Based on outcrop profiles,drilling cores,cast thin sections etc.,the types,microfacies combinations and distribution pattern of microbial carbonates in the Ordovician middle assemblage of the mid-eastern Ordos Basin h...Based on outcrop profiles,drilling cores,cast thin sections etc.,the types,microfacies combinations and distribution pattern of microbial carbonates in the Ordovician middle assemblage of the mid-eastern Ordos Basin have been systematically analyzed.The middle assemblage of Ordovician in the mid-eastern Ordos Basin has microbial carbonates formed by the calci-fication of cyanobacteria,including microbial biostromes and microbial mounds made of stromatolites,thrombolites,and on-colites.The distribution of the carbonates shows obvious“stratum-control”and“regional”characteristics.The microbial bio-stromes 2–3 m thick each are controlled by sequence cycles and sedimentary facies changes,and were mainly formed in the tidal flat environment during the depositional stages of the Ma56 and Ma55 sub-members.The microbial biostrome in the Ma55 sub-member occurring near the carbonate-evaporite transition interface in the early stage of the transgression is distributed mainly in the Mizhi subsag in the eastern part of the basin;the microbial biostrome in the Ma56 sub-member turns up near the carbonate-evoporite transition zone in ring shape in the east of the central uplift.The ancient landform had noticeable control on the distribution of microbial mounds.The microbial mounds or mound-shoal complexes developing mainly during the de-positional stages of Ma57_Ma510 sub-members are about 15–25 m thick in single layer and distributed largely in the Wushenqi-Jingbian paleouplift.The development model of the microbial carbonate rocks shows that the carbonate-evaporite lithologic transition zone and the Wushenqi-Jingbian paleouplift are favorable exploration zones of microbial carbonates in the Ordovician middle assemblages.展开更多
This paper reviews the current progress and problems in the study of microbialites and microbial carbonates. Microbialites and microbial carbonates, formed during growth of microbes by their calcification and binding ...This paper reviews the current progress and problems in the study of microbialites and microbial carbonates. Microbialites and microbial carbonates, formed during growth of microbes by their calcification and binding of detrital sediment, have recently become one of the most popular geological topics. They occur throughout the entire geological history, and bear important theoretical and economic significances due to their complex structures and formative processes. Microbialites are in place benthic microbial buildups, whereas microbial carbonates can be classified into two categories： stabilized microbial carbonates（i.e., carbonate microbialites, such as stromatolites and thrombolites） and mobilized microbial carbonates（i.e., microbial carbonate grains, such as oncoids and microbial lumps）. Various texture, structures, and morphologies of microbialites and microbial carbonates hamper the systematic description and classification. Moreover, complex calcification pathways and diagenetic modifications further obscure the origin of some microbialites and microbial carbonates. Recent findings of abundant sponge spicules in previously identified ＂microbialites＂ challenge the traditional views about the origins of these ＂microbialites＂ and their implications to reef evolution. Microbialites and microbial carbonates did not always flourish in the aftermath of extinction events, which, together with other evidences, suggests that they are affected not only by metazoans but also by other geological factors. Their growth, development, and demise are also closely related to sea-level changes, due to their dependence on water depth, clarity, nutrient, and sunlight. Detailed studies on microbialites and microbial carbonates throughout geological history would certainly help understand causes and effects of major geological events as well as the coevolution of life and environment.展开更多
This study is the first systematic assessment of the Lower Ordovician microbial carbonates in Songzi,Hubei Province,China.This paper divides the microbial carbonates into two types according to growth patterns,namely ...This study is the first systematic assessment of the Lower Ordovician microbial carbonates in Songzi,Hubei Province,China.This paper divides the microbial carbonates into two types according to growth patterns,namely nongranular and granular.The nongranular types include stromatolites,thrombolites,dendrolites,leiolites and laminites;the granular types are mainly oncolites and may include a small amount of microbiogenic oolite.According to their geometric features,the stromatolites can be divided into four types:stratiform,wavy,columnar and