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Coarse-grained molecular dynamics simulations on self-assembly of polystyrene-block-poly(2-vinylpyridine)
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作者 Daiwen Li Shoutian Qiu +6 位作者 Gan Liu Ming Liu Mingjie Wei Shipeng Sun Weihong Xing Xiaohua Lu Yong Wang 《Chinese Journal of Chemical Engineering》 2025年第7期15-25,共11页
Self-assembly of block copolymers(BCPs)is highly intricate and is adsorbing extensive experimental and simulation efforts to reveal it for maximizing structural order and device performances.The coarse-grained(CG)mole... Self-assembly of block copolymers(BCPs)is highly intricate and is adsorbing extensive experimental and simulation efforts to reveal it for maximizing structural order and device performances.The coarse-grained(CG)molecular dynamics(MD)simulation offers a microscopic angle to view the self-assembly of BCPs.Although some molecular details are sacrificed during CG processes,this method exhibits remarkable computational efficiency.In this study,a comprehensive CG model for polystyrene-block-poly(2-vinylpyridine),PS-b-P2VP,one of the most extensively studied BCPs for its high Flory-Huggins interaction parameter,is constructed,with parameters optimized using target values derived from all-atom MD simulations.The CG model precisely coincides with various classical self-assembling morphologies observed in experimental studies,matching the theoretical phase diagrams.Moreover,the conformational asymmetry of the experimental phase diagram is also clearly revealed by our simulation results,and the phase boundaries obtained from simulations are highly consistent with experimental results.The CG model is expected to extend to simulate the self-assembly behaviors of other BCPs in addition to PS-b-P2VP,thus increasing understanding of the microphase separation of BCPs from the molecular level. 展开更多
关键词 Block copolymers self-assembly Martini force field POLYMERS Computer simulation molecular simulation
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Formation mechanism of herpetrione self-assembled nanoparticles based on p H-driven method 被引量:1
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作者 Yuwen Zhu Xiang Deng +4 位作者 Yan Wu Baode Shen Lingyu Hang Yuye Xue Hailong Yuan 《Chinese Chemical Letters》 2025年第1期387-391,共5页
The self-assembled nanoparticles(SAN)formed during the decoction process of traditional Chinese medicine(TCM)exhibit non-uniform particle sizes and a tendency for aggregation.Our group found that the p H-driven method... The self-assembled nanoparticles(SAN)formed during the decoction process of traditional Chinese medicine(TCM)exhibit non-uniform particle sizes and a tendency for aggregation.Our group found that the p H-driven method can improve the self-assembly phenomenon of Herpetospermum caudigerum Wall.,and the SAN exhibited uniform particle size and demonstrated good stability.In this paper,we analyzed the interactions between the main active compound,herpetrione(Her),and its main carrier,Herpetospermum caudigerum Wall.polysaccharide(HCWP),along with their self-assembly mechanisms under different p H values.The binding constants of Her and HCWP increase with rising p H,leading to the formation of Her-HCWP SAN with a smaller particle size,higher zeta potential,and improved thermal stability.While the contributions of hydrogen bonding and electrostatic attraction to the formation of Her-HCWP SAN increase with rising p H,the hydrophobic force consistently plays a dominant role.This study enhances our scientific understanding of the self-assembly phenomenon of TCM improved by p H driven method. 展开更多
关键词 Traditional Chinese medicine NANOPARTICLES Herpetrione Interaction pH-driven method self-assembly Isothermal titration calorimetry
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Selective formation of luminescent chiral cocrystal:Molecular self-assembly of 2,20-binaphthol and 2-(3-pyridyl)-1H-benzimidazole 被引量:3
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作者 Yanluo Lu Yanqun Tang +4 位作者 Heyang Lin Xiaoyu Fang Bo Lu Dan Li Dongpeng Yan 《Chinese Chemical Letters》 SCIE CAS CSCD 2018年第10期1541-1543,共3页
