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子宫内膜异位症患者细胞外基质相关基因筛选的生物信息学分析 被引量:8
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作者 李楠 陈蕾 +1 位作者 许天敏 张琨 《吉林大学学报(医学版)》 CAS CSCD 北大核心 2022年第1期188-194,共7页
目的:通过生物信息学工具筛选子宫内膜异位症(EMS)相关的差异表达基因(DEGs),为阐明EMS的病因提供理论依据,为EMS的诊断和治疗开辟新的研究方向。方法:从基因表达汇编(GEO)数据库检索“endmetriosis”,下载涉及EMS组织和正常子宫内膜组... 目的:通过生物信息学工具筛选子宫内膜异位症(EMS)相关的差异表达基因(DEGs),为阐明EMS的病因提供理论依据,为EMS的诊断和治疗开辟新的研究方向。方法:从基因表达汇编(GEO)数据库检索“endmetriosis”,下载涉及EMS组织和正常子宫内膜组织的高通量芯片数据集GSE25628,GSE23339和GSE7305。使用GE02R在线分析工具筛选EMS组织和正常子宫内膜组织的DEGs,使用基因本体功能注释(GO)和京都基因与基因组百科全书(KEGG)对DEGs进行功能及通路富集分析,利用STRING数据库建立蛋白-蛋白互作(PPI)网络,最后通过Cytoscape软件对PPI网络进行可视化并筛选核心基因。结果:分析确定了27个上调DEGs和43个下调DEGs。GO富集分析,DEGs主要富集于细胞外基质、细胞外空间和细胞外区域等方面;KEGG通路分析,DEGs主要富集于磷酸肌醇代谢信号通路。通过STRING数据库和Cytoscape软件共筛选出核心蛋白聚糖(DCN)、上皮细胞黏附分子(EPCAM)、双链蛋白聚糖(BGN)、脂肪酸结合蛋白4(FABP4)、神经酪氨酸激酶受体2(NTRK2)、磷脂酰肌醇聚糖3(GPC-3)、表皮生长因子受体3(ERBB3)、分化抗原簇蛋白24(CD24)、巢蛋白2(NID2)和血小板反应蛋白2(THBS2)连接度最高的前10个核心基因,其中DCN、BGN、NID2和THBS24种基因与细胞外基质的生物学功能有密切关联。结论:细胞外基质相关基因失调可能在EMS发生发展过程中起重要作用,且细胞外基质相关基因可能成为EMS早期诊断的生物标志物及治疗靶点。 展开更多
关键词 子宫内膜异位症 生物信息学 核心蛋白聚糖 双链蛋白聚糖 巢蛋白2 血小板反应蛋白2
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Diabetic vascular calcification inhibited by soluble epoxide hydrolase gene deletion via regressing NID2-mediated IGF2-ERK1/2 signaling pathway
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作者 Yueting Cai Shuiqing Hu +8 位作者 Jingrui Liu Jinlan Luo Wenhua Li Jiaxin Tang Siyang Liu Ruolan Dong Yan Yang Ling Tu Xizhen Xu 《Chinese Medical Journal》 2025年第20期2657-2668,共12页
Background:Epoxyeicosatrienoic acids(EETs),which are metabolites of arachidonic acid catalyzed by cytochrome P450 epoxygenase,are degraded into inactive dihydroxyeicosatrienoic acids by soluble epoxide hydrolase(sEH).... Background:Epoxyeicosatrienoic acids(EETs),which are metabolites of arachidonic acid catalyzed by cytochrome P450 epoxygenase,are degraded into inactive dihydroxyeicosatrienoic acids by soluble epoxide hydrolase(sEH).Many studies have revealed that sEH gene deletion exerts protective effects against diabetes.Vascular calcification is a common complication of diabetes,but the potential effects of sEH on diabetic vascular calcification are still unknown.Methods:The level of aortic calcification in wild-type and Ephx2^(−/−)C57BL/6 diabetic mice induced with streptozotocin was evaluated by measuring the aortic calcium content through alizarin red staining,immunohistochemistry staining,and immunofluorescence staining.Mouse vascular smooth muscle cell lines(MOVAS cells)treated with β-glycerol phosphate(0.01 mol/L)plus advanced glycation end products(50 mg/L)were used to investigate the effects of sEH inhibitors or sEH knockdown and EETs on the calcification of vascular smooth muscle cells,which was detected by Western blotting,alizarin red staining,and Von Kossa staining.Results:sEH gene deletion significantly inhibited diabetic vascular calcification by increasing levels of EETs in the aortas of mice.EETs(especially 11,12-EET and 14,15-EET)efficiently prevented the osteogenic transdifferentiation of MOVAS cells by decreasing nidogen-2(NID2)expression.Interestingly,suppressing sEH activity by small interfering ribonucleic acid or specific inhibitors did not block osteogenic transdifferentiation of MOVAS cells induced by β-glycerol phosphate and advanced glycation end products.NID2 overexpression significantly abolished the inhibitory effect of sEH gene deletion on diabetic vascular calcification.Moreover,NID2 overexpression mediated by adeno-associated virus 9 vectors markedly increased insulin-like growth factor 2(IGF2)and phospho-ERK1/2 expression in MOVAS cells.Overall,sEH gene knockout inhibited diabetic vascular calcification by decreasing aortic NID2 expression and,then,inactivating the downstream IGF2-ERK1/2 signaling pathway.Conclusions:sEH gene deletion markedly inhibited diabetic vascular calcification through repressed osteogenic transdifferentiation of vascular smooth muscle cells mediated by increased aortic EET levels,which was associated with decreased NID2 expression and inactivation of the downstream IGF2-ERK1/2 signaling pathway. 展开更多
关键词 Soluble epoxide hydrolase Epoxyeicosatrienoic acids Diabetic vascular calcification nidogen2 Insulin-like growth factor 2 Extracellular signal-regulated kinase 1/2
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