domal.Additionally,dipyramidal columnar stromatolites are identified for the first time and represent a new type of columnar stromatolite.The thrombolites are divided into three types:speckled,reticulated and banded.The grazing gastropod Ecculiomphalus and traces of bioturbation are observed in the speckled and reticulated thrombolites.This paper considers these two kinds of thrombolites to represent bioturbated thrombolites.These findings not only fill gaps in the field of domestic Ordovician bioturbated thrombolites but also provide new information for the study of thrombolites.Based on the analysis of the sedimentary characteristics of microbialites,the depositional environments of the various types of microbialites are described,and the distribution patterns of their depositional environments are summarized.The relationship between the development of microbialites and the evolution and radiation of metazoans during the Early to Middle Ordovician is discussed.Consistent with the correspondence between the stepwise and rapid radiation of metazoans and the abrupt reduction in the number of microbialites between the late Early Ordovician and the early Middle Ordovician,fossils of benthonic grazing gastropods(Ecculiomphalus)were found in the stromatolites and thrombolite of the study area.It is believed that the gradual reduction in microbialites was related to the rapid increase in the abundance of metazoans.Grazers not only grazed on the microorganisms that formed stromatolites,resulting in a continuous reduction in the number of stromatolites,but also disrupted the growth state of the stromatolites,resulting in the formation of unique bioturbated thrombolites in the study area.Hydrocarbon potential analysis shows that the microbialites in the Nanjinguan Formation represent better source rocks than those in the other formations.展开更多
The Upper Ediacaran microbial carbonates of the Tarim Basin are potential reservoir geobodies for future hydrocarbon exploration with rising interest in exploration for deeply-buried reserves.However,little knowledge ...The Upper Ediacaran microbial carbonates of the Tarim Basin are potential reservoir geobodies for future hydrocarbon exploration with rising interest in exploration for deeply-buried reserves.However,little knowledge has been acquired on the types of microbial carbonates that are present,the properties of the reservoir and the pore evolution,hampering predictions of high-quality reservoirs in these carbonates.Integrated with petrography and in-situ U-Pb dating geochronology analyses,this study aims to clarify the types of microbial carbonates present and to reconstruct the pore evolution processes of the potential reservoir rocks.The Upper Ediacaran microbial carbonates of the Tarim Basin can be divided into four types,based on their features in terms of different scales(macro-to micro-):microbial laminite,stromatolite,spongiomicrobialite and microbial-peloidal wackestone/mudstone.Petrophysical properties show that all these microbial carbonates have low porosity and very low permeability with poor connectivity.These carbonates were subject to long-term and complex diagenetic processes,mainly consisting of dissolution,compaction,pervasive dolomitization,cementation and fracturing.The most important reservoir spaces are contributed by vugs and dissolution-enlarged pores,which are likely to have been associated with the widespread uplift of the Aksu area in the terminal Ediacaran.In contrast,the cementation of the fine-to-medium crystalline dolomite greatly reduced the pre-existing pores.Pore types are closely related to different microbial fabrics,which played an important role in the pore evolution of the microbial carbonates.展开更多
Based on comprehensive analysis of seismic,logging,core,thin section data,and stable isotopic compositions of carbon and oxygen,the sedimentary filling characteristics of the Lower Cretaceous Barra Velha Formation seq...Based on comprehensive analysis of seismic,logging,core,thin section data,and stable isotopic compositions of carbon and oxygen,the sedimentary filling characteristics of the Lower Cretaceous Barra Velha Formation sequence in H oil field,Santos Basin,are studied,and the high-frequency sequence stratigraphic framework is established,and the spatial distribution of reef-shoal bodies are predicted and the controlling factors are discussed.During the depositional period of the Barra Velha Formation,the study area is a slope-isolated platform-slope sedimentary pattern from southwest to northeast and the change of climate background from rift to depression periods has resulted in the variation of sedimentary characteristics from the lower third-order sequence SQ1(BVE 300 Member)of low-energy deep water to the upper third-order sequence SQ2(BVE 200 and 100 members)of high-energy shallow water in the Barra Velha