Luminescent cocrystals have been received much attention in fluorescence imaging and sensor application. In this work, we report that the high-quality chiral luminescent cocrystal can be obtained through a molecular s... Luminescent cocrystals have been received much attention in fluorescence imaging and sensor application. In this work, we report that the high-quality chiral luminescent cocrystal can be obtained through a molecular self-assembly process of 2,20-binaphthol and 2-(3-pyridyl)-1 H-benzimidazole. The assembly modes and stacking fashions of as-obtained cocrystal were determined by single crystal X-ray diffractometer. The structure and optical properties of the cocrystals were characterized by fluorescence emission, fluorescence decay, Raman and circular dichroism spectra. The results show that both the pristine co-assembled units(R-BINOL and S-BINOL) give rise to the R conformation within the final cocrystal, suggesting that the formation of cocrystal can be an effective way to achieve R/S-isomeric transformation of 2,20-binaphthol. It is also expected that the co-crystallization approach has much flexibility and potential applications for the design and selective formation of chiral luminescent materials. 展开更多
关键词 Chiral cocrystal molecular self-assembly BINAPHTHOL
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Nanostructured Columns from Self-assemblyof Complementary Molecular Components 被引量:1
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作者 YANG Wen-sheng ,YANG Bai-quan, JIANG Yue-shun and LI Tie-jin (Department of Chemistry, Jilin University, Changchun, 130023, P. R. China) LIU Ya-Juan (Institute of Information Technology, Jilin Agriculture University, Changchun, 130118, P. R. China) 《Chemical Research in Chinese Universities》 SCIE CAS CSCD 2001年第2期193-197,共5页
Nanostructured columns with a length about several tens of micrometer and a diameter of about 80 nm were obtained by molecular recognition directed self-assembly of a pair of comple- mentary molecular components, 4-a... Nanostructured columns with a length about several tens of micrometer and a diameter of about 80 nm were obtained by molecular recognition directed self-assembly of a pair of comple- mentary molecular components, 4-amino-2 , 6-didodecylamino-1 , 3, 5-triazine(M) and 5- (4-dode- cyloxybenzylidene )-(1H, 3H)-2, 4, 6-pyrimidinetrione (B) in chloroform. In this system, with positive cooperativity, π-aromatic stacking and van der Waals interactions as well as hydrogen bonds cause the formation of the nanocolumns. 展开更多
关键词 NANOCOLUMN self-assembly π-aromatic stacking molecular recognition
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Preparation of PVA/GO/h-BN Janus Film with High Thermal Conductivity and Excellent Flexibility via a Density Deposition Self-assembly Method 被引量:1
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作者 Fang-Hua Luo Zhi-Tao Dong +2 位作者 Guo-Hua Chen Chen Ma Huai-Yuan Wang 《Chinese Journal of Polymer Science》 SCIE EI CAS CSCD 2024年第8期1217-1226,共10页
Janus films with asymmetric physical/chemical properties have attracted con siderable attention due to their promising applications in personal thermal management,electronic skin s,sensors,actuators,etc.However,tradit... Janus films with asymmetric physical/chemical properties have attracted con siderable attention due to their promising applications in personal thermal management,electronic skin s,sensors,actuators,etc.However,traditional methods for fabricating Janus films conventionally need the assistance of an interface or auxiliary equipment,which are usually complex and time-consuming.Herein,flexible poly(vinyl alcohol)(PVA)/graphene oxide(GO)/h-BN(recorded as PVA/GO/h-BN)Janus films with thermally,optically,and electrically anisotropic properties are fabricated by a simple density deposition self-assem bly method,which just utilizes the density difference between GO and h-BN during water evaporation.Experimental results show that the two sides of the acquired Janus films have obvious asymmetric characteristics.In the original state of the PVA/GO/h-BN Janus films,the thermal conductivity of the GO side(10.06 W·m^(-1)·K^(-1))is generally lower than that of the h-BN side(10.48W·m^(-1)·K^(-1)).But after GO is reduced,the thermal conductivity of the rGO side reaches 12.17 W·m^(-1)·K^(-1),surpassing that of the h-BN side.In addition,the relative reflectance of the h-BN side of Janus film is also significantly higher than that of the rGO side,and the su rface resistance difference between the two sides is about 4 orders of magnitude.The prepared PVA/GO/h-BN Janus films show great application potential in human thermal management,light conversion switches,and electronic skins.This study provides a simple and versatile strategy for fabricating Janus films with multifunctional(such as thermal,optical,and electrical)anisotropies. 展开更多
关键词 Janus films PVA/GO/h-BN Density deposition self-assembly method
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Photo-regulation of 2D supramolecular self-assembly:On-surface photochemistry studied by STM 被引量:1
