spurge （Euphorbia esula L.） has substantial negative effects on grassland biodiversity, productivity, and economic benefit in North America. To predict these negative impacts, we need an appropriate plant-spread model which can simulate the response of an invading population to different control strategies. In this study, using a stochastic map lattice approach we generated a spatially explicitly stochastic process-based model to simulate dispersal trajectories of leafy spurge under various control scenarios. The model integrated dispersal curve, propagule pressure, and population growth of leafy spurge at local and short-temporal scales to capture spread features of leafy spurge at large spatial and long-temporal scales. Our results suggested that narrow-, medium-, and fat-tailed kernels did not differ in their ability to predict spread, in contrast to previous works. For all kernels, Allee effects were significantly present and could explain the lag phase （three decades） before leafy spurge spread accelerated. When simulating from the initial stage of introduction, Allee effects were critical in predicting spread rate of leafy spurge, because the prediction could be seriously affected by the low density period of leafy spurge community. No Allee effects models were not able to simulate spread rate well in this circumstance. When applying control strategies to the current distribution, Allee effects could stop the spread of leafy spurge; no Allee effects models, however, were able to slow but not stop the spread. The presence of Allee effects had significant ramifications on the efficiencies of control strategies. For both Allee and no Allee effects models, the later that control strategies were implemented, the more effort had to be input to achieve similar control results.展开更多
文摘As climate change,international trade,and human activities increasingly disrupt traditional geographic barriers in the oceans,non-indigenous species(NIS)have successfully established themselves outside their native ranges.Outbreaks of NIS can pose significant threats to local ecosystems and economies,making them a critical issue for marine biodiversity and biosecurity.Biological invasions in marine habitats differ significantly from those on land or in freshwater.Detection and identification of NIS in marine habitats is particularly challenging due to difficulties in sampling,morphological identification,and visualization in the early stages of outbreaks.Environmental DNA(eDNA)approaches have emerged as reliable and cost-effective methods for both qualitative and quantitative detection of marine NIS,particularly in the introductory phase.In this review,we summarize recent applications and advances in eDNA-based detection of marine NIS.We emphasize that innovations in eDNA sampling equipment,improvements in detection methods,and further refinement of the reference genomic database for marine species are crucial for the future development of this field.
文摘A population of the invasive mussel Arcuatula senhousia(Benson in Cantor,1842)was monitored seasonally(May,July and October 2015)in the Varano lagoon,the largest brackish basin of Southern Italy,within the Gargano National Park,Central Adriatic Sea,in order to give information on the abundance,wet weight and frequency classes.The data were collected during a survey carried within the framework of the Regional Project FEP Apulia 2007/2013 “Identificazione di misure per una migliore gestione e conservazione della risorsa vongola nel lago di Varano(FG)”.Summer anoxia may have reduced the mussel population,resulting in less abundance,wet weight and average size in October than in July and May.In particular,about length data,two cohorts were observed in May and October 2015,while a modal distribution in July 2015.
文摘Our objective was to determine the role of two invasive bivalves on the concentration of ammonium as well as pH within intertidal surface sediments (0 - 3 and 3 - 6 cm depth) and interstitial waters, within the context of a warming environment. To meet this objective we applied both controlled laboratory (microcosm) and field (mesocosm) experiments where we varied bivalve presence and absence and sediment temperature. Mesocosm sampling was tide dependent as we attempted to capture changes in ammonium concentration and pH as related to flood and ebb tide. We focused on ammonium as this nutrient is typically a limiting nutrient in oceanic systems and its cycling is a key process that regulates biological productivity. We also determined pH because of the increasing threat of ocean acidification. Integration of laboratory and field studies suggests that bivalves significantly contribute to ammonium to the intertidal with this amount increasing with increasing temperature. This ammonium is then released from the sediment as a “pulse” to overlying seawater on the flood tide. Under laboratory conditions, increased temperature and density of bivalves decreased overlying water pH. Mesocosm studies suggested some tide dependence of pH with flood tide acting as a buffer, increasing pH on the flood tide, after sediment exposure during ebb tide. Increased numbers of invasive bivalves within a warming environment are likely to increase amounts of ammonium released as a pulse on flood tides from intertidal ecosystems making this region a source of ammonium to coastal seas. Greater numbers of non-indigenous bivalves within the intertidal could also contribute to increased acidity within these regions although the significance of such increases is unknown.