Formation.The activities of extensional faults and strike-slip faults in rift period and the sedimentary differentiation from platform margin to intra-platform in depression period made the sedimentary paleogeomorphology in these two periods show features of“three ridges and two depressions”.The reef-shoal bodies mainly developed in the SQ2-LHST period,with vertical development positions restricted by the periodic oscillation of the lake level,and developed on the top of each high-frequency sequence stratigraphic unit in SQ2-LHST in the platform.The strike-slip fault activity controlled the distribution of the reef-shoal bodies on the plane by changing the sedimentary paleogeomorphology.The positive flower-shaped strike-slip faults made the formation of local highlands at the margins of and inside the shallow water platforms and which became high-energy sedimentary zones,creating conditions for the development of reef-shoal bodies.展开更多
Microbially induced calcium carbonate precipitation(MICP)is an eco-friendly technology for soil improvement.Although numerous experiments have been conducted to solidify sand foundations using MICP,the mechanisms by w...Microbially induced calcium carbonate precipitation(MICP)is an eco-friendly technology for soil improvement.Although numerous experiments have been conducted to solidify sand foundations using MICP,the mechanisms by which grain interfacial morphologies influencethe MICP process remain unclear.This study utilized 3D-printed flowcells with different boundary morphologies to investigate the effects of interfacial morphologies on the MICP process.CaCO_(3)precipitation characteristics were investigated through microscopic observation and image quantificationanalysis.The results indicate that low flowvelocities near the interface promote bacterial accumulation due to reduced hydrodynamic shear forces.Rough interfaces,compared to smooth ones,enhance bacterial adsorption owing to the larger regions of low flowvelocity,increased surface area,and the formation of local eddies,which promote greater CaCO_(3)precipitation.Compared to the regions away from the interface,a higher abundance of small CaCO_(3)crystals is observed near the interface because of the high urease activity from bacteria and the reduced shear-induced entrainment due to the low flowvelocity.Besides,larger crystals also preferentially precipitate in proximity to interfaces as the low flowvelocity enhances crystal growth according to the particle attachment theory.The presence of rough interfaces further reduces flowvelocities,leading to the precipitation of larger and more densely packed CaCO_(3)crystals.Therefore,rough interfaces promote the microbially induced calcium carbonate precipitation.This work is expected to enhance the understanding of microbially induced calcium carbonate precipitation characteristics on solid surfaces such as soil grains and contribute to the optimization of MICP applications.展开更多
Two research methods,geomicrobiology and carbonate sedimentology,were adopted to study the microbial carbonates in the beachrocks,Shuiweiling,Luhuitou,Sanya City,Hainan Island.The results indicate that microbial carbo...Two research methods,geomicrobiology and carbonate sedimentology,were adopted to study the microbial carbonates in the beachrocks,Shuiweiling,Luhuitou,Sanya City,Hainan Island.The results indicate that microbial carbonates occur in Shuiweiling beachrocks and cements related to microbial activitives are common.Microbial carbonates were mainly developed on the surfaces of coral skeletons and within the coral(fragments and shivers)skeletal cavities,and rarely grew in interspaces formed by coral and other biological detritus.The growth morphologies of microbial carbonates are various,including stromatolitic lamination,thin crusts,dome-like,and microbialites.Microbial carbonates commonly trap fine-sized bioclasts,contain tubular filaments,and show laminated growth striation.Microbial carbonates within the coral skeletal cavities are generally stromatolitic cone-shaped,with a random growth direction along the bearing of trend of cavities,showing distinct growth laminae and recognizable growth phases.It is a special growth pattern of crypt microbial carbonates.Microbial cements occur mainly in shape of needle cement,calcified filaments,microborings,and calcified framboidal spheres.The needle cement is the most common type.These microbial cements indicate that microbial activities and microbial carbonates played an important role in beachrock formation in which carbonates were dominant components and the climate of tropical ocean monsoon was influential.Such microbial carbonates and microbial cementation have not been reported here from beachrocks along the northern shorelines of the South China Sea.The results support a clear microbial origin for certain carbonate cements in beachrocks,confirm that microbial carbonates are a significant contributor to carbonate sedimentation,and widen the knowledge of beachrocks from a new field.展开更多