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作者 Hong-Liang Dai Yan-Fang Geng +1 位作者 Qing-Dao Zeng Chen Wang 《Chinese Chemical Letters》 SCIE CAS CSCD 2017年第4期729-737,共9页
During the past few years,regulation and controlling of the two-dimension(2D) self-assembled supramolecular structure on surface have drawn increasing attention in nanoscience and technology.External stimuli have be... During the past few years,regulation and controlling of the two-dimension(2D) self-assembled supramolecular structure on surface have drawn increasing attention in nanoscience and technology.External stimuli have been widely used to regulate these 2D nanostructures.Among various external stimuli approaches,photo-regulation as one of the most outstanding means of regulation has been extensively studied because different wave bands can lead to molecular conformation variation and new bonds to gain new molecules.In this review,the photo-regulated self-assembled structure on solid surface as well as the photo-reactions of different molecules substituted with photo-sensitive groups are introduced to give us an insight into on-surface photochemistry,which plays an important role on the nano-devices fabrication.Notably,these photo-sensitive behaviors as well as the formed structures on surface were probed at sub-molecule level by unique scanning tunneling microscopy(STM) technique. 展开更多
关键词 Scanning tunneling microscopy(STM) Photochemistry Light irradiation 2D self-assembly molecular template
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Differentiated self-assembly through orthogonal noncovalent interactions towards the synthesis of two-dimensional woven supramolecular polymers
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作者 Zhenzhu Wang Chenglong Liu +5 位作者 Yunpeng Ge Wencan Li Chenyang Zhang Bing Yang Shizhong Mao Zeyuan Dong 《Chinese Chemical Letters》 SCIE CAS CSCD 2024年第5期179-182,共4页
Molecular weaving is a powerful approach to make molecularly woven materials that have showed unprecedented characteristics and properties intrinsically distinct to those of non-woven materials.We here report a facile... Molecular weaving is a powerful approach to make molecularly woven materials that have showed unprecedented characteristics and properties intrinsically distinct to those of non-woven materials.We here report a facile and efficient approach for the synthesis of 2D woven supramolecular polymers by differentiated self-assembly through orthogonal noncovalent interactions.Importantly,the difference in binding strength of two orthogonal noncovalent interactions can be used to control the process of molecular weaving.Consequently,single-layered 2D woven supramolecular polymers were synthesized and fully characterized by various techniques.This study demonstrates a controllable method for molecular weaving,and will significantly hasten the development of molecularly woven materials. 展开更多
关键词 Differentiated self-assembly Double-stranded helix molecular weaving Supramolecular chemistry Two-dimensional polymer
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Fabrication of Au/SiO_(2) Nanocomposite Films by Self-Assembly Multilayer Method
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作者 HaihuYU HonghuiLI +2 位作者 DeshengJIANG XiaoyaoCHEN EnyuYANG 《Journal of Materials Science & Technology》 SCIE EI CAS CSCD 2004年第6期674-677,共4页
Gold colloid was prepared by chemical reduction of hydrogen tetrachloroaurate, polyelectrolyte/gold nanoparticle/silica nanoparticie composite films were fabricated via an electrostatic self-assembly multilayer method... Gold colloid was prepared by chemical reduction of hydrogen tetrachloroaurate, polyelectrolyte/gold nanoparticle/silica nanoparticie composite films were fabricated via an electrostatic self-assembly multilayer method, and composite films of gold nanoparticle dispersed in silica matrix were formed by heat-treating the polyelectrolyte/gold nanoparticle/silica nanoparticle composite films to eliminate the polyelectrolyte. The obtained composite films were investigated with UV-vis, TEM, AFM and XRD. The results show that the self-assembly multilayer method is a promising process to produce composite films of gold nanoparticle-dispersed in organic and/or inorganic matrixes. 展开更多
关键词 self-assembly multilayer method Gold nanoparticle SILICA Composite film
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A Facile Self-assembly Synthesis of Hexagonal ZnO Nanosheet Films and Their Photoelectrochemical Properties 被引量:3