文摘Through the widespread implementation of next-generation sequencing （NGS）, analyses of the whole genome （the entire DNA content） and the whole transcriptome （the genes being expressed） are becoming commonplace. NGS enables the analysis of a vast amount of previously unattainable genetic information. Despite this potential, NGS has yet to be widely imple- mented in genetic studies of biological invasions. The study of the genomic causes and consequences of biological invasions al- lows a deeper understanding of the molecular mechanisms underpinning the invasion process. In this review, we present a brief introduction to NGS followed by a synthesis of current research in the genomics and transcriptomics of adaptation and coloniza- tion. We then highlight research opportunities in the field, including： （1） assembling genomes and transcriptomes of non-model organisms, （2） identifying genomic regions and candidate genes underlying evolutionary processes, and （3） studying the adaptive role of gene expression variation. In particular, because introduced species face a broad range of physiological and biotic chal- lenges when colonizing novel and variable environments, transcriptomics will enable the study of gene regulatory pathways that may be responsible for acclimation or adaptation. To conclude, we identify a number of research approaches that will aid our fu- ture understanding of biological invasions
基金supported by the National Key R&D Program of China(Nos.2018YFD0900301,2019YFD0901301)the National Natural Science Foundation of China(No.41776171)。
文摘Environmental DNA(eDNA)metabarcoding has emerged as a potentially powerful tool to monitor invasive fish species.As an alternative(or complementary)tool for biodiversity monitoring,e DNA metabarcoding had been used to detect species in aquariums,which represents an important transit avenue for introducing non-indigenous species with high population densities.In this study,eDNA metabarcoding as well as morphological characterization were used to reveal the diversity of non-indigenous species in a large aquarium at Qingdao Underwater World.Environmental DNA metabarcoding of 14 water samples at five locations from the Big Water Tank detected 24 non-indigenous species and four putative non-indigenous operational taxonomic units(OTUs).In contrast,only 20 non-indigenous species were observed by morphological characterization.Some species undetected by morphological characterization,such as Oreochromis niloticus(Linnaeus,1758),are highly adaptable to various environments and/or have invaded preferred regions where they threaten native aquatic species.eDNA metabarcoding also detected seven local fishes that were not identified by morphological characterization.However,analysis of OTU diversity among stations and sample replications revealed that eDNA varied within and/or between stations.Increasing sampling effort as well as negative controls are required to increase the detection rate of species and to eliminate false-positive OTUs.
基金Supported by the Science&Technology Basic Resources Investigation Program of China(No.2018FY100205)the National Natural Science Foundation of China(No.41776153)+3 种基金the Key Deployment Project of Centre for Ocean Mega-Research of ScienceChinese Academy of Science(No.COMS2019Q05)the Key R&D Program of Shandong Province(No.2019GSF107012)the Strategic Priority Research Program of the Chinese Academy of Sciences(No.XDA23050302)。
文摘Molecular investigations have raised concerns about the ecological risks of green tides caused by alien Ulva species in new habitats.The green tide-forming species U.californica Wille was generally considered to be native to North America,but new records have been widely reported in Europe,Asia,and Oceania in recent decades,indicating a strong dispersal capacity of the species.In this study,the first record of U.californica on the coastline of China's Mainland was reported,following a combined identification with multi-molecular markers and morphological characterization.It was shown that this species has a discontinuous distribution pattern along the coast of China's Mainland,with northern populations in the Yellow Sea and southern populations in the East China Sea and South China Sea.According to results of examination for life cycles and identification with mating type(MT)genetic markers,it was indicated that all U.californica samples were male gametophytes,and reproduced themselves through parthenogenesis solely.Combined with the fact that southern and northern populations are highly genetically identical,here we believed that U.californica was a recent alien species to China's Mainland with a rapid local spread.This finding provided evidences that the ability to reproduce in a variety of ways may play an important role in the spread of Ulva species,as well as essential basic data for marine risk management of green tides in China.In addition,according to the phylogeographic analysis,the possible geographical origin and global dispersal routes of U.californica were also proposed.