The objective of this study is to investigate the potential of the microbially induced carbonate precipitation(MICP)method for leakage control in geological CO_(2) storage.It is crucial to understand the influence of ...The objective of this study is to investigate the potential of the microbially induced carbonate precipitation(MICP)method for leakage control in geological CO_(2) storage.It is crucial to understand the influence of supercritical environmental factors on the MICP,as this is directly related to the safety of geological storage systems.This paper analyzes the impact of four key factors on the MICP process and the resulting CaCO_(3) precipitation.These factors are temperature,CO_(2) pressure,bacterial suspension(BS),and cementation solution(CS)concentration.The influence of the above four factors on the MICP process and the resulting CaCO_(3) precipitation is investigated by solution tests,scanning electron microscopy(SEM)tests,X-ray diffraction(XRD)tests,and ultrasonic oscillation tests.The results indicate that the MICP process is inhibited in high temperature and CO_(2) pressure environments.Under supercritical CO_(2)(SC-CO_(2))conditions,the quantity of CaCO_(3) precipitation formed is reduced by approximately 35%compared to that produced under normal temperature and pressure conditions.The morphology and mineral composition of CaCO_(3) crystals are influenced by temperature and CO_(2) pressure,which in turn control their cementitious properties.The optimal concentration of CS is 0.5-0.75 mol/L,with a temperature of 45℃ and a CO_(2) pressure of 7.5 MPa.Furthermore,increasing the BS concentration can mitigate the inhibition of SC-CO_(2) in the MICP process.The findings of this study are significant for the application of the MICP method in geological CO_(2) storage.展开更多
Understanding the elevational patterns of soil microbial carbon(C)metabolic potentials is instrumental for predicting changes in soil organic C(SOC)stocks in the face of climate change.However,such patterns remain unc...Understanding the elevational patterns of soil microbial carbon(C)metabolic potentials is instrumental for predicting changes in soil organic C(SOC)stocks in the face of climate change.However,such patterns remain uncertain in arid mountain ecosystems,where climosequences are quite different from other ecosystems.To address this gap,this study investigated the distribution determinants of microbial communities,C cycling-related genes,and SOC fractions along an elevational gradient(1707–3548 m),with a mean annual precipitation(MAP)range of 38 to 344 mm,on the north slope of the central part of the Kunlun Mountains,China using a metagenomic approach.The results showed that elevation significantly influenced the α-diversity(Shannon index)and composition of microbial communities as well as the C cycling-related genes.The α-diversities of microbial taxa and C cycling-related genes linearly increased with the increase in MAP along the elevational gradient.The elevational patterns of the genes encoding glycoside hydrolases and glycosyl transferases(GTs)were mainly driven by soil electrical conductivity(EC),mean annual temperature(MAT),MAP,and plant diversity.Furthermore,mineral-associated organic C(MAOC),particulate organic C(POC),and their sum generally increased with elevation.However,the MAOC/POC ratio followed a unimodal pattern,suggesting greater stability of the SOC pool in the mid-elevation regions.This unimodal pattern was likely influenced by the abundances of Actinobacteria and the genes encoding GTs and carbohydrate esterases and the threshold effects of soil EC and MAT.In summary,our findings indicate that the distribution patterns of microbial communities and C cycling-related genes along the elevational gradient in an arid ecosystem are distinct from those in the regions with higher MAP,facilitating the prediction of climate change effects on SOC metabolism under more arid conditions.Soil salinity,plant diversity,precipitation,and temperature are the main regulatory factors of microbial C metabolism processes,and they potentially play a central role in mediating SOC pool stability.展开更多