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作者 Bin Zhang Faze Wang +5 位作者 Changqing Zhu Qiang Li Jingnan Song Maojun Zheng Li Ma Wenzhong Shen 《Nano-Micro Letters》 SCIE EI CAS 2016年第2期137-142,共6页
Here, large-scale and uniform hexagonal zinc oxide(ZnO) nanosheet films were deposited onto indium tin oxide(ITO)-coated transparent conducting glass substrates via a facile galvanic displacement deposition process. C... Here, large-scale and uniform hexagonal zinc oxide(ZnO) nanosheet films were deposited onto indium tin oxide(ITO)-coated transparent conducting glass substrates via a facile galvanic displacement deposition process. Compared with other commonly used solution methods, this process avoids high temperature and electric power as well as supporting agents to make it simple and cost-effective. The as-fabricated ZnO nanosheet films have uniform hexagonal wurtzite structure. The photoelectrochemical(PEC) cell based on ZnO nanosheet film/ITO photoelectrode was also fabricated and its performance was improved by optimizing the solution concentration. A higher photocurrent density of*500 l A cm^(-2)under AM 1.5 G simulated illumination of 100 m W cm^(-2)with zero bias potential(vs. Ag/AgCl electrode) was obtained, which may ascribe to the increased surface-to-volume ratio of disordered Zn O nanosheet arrays. Our developed method may be used to deposit other oxide semiconductors, and the Zn O nanosheet film/ITO PEC cell can be used to design low-cost optoelectronic and photoelectrochemical devices. 展开更多
关键词 Zinc oxide NANOSHEET film self-assemblE Galvanic displacement method PHOTOELECTROCHEMICAL property
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COMPUTERIZED SIMULATION OF MOLTEN SALT SOLUTION OF Li,KF,Cl SYSTEM BY MOLECULAR DYNAMIC METHOD 被引量:2
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作者 SHAO Jun Shanghai University of Science and Technology,Shanghai,ChinaXU Hua CHEN Nianyi Shanghai Institute of Metallurgy,Academia Sinica,Shanghai,China SHAO Jun Associate Professor,Dept.of Chemistry,Shanghai University of Science and Technology,Shanghai 201800,China 《Acta Metallurgica Sinica(English Letters)》 SCIE EI CAS CSCD 1990年第10期221-225,共5页
The structure and properties of molten salt solution o J Li,K|F,Cl system have been investiged by computerized simulation of molecular dynamic method.The partial RDF,the partial molar energy of mixing and the diffusio... The structure and properties of molten salt solution o J Li,K|F,Cl system have been investiged by computerized simulation of molecular dynamic method.The partial RDF,the partial molar energy of mixing and the diffusion coeffients of Li^+,K^+,F^- and Cl^- have been calculated. The results are in agreement with the experimental values.The regularities of the distribution of ions and mieroscopic holes are discussed based on the results of computerized simulation. 展开更多
关键词 alkali halide molten salt molecular dynamic method computerized simulation
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Adaptive hp finite element method for fluorescence molecular tomography with simplified spherical harmonics approximation 被引量:4
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作者 Hongbo Guo Yuqing Hou +3 位作者 Xiaowei He Jingjing Yu Jingxing Cheng Xin Pu 《Journal of Innovative Optical Health Sciences》 SCIE EI CAS 2014年第2期70-81,共12页
Recently,the simplified spherical harmonics equations(SP)model has at tracted much att entionin modeling the light propagation in small tissue ggeometriesat visible and near-infrared wave-leng ths.In this paper,we rep... Recently,the simplified spherical harmonics equations(SP)model has at tracted much att entionin modeling the light propagation in small tissue ggeometriesat visible and near-infrared wave-leng ths.In this paper,we report an eficient numerical method for fluorescence moleeular tom-ography(FMT)that combines the advantage of SP model and adaptive hp finite elementmethod(hp-FEM).For purposes of comparison,hp-FEM and h-FEM are,respectively applied tothe reconstruction pro cess with diffusion approximation and SPs model.Simulation experiments on a 3D digital mouse atlas and physical experiments on a phantom are designed to evaluate thereconstruction methods in terms of the location and the reconstructed fluorescent yield.Theexperimental results demonstrate that hp-FEM with SPy model,yield more accurate results thanh-FEM with difusion approximation model does.The phantom experiments show the potentialand feasibility of the proposed approach in FMT applications. 展开更多
关键词 Fluorescence molecular tomog maphy simplified spherical harmonics equations RECONSTRUCTION adaptive finite element method.