文摘The study of ACE gene I/D polymorphism has been carried out in elderly, senile and long-liver patients with coronary heart disease (CHD) taking into account their nationality, age and sex. It has been recorded that with the increase of age there is a decrease in the frequency of the genotype ACE*I/*I and a tendency of increase in the frequency of the genotype ACE*D/*D. A comparative analysis of genotypes АСЕ*D/*D and АСЕ*D/*I has showed sex differences in the frequency of homozygous genotype detection. Left ventricular hypertrophy can be observed significantly more often among carriers of genotype ACE*I/*I established by Sokolow-Lyon ECG signs. Association analysis of ACE gene I/D polymorphism has registered significant differences in BMI and blood lipid parameters.
文摘As a result of research, high prevalence of arterial hypertension has been identified in the group of patients with coronary heart disease aged 60 and older. Most often, occurring form of arterial hypertension among geriatric patients is isolated systolic arterial hypertension (ISAH). The comparison of two ethnic groups of the population has showed higher levels of systolic and diastolic blood pressure (SBP and DBP) in the group of patients of non-indigenous nationality, rather than Yakut patients. Correlation was recorded in the group of non-indigenous patients as they age. Significant increase in the level of SBP was identified in the group of senile and long-livers than in the elderly. Detection of ECG signs of LVH showed the lowest specificity of Cornell voltage criterion comparing to Sokolow-Lyon criterion with its more often occurrence. ECG-signs of left ventricle hypertrophy are significantly more often established by Sokolow-Lyon criterion for men, Cornell voltage—for women. Correlation has been found between the presence of LVH and combination of Cornell voltage criterion with both Gubner-Ungerleider and Sokolow-Lyon criteria.
文摘Species invasions threaten marine biodiversity globally. There is a concern that climate change is exacerbating this problem. Here, we examined some of the potential effects of warming water temperatures on the invasion of Western Atlantic habitats by a marine predator, the Indo-Pacific lionfish （Pterois volitans and P. miles）. We focussed on two temperature-dependent aspects of lionfish life-history and behaviour： pelagic larval duration, because of its link to dispersal potential, and prey consump- tion rate, because it is an important determinant of the impacts of lionfish on native prey. Using models derived from fundamental metabolic theory, we predict that the length of time spent by lionfish in the plankton in early life should decrease with warming temperatures, with a concomitant reduction in potential dispersal distance. Although the uncertainty around change in dispersal distances is large, predicted reductions are, on average, more than an order of magnitude smaller than the current rate of range expansion of lionfisli in the Caribbean. Nevertheless, because shorter pelagic larval duration has the potential to increase local re- tention of larvae, local lionfish management will become increasingly important under projected climate change. Increasing tem- perature is also expected to worsen the current imbalance between rates of prey consumption by lionfish and biomass production by their prey, leading to a heightened decline in native reef fish biomass. However, the magnitude of climate-induced decline is predicted to be minor compared to the effect of current rates of lionfish population increases （and hence overall prey consumption rates） on invaded reefs. Placing the predicted effects of climate change in the current context thus reveals that, at least for the lionfish invasion, the threat is clear and present, rather than future [Current Zoology 58 （1）： 1-8, 2012].
基金funded by the Integrating Economics and Biology for Bioeconomic Risk Assessment/Management of Invasive Species in Agriculture (Economic Research Service/USDA)
文摘Leafy spurge （Euphorbia esula L.） has substantial negative effects on grassland biodiversity, productivity, and economic benefit in North America. To predict these negative impacts, we need an appropriate plant-spread model which can simulate the response of an invading population to different control strategies. In this study, using a stochastic map lattice approach we generated a spatially explicitly stochastic process-based model to simulate dispersal trajectories of leafy spurge under various control scenarios. The model integrated dispersal curve, propagule pressure, and population growth of leafy spurge at local and short-temporal scales to capture spread features of leafy spurge at large spatial and long-temporal scales. Our results suggested that narrow-, medium-, and fat-tailed kernels did not differ in their ability to predict spread, in contrast to previous works. For all kernels, Allee effects were significantly present and could explain the lag phase （three decades） before leafy spurge spread accelerated. When simulating from the initial stage of introduction, Allee effects were critical in predicting spread rate of leafy spurge, because the prediction could be seriously affected by the low density period of leafy spurge community. No Allee effects models were not able to simulate spread rate well in this circumstance. When applying control strategies to the current distribution, Allee effects could stop the spread of leafy spurge; no Allee effects models, however, were able to slow but not stop the spread. The presence of Allee effects had significant ramifications on the efficiencies of control strategies. For both Allee and no Allee effects models, the later that control strategies were implemented, the more effort had to be input to achieve similar control results.