This study presents an experimental investigation into the effects of microbial induced carbonate precipitation(MICP)treatment factors on the shear behavior of MICP-treated loess soil.Several groups of loess samples w...This study presents an experimental investigation into the effects of microbial induced carbonate precipitation(MICP)treatment factors on the shear behavior of MICP-treated loess soil.Several groups of loess samples were prepared and subjected to MICP treatment with varying cementation reagent concentration,calcium source,and curing duration across three levels.The results indicate that the shear strength of MICP-treated loess achieves optimal performance when treated with the cementation reagent concentration of 1.0 M,cured for 14 days,and using calcium chloride as the calcium source.Compared to untreated loess,the cohesion and internal friction angle increased by approximately 77%and 26%,respectively.To evaluate the influence of these treatment variables,orthogonal analysis was performed on the obtained shear strength parameters.The analysis indicates that the cementation reagent concentration is the primary factor influencing shear strength,followed by the calcium source and curing duration.Additionally,scanning electron microscopy(SEM)tests were performed to investigate the microstructure of the MICP-treated samples.The results reveal that calcium carbonate significantly enhances the loess structure by creating large effective bonding areas,which in turn increases the bridging force.As a result,the overall shear strength of the treated loess shows a marked improvement compared to the untreated samples.展开更多
Bacterial cells are widely accepted as nucleation sites for calcium carbonate precipitation in biomineralization based on the Microbially Induced Carbonate Precipitation(MICP)process.For MICP-based insitu biotreatment...Bacterial cells are widely accepted as nucleation sites for calcium carbonate precipitation in biomineralization based on the Microbially Induced Carbonate Precipitation(MICP)process.For MICP-based insitu biotreatment,the firstproblem to be solved is how to introduce and retain the bacterial cells in the soil,which involves the migration and retention of bacterial cells during the biogrouting process.Soil particle size,a key factor in determining pore throat size,can have a significanteffect on the migration and retention of bacterial cells in the soil and therefore on biomineralization.To investigate the effect of particle size on the migration and retention of bacterial cells in sand and its biomineralization,two sets of tests were carried out in this study,including percolation tests and sand column treatment tests.Soil urease activity(definedas urease activity per unit mass of soil)and calcium carbonate content of the biomineralized sand were measured to comprehensively assess the migration and retention of bacterial cells in the sand.The results indicate that sands with a particle size smaller than 0.25 mmwould inhibit the migration of bacteria in the sand,resulting in a nonuniform distribution of precipitated calcium carbonate and a low strength enhancement of biomineralization.On the other hand,sands with a particle size larger than 1.18 mm are unfavorable for retaining bacterial cells in the sand,resulting in low calcium conversion efficiency.Meanwhile,particle size would also affect the formation of effective calcium carbonate through interparticle contact number and interparticle pore size,and thus biomineralization.展开更多
This study presents a physics-informed modelling framework that combines finite element method(FEM)simulations and supervised machine learning(ML)to predict the self-healing performance of microbial concrete.A FEniCS-...This study presents a physics-informed modelling framework that combines finite element method(FEM)simulations and supervised machine learning(ML)to predict the self-healing performance of microbial concrete.A FEniCS-based FEM platform resolves multiphysics phenomena including nutrient diffusion,microbial CaCO_(3) precipitation,and stiffness recovery.These simulations,together with experimental data,are used to train ML models(Random Forest yielding normalized RMSE≈0.10)capable of predicting performance over a wide range of design parameters.Feature importance analysis identifies curing temperature,calcium carbonate precipitation rate,crack width,bacterial strain,and encapsulation method as the most influential parameters.The coupled FEM-ML approach enables sensitivity analysis,design optimization,and prediction beyond the training dataset(consistently exceeding 90%healing efficiency).Experimental validation confirms model robustness in both crack closure and strength recovery.This FEM–ML pipeline thus offers a generalizable,interpretable,and scalable strategy for the design of intelligent,self-adaptive construction materials.展开更多