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Clinical Observation on Treatment of 78 Patients of B-Thalassemla with Bushen Ylsul (补肾益髓) Method and Study on Its Molecular Mechanism 被引量:6
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作者 吴志奎 蔡辉国 +7 位作者 方素萍 张新华 王蕾 陈玉英 吕鑫霞 黄有文 王荣新 陈佩珍 《Chinese Journal of Integrated Traditional and Western Medicine》 2003年第2期141-141,共1页
Objective: To study the treatment of B-Thalas-semia (ThE) with Chinese herbal medicine for Bushen Yisui (BSYS), its theoretical base and molecular mechanism. Methods: Seventy-eight patients with ThE were treated with ... Objective: To study the treatment of B-Thalas-semia (ThE) with Chinese herbal medicine for Bushen Yisui (BSYS), its theoretical base and molecular mechanism. Methods: Seventy-eight patients with ThE were treated with BSYS recipe (consisted of 11 Chinese herbal drugs as Dogwood fruit, Fleeceflower root, prepared Rehmannia root and turtle shell, etc.) orally taken, 3 times per day, 10 g/time, 3 months as one therapeutic course. Hemoglobin (Hb), red blood cell (RBC), reticulocyte (Ret) and hemoglobin F (HbF) were checked every month. At the same time, PAGE, PVR, PCR-SSCP, RT-PCR, DNA series analysis, mRNA gene expression analysis techniques were used to conduct the systematic gene analysis in patients to study the molecular mechanism of TCM treatment from aspects of gene mutation, gene expression and control-regulation. Results: All the blood criteria in patients after BSYS treatment were improved significantly with clinical symptoms 展开更多
关键词 of in gene method and Study on Its molecular Mechanism Clinical Observation on Treatment of 78 Patients of B-Thalassemla with Bushen Ylsul HbF on with
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Molecular Component Structures MediatedFormation of Self-assemblies 被引量:1
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作者 YANG Wen-sheng , LU Ran, TANG Xin-yi and LI Tie-jin (Department of Chemistry, Jilin University, Changchun 130023, P. R. China) FU Lian-she and ZHANG Hong-jie (Changchun Institute of Applied Chemistry, Academia Sinica, Changchun 130022, P. R. China) 《Chemical Research in Chinese Universities》 SCIE CAS CSCD 2001年第2期198-201,共4页
Molecular recognition directed self-assemblies from complementary molecular components, melamine and barbituric acid derivatives were studied by means of NMR, fluorescence, and TEM. It was found that both the process ... Molecular recognition directed self-assemblies from complementary molecular components, melamine and barbituric acid derivatives were studied by means of NMR, fluorescence, and TEM. It was found that both the process of the self-assembly and the morphologies of the result- ed self-assemblies could be mediated by modifying the structures of the molecular components used. The effect of the structures of the molecular components on the formation of the self-as- semblies was discussed in terms of intermolecular interactions. 展开更多
关键词 Intermolecular interaction molecular recognition MELAMINE Barbituric acid derivative self-assembly
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Pillar[5]arene-based [3]rotaxanes: Convenient construction via multicomponent reaction and pH responsive self-assembly in water 被引量:1
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作者 Junmei Ye Runmiao Zhan +5 位作者 Wenjuan Yang Ying Han Hao Guo Ju Xie Chaoguo Yan Yong Yao 《Chinese Chemical Letters》 SCIE CAS CSCD 2020年第6期1550-1553,共4页
Four pillar[5]arene based[3]rotaxanes(1-4)involving two 1,4-diethoxypillar[5]arene(DEP5)rings and a dumbbell-shaped component were successfully synthesized.The dumbbell-shape molecules contain one longer bridge,two tr... Four pillar[5]arene based[3]rotaxanes(1-4)involving two 1,4-diethoxypillar[5]arene(DEP5)rings and a dumbbell-shaped component were successfully synthesized.The dumbbell-shape molecules contain one longer bridge,two triazole sites and two multicomponent stoppers.After threading DEP5 rings with linear vips(G1-G4)which contain two benzaldehyde units,the base catalyzed three-component reaction of dimedone,malononitrile and benzaldehyde was performed to construct the stoppers and connected the pseudorotaxanes with stoppers to generate 1-4.The structures of[3]rotaxanes and their self-assembly behaviors were characterized by 1 H NMR,13C NMR,NOESY,HR-ESI-MS,DLS and TEM technologies.We hope that pillar[5]arene based[3]rotaxanes may have potential applications in drug delivery systems and molecular devices. 展开更多
关键词 arene Rotaxane Multicomponent reaction molecular machine self-assembly
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A Modified Molecular Structural Mechanics Method for Analysis of Carbon Nanotubes 被引量:1
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作者 Ming-yuan Huang Hai-bo Chen +2 位作者 Ji-nan Lü Pin Lü Pei-qiang Zhang 《Chinese Journal of Chemical Physics》 SCIE CAS CSCD 北大核心 2006年第4期286-290,共5页
A modified molecular structural mechanics method, based on molecular mechanics and similar to the finite element method, was developed. The energy of a system was expressed by the force field functions of the molecula... A modified molecular structural mechanics method, based on molecular mechanics and similar to the finite element method, was developed. The energy of a system was expressed by the force field functions of the molecular mechanics. Under the small deformation assumption and by the principle of minimum potential energy, the system function was established. The properties of tension and bending of single-walled carbon nanotubes were analyzed. The Young's modulus is about 0.36 TPa nm, which agrees perfectly with the results of previous analysis by other researchers. It is found, for the first time, that the Young's moduli, for Zigzag nanotubes, are different from each other when the system energy was expressed as the sum of two or three individual energy terms in molecular mechanics. Whereas, the Young's moduli were the same for the Armchair nanotubes. It is found, when simulating the bending, that the deflections are closer to the theoretical ones, of the classical elasticity, when the diameter of the carbon nanotube increases. 展开更多
关键词 Carbon nanotube molecular mechanics molecular structural mechanics method
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Rational self-assembly of polygonal organic microcrystals for shape-dependent multi-directional 2D optical waveguides 被引量:1
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作者 Chao-Fei Xu Yue Yu +3 位作者 Qiang Lv Chang-Cun Yan Xue-Dong Wang Liang-Sheng Liao 《Chinese Chemical Letters》 SCIE CAS CSCD 2022年第6期3255-3258,共4页
Micro-nano-level photonic waveguide regulation is essential for future on-chip photonic integrated systems and is still of great challenges.We report a molecular design strategy,changing the position of the methyl sub... Micro-nano-level photonic waveguide regulation is essential for future on-chip photonic integrated systems and is still of great challenges.We report a molecular design strategy,changing the position of the methyl substituent makes the arrangement of the three isomer molecules different in their respective crystals.Based on this strategy,three sheet-like crystals with different polygonal morphologies were prepared via solution self-assembly approach.The in-depth optical measurements demonstrated that these three microsheet crystals have different 2D optical waveguide performances related to the shapes.Our work provides a feasible design strategy and material preparation method for realizing precise 2D optical waveguide modulation,which lays the foundation for complex photonic integrated systems in the future. 展开更多
关键词 2D optical waveguide Polygonal organic microcrystals Optical waveguide modulation Precise self-assembly molecular design
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Advances in self-assembly and regulation of aromatic carboxylic acid derivatives at HOPG interface 被引量:1
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作者 Jianqiao Li Xiaoyi Zu +3 位作者 Yuxin Qian Wubiao Duan Xunwen Xiao Qingdao Zeng 《Chinese Chemical Letters》 SCIE CAS CSCD 2020年第1期10-18,共9页
Aromatic carboxylic acid self-assembly has been a hot research field for many scientists due to its strong coordination ability and flexible coordination mode.The hydrogen bond formed between aromatic carboxylic acids... Aromatic carboxylic acid self-assembly has been a hot research field for many scientists due to its strong coordination ability and flexible coordination mode.The hydrogen bond formed between aromatic carboxylic acids is a strong intermolecular force and has directionality and saturation,which plays a very important role in the self-assembly and regulation of aromatic carboxylic acids.In this review,we introduce surface organization formed by aromatic carboxylic acids with the aid of scanning tunneling microscopy(STM).These two-dimensional structures include molecular templates,host-vip systems,and photo-isomerization structures.We also emphasize the thermodynamics and dynamics,which are important research topics of current and future study. 展开更多
关键词 Aromatic carboxylic acid self-assembly molecular templates Host-vip systems PHOTO-ISOMERIZATION Scanning tunneling microscopy(STM)
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The LBFGS quasi-Newtonian method for molecular modeling prion AGAAAAGA amyloid fibrils 被引量:1
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作者 Jiapu Zhang Yating Hou +2 位作者 Yiju Wang Changyu Wang Xiangsun Zhang 《Natural Science》 2012年第12期1097-1108,共12页
Experimental X-ray crystallography, NMR (Nuclear Magnetic Resonance) spectroscopy, dual polarization interferometry, etc. are indeed very powerful tools to determine the 3-Dimensional structure of a protein (including... Experimental X-ray crystallography, NMR (Nuclear Magnetic Resonance) spectroscopy, dual polarization interferometry, etc. are indeed very powerful tools to determine the 3-Dimensional structure of a protein (including the membrane protein);theoretical mathematical and physical computational approaches can also allow us to obtain a description of the protein 3D structure at a submicroscopic level for some unstable, noncrystalline and insoluble proteins. X-ray crystallography finds the X-ray final structure of a protein, which usually need refinements using theoretical protocols in order to produce a better structure. This means theoretical methods are also important in determinations of protein structures. Optimization is always needed in the computer-aided drug design, structure-based drug design, molecular dynamics, and quantum and molecular mechanics. This paper introduces some optimization algorithms used in these research fields and presents a new theoretical computational method—an improved LBFGS Quasi-Newtonian mathematical optimization method—to produce 3D structures of prion AGAAAAGA amyloid fibrils (which are unstable, noncrystalline and insoluble), from the potential energy minimization point of view. Because the NMR or X-ray structure of the hydrophobic region AGAAAAGA of prion proteins has not yet been determined, the model constructed by this paper can be used as a reference for experimental studies on this region, and may be useful in furthering the goals of medicinal chemistry in this field. 展开更多
关键词 Protein 3D Structure COMPUTATIONAL Approaches Optimization method molecular Modelling PRION AGAAAAGA AMYLOID FIBRILS
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Establishment of Molecular Biological Method for Identification of Bacteria by 16S rDNA and gyrB Gene 被引量:2
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作者 Xiaxia HOU Yunxia WANG +1 位作者 Cuizhi LI Zhiyong LU 《Asian Agricultural Research》 2023年第4期21-25,共5页
[Objectives]The paper was to establish a molecular biological method for identification of bacterial strains.[Methods]The thalli of standard bacterial strains existing in the laboratory were collected and genomic DNA ... [Objectives]The paper was to establish a molecular biological method for identification of bacterial strains.[Methods]The thalli of standard bacterial strains existing in the laboratory were collected and genomic DNA was extracted for amplification of 16S rDNA and gyrB gene.The 16S rDNA and gyrB gene sequences were obtained after sequencing.Sequences were aligned and analyzed via EzBioCloud and NCBI database,and phylogenetic trees were constructed to determine the species relationship of strains.Meantime,they were compared with known strains.[Results]This method could identify 5 standard strains accurately to the species level.The 16S rDNA and gyrB gene sequences were aligned and analyzed in EzBioCloud database and NCBI database.The strain with the max score was consistent with the known strain.And the query cover and ident were both above 99%.[Conclusions]The established molecular biological method for identification of bacterial strains by 16S rDNA and gyrB gene has good accuracy,which effectively solves the problem that the laboratory identification of bacteria relies on traditional methods and the accuracy can not be guaranteed,and further improves the identification ability of laboratory bacterial strains. 展开更多
关键词 16S rDNA GYRB Bacterial identification molecular biological method
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Evaluation of gases'molecular abundance ratio by fiber-optic laser-induced breakdown spectroscopy with a metal-assisted method 被引量:1
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作者 Yu ZHU Pingwei ZHOU Shengfu LI 《Plasma Science and Technology》 SCIE EI CAS CSCD 2021年第12期176-182,共7页
A metal-assisted method is proposed for the evaluation of gases’molecular abundance ratio in fiber-optic laser-induced breakdown spectroscopy(FO-LIBS).This method can reduce the laser ablation energy and make gas com... A metal-assisted method is proposed for the evaluation of gases’molecular abundance ratio in fiber-optic laser-induced breakdown spectroscopy(FO-LIBS).This method can reduce the laser ablation energy and make gas composition identification possible.The principle comes from the collision between the detected gases and the plasma produced by the laser ablation of the metal substrate.The interparticle collision in the plasma plume leads to gas molecules dissociating and sparking,which can be used to determine the gas composition.The quantitative relationship between spectral line intensity and molecular abundance ratio was developed over a large molecular abundance ratio range.The influence of laser ablation energy and substrate material on gas quantitative calibration measurement is also analyzed.The proposed metal-assisted method makes the measurement of gases’molecular abundance ratios possible with an FO-LIBS system. 展开更多
关键词 gases’molecular abundance ratio collision of plasma fiber optical laser induced breakdown spectroscopy metal assisted method
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