Fissured rocks are prevalent in geotechnical engineering and can significantlyimpact the stability of engineering structures.Microbial-induced carbonate precipitation(MICP)technology provides an ecofriendly solution f...Fissured rocks are prevalent in geotechnical engineering and can significantlyimpact the stability of engineering structures.Microbial-induced carbonate precipitation(MICP)technology provides an ecofriendly solution for repairing fissuredrocks.To optimize repair effectiveness,this study firstinvestigated the effects of environmental factors on bacterial growth,urease activity,and calcium carbonate yield.The optimal MICP scheme was determined to be a pH of 9,a temperature of 25℃,and a cementation solution concentration of 0.5 mol/L.Subsequently,the sandstone specimens with various fissureapertures were repaired using MICP with different bacterial concentrations.Dynamic tests were carried out on the repaired specimens using a split Hopkinson pressure bar system.The experimental results indicate that the dynamic strength of the MICP-repaired specimens positively correlates with strain rate,but decreases with increasing bacterial concentration and fissureaperture.These factors have little effect on the progressive failure behavior.Surface cracks were mainly compression-shear cracks in the repair area and tensile-shear cracks at the end of the specimen.Moreover,the crystal morphology observed by scanning electron microscope indicates that MICP primarily produces vaterite crystals,and lower bacterial concentrations favor the formation of more stable calcite crystals,thereby enhancing the cementitious properties.Furthermore,X-ray computed tomography demonstrates an uneven distribution of calcium carbonate within fissures,with higher fillingrates observed at the injection end and at the bottom of the fissures.Lower bacterial concentrations and smaller fissureapertures are conducive to more uniform distribution and increased fillingrate of calcium carbonate,with fissureaperture exerting a more dominant influence.展开更多
The biological stabilization of soil using microbially induced carbonate precipitation(MICP)employs ureolytic bacteria to precipitate calcium carbonate(CaCO3),which binds soil particles,enhancing strength,stiffness,an...The biological stabilization of soil using microbially induced carbonate precipitation(MICP)employs ureolytic bacteria to precipitate calcium carbonate(CaCO3),which binds soil particles,enhancing strength,stiffness,and erosion resistance.The unconfinedcompressive strength(UCS),a key measure of soil strength,is critical in geotechnical engineering as it directly reflectsthe mechanical stability of treated soils.This study integrates explainable artificialintelligence(XAI)with geotechnical insights to model the UCS of MICP-treated sands.Using 517 experimental data points and a combination of various input variables—including median grain size(D50),coefficientof uniformity(Cu),void ratio(e),urea concentration(Mu),calcium concentration(Mc),optical density(OD)of bacterial solution,pH,and total injection volume(Vt)—fivemachine learning(ML)models,including eXtreme gradient boosting(XGBoost),Light gradient boosting machine(LightGBM),random forest(RF),gene expression programming(GEP),and multivariate adaptive regression splines(MARS),were developed and optimized.The ensemble models(XGBoost,LightGBM,and RF)were optimized using the Chernobyl disaster optimizer(CDO),a recently developed metaheuristic algorithm.Of these,LightGBM-CDO achieved the highest accuracy for UCS prediction.XAI techniques like feature importance analysis(FIA),SHapley additive exPlanations(SHAP),and partial dependence plots(PDPs)were also used to investigate the complex non-linear relationships between the input and output variables.The results obtained have demonstrated that the XAI-driven models can enhance the predictive accuracy and interpretability of MICP processes,offering a sustainable pathway for optimizing geotechnical applications.展开更多
The effects of nitrogen(N)deposition on forest soil organic carbon(SOC)are largely unclear,likely due to the divergent responses of particulate(POC)and mineral-associated carbon(MAOC).Conventional understory inorganic...The effects of nitrogen(N)deposition on forest soil organic carbon(SOC)are largely unclear,likely due to the divergent responses of particulate(POC)and mineral-associated carbon(MAOC).Conventional understory inorganic N(UIN)additions neglect canopy processes and the impacts of organic N,potentially misevaluating N deposition effects.This study was conducted in a long-term N addition experiment established in a Moso bamboo forest,which included six treatments combining canopy and understory N additions with organic(urea glycine)and inorganic(NH_(4)NO_(3))forms at a rate of 50 kg N·ha^(-1)·yr^(-1).Litterbags were installed for a two-year decomposition experiment and collected at quarterly intervals,together with concurrent soil sampling under litterbags at 0–10 cm depth.We aimed to examine the effects of canopy vs.understory N addition and organic vs.inorganic N form on soil POC and MAOC concentrations.Our results showed that canopy N additions significantly reduced POC(ased POC-15.9%)but did not affect MAOC(P>0.05).Conversely,understory N additions significantly incre(30.9%)and decreased MAOC(and fungal diversity(FuD),-28.9%).Canopy N additions decreased POC by enhancing peroxidase activity while understory N additions promoted POC by inhibiting litter decomposition.Additionally,understory N addition-induced soil acidification decreased soil Ca^(2+)concentration,microbial carbon use efficiency,and bacterial necromass C,as well as the release of litter water-soluble compounds,thereby inhibiting MAOC.Moreover,nitrogen forms(organic vs.inorganic)had no effect on SOC fractions.Our findings underscore that canopy and understory N addition approaches differentially regulate SOC fractions by altering litter decomposition–microbial–mineral interactions,and the understory approach may overestimate soil POC gain and MAOC loss driven by atmospheric N deposition.展开更多
Soil samples were collected from different rubber fields in twenty-five plotsselected randomly in the Experimental Farm of the Chinese Academy of Tropical Agriculture Scienceslocated in Hainan, China, to analyse the e...Soil samples were collected from different rubber fields in twenty-five plotsselected randomly in the Experimental Farm of the Chinese Academy of Tropical Agriculture Scienceslocated in Hainan, China, to analyse the ecological effect of rubber cultivation. The results showedthat in the tropical rubber farm, soil microbial biomass C (MBC) and total organic C (TOC) wererelatively low in the content but highly correlated with each other. After rubber tapping, soil MBCof mature rubber fields decreased significantly, by 55.5 percent. compared with immature rubberfields. Soil TOC also decreased but the difference was not significant. Ratios of MBC to TOCdecreased significantly. The decreasing trend of MBC stopped at about ten years of rubbercultivation. After this period, soil MBC increased relatively while soil TOC still kept indecreasing. Soil MBC changes could be measured to predict the tendency of soil organic matterchanges due to management practices in a tropical rubber farm several years before the changes insoil TOC become detectable.展开更多
The impact of pH changes on microbial biomass carbon (Cmic) and microbial biomass phosphorus (Pmic)were examined for 3 red soils under citrus production with different lengths of cultivation. Soil pH significantly aff...The impact of pH changes on microbial biomass carbon (Cmic) and microbial biomass phosphorus (Pmic)were examined for 3 red soils under citrus production with different lengths of cultivation. Soil pH significantly affected Cmic and Pmic. The Cmic and Pmic changes, as a function of soil pH, appeared to follow a normal distribution with the original soil pH value at the apex and as pH increased or decreased compared to the original soil pH, Cmic and Pmic declined. Moreover, there were critical pH values at both extremes (3.0 on the acidic side and 8.0 to 8.5 on the alkaline side), beyond which most of microorganisms could never survive.The effect of pH on Cmic and Pmic was also related to the original soil pH. The higher the original soil pH was, the less Cmic or Pmic were affected by pH change. It is suggested that soil microorganisms that grow in a soil environment with a more neutral soil pH range (I.e. pH 5.5-7.5) may have a greater tolerance to pH changes than those growing in more acidic or more alkaline soil pH conditions.展开更多
Land use changes are known to alter soil organic carbon （SOC） and microbial properties, however, information about how conversion of natural forest to agricultural land use as well as plantations affects SOC and mic...Land use changes are known to alter soil organic carbon （SOC） and microbial properties, however, information about how conversion of natural forest to agricultural land use as well as plantations affects SOC and microbial properties in the Changbai Moun- tains of Northeast China is meager. Soil carbon content, microbial biomass carbon （MBC）, basal respiration and soil carbon mineraliza- tion were studied in five selected types of land use： natural old-growth broad-leaved Korean pine mixed forest （NF）; spruce plantation （SP） established following clear-cutting of NF; cropland （CL）; ginseng farmland （GF） previously under NF; and a five-year Mongolian oak young forest （YF） reforested on an abandoned GF, in the Changbai Mountains of Northeast China in 2011. Results showed that SOC content was significantly lower in SP, CL, GF, and YF than in NF. MBC ranged from 304.4 mg/kg in CL to 1350.3 mg/kg in NF, which was significantly higher in the soil of NF than any soil of the other four land use types. The SOC and MBC contents were higher in SP soil than in CL, GF, and YF soils, yielding a significant difference between SP and CL. The value of basal respiration was also higher in NF than in SP, CL, GF, and YF. Simultaneously, higher values of the metabolic quotient were detected in CL, GF, and YF soils, indicat- ing low substrate utilization of the soil microbial community compared with that in NF and SP soil. The values of cumulative mineral- ized carbon and potentially mineralized carbon （Co） in NF were significantly higher than those in CL and GF, while no significant dif- ference was observed between NF and SP. In addition, YF had higher values of Co and C mineralization rate compared with GF. The results indicate that conversion from NF into agricultural land （CL and GF） uses and plantation may lead to a reduction in soil nutrients （SOC and MBC） and substrate utilization efficiency of the microbial community. By contrast, soils below SP were more conducive to the preservation of soil organic matter, which was reflected in the comparison of microbial indicators among CL, GF, and YF land uses. This study can provide data for evaluating soils nutrients under different land use types, and serve as references for the rational land use of natural forest in the study area.展开更多
It is difficult to collect and characterise well-preserved samples of weakly-cemented granular rocks as conventional sampling techniques often result in destruction of the cementation.An alternative approach is to pre...It is difficult to collect and characterise well-preserved samples of weakly-cemented granular rocks as conventional sampling techniques often result in destruction of the cementation.An alternative approach is to prepare synthetic geomaterials to match required specifications.This paper introduces microbially induced carbonate precipitation(MICP)as a method to reliably deliver artificiallycemented specimens with customised properties,closely resembling those of soft carbonate sandstones.The specimens are generated from materials with two highly different particle size distributions(PSDs)to access a range of achievable combinations of strengths and porosities.The MICP parameters are kept constant across all samples to obtain similar calcium carbonate characteristics(size of individual crystals,type,etc.),while injected volume is varied to achieve different cementation levels.Although uniform cementation of very coarse sands has been considered very difficult to achieve,the results show that both the fine and coarse sand specimens present high degrees of uniformity and a good degree of repeatability.The unconfined compressive strengths(UCSs)(less than 3000 kPa)and porosities(0.25e0.4)of the artificial specimens fall in the same range of values reported for natural rocks.The strength gainwas greater in the fine sand than that in the coarse sand,as the void size in the latter was significantly larger compared to the calcium carbonate crystals’size,resulting in precipitation on less effective locations,away from contacts between particles.The strengths and porosities obtained for the two sands in this work fall within ranges reported in the literature for natural soft rocks,demonstrating theMICP technique is able to achieve realistic properties and may be used to produce a full range of properties by varying the grain sizes,and possibly the width of PSD.展开更多
Soil microbial biomass is an important indicator to measure the dynamic changes of soil carbon pool.It is of great signifi cance to understand the dynamics of soil microbial biomass in plantation for rational manageme...Soil microbial biomass is an important indicator to measure the dynamic changes of soil carbon pool.It is of great signifi cance to understand the dynamics of soil microbial biomass in plantation for rational management and cultivation of plantation.In order to explore the temporal dynamics and infl uencing factors of soil microbial biomass of Keteleeria fortunei var.cyclolepis at diff erent stand ages,the plantation of diff erent ages(young forest,5 years;middle-aged forest,22 years;mature forest,40 years)at the Guangxi Daguishan forest station of China were studied to examine the seasonal variation of their microbial biomass carbon(MBC)and microbial biomass nitrogen(MBN)by chloroform fumigation extraction method.It was found that among the forests of diff erent age,MBC and MBN diff ered signifi cantly in the 0–10 cm soil layer,and MBN diff ered signifi cantly in the 10–20 cm soil layer,but there was no signifi cant diff erence in MBC for the 10–20 cm soil layer or in either MBC or MBN for the 20–40 cm soil layer.With increasing maturity of the forest,MBC gradually decreased in the 0–10 cm soil layer and increased fi rstly and then decreased in the 10–20 cm and 20–40 cm soil layers,and MBN increased fi rstly and then decreased in all three soil layers.As the soil depth increased,both MBC and MBN gradually decreased for all three forests.The MBC and MBN basically had the same seasonal variation in all three soil layers of all three forests,i.e.,high in the summer and low in the winter.Correlation analysis showed that MBC was signifi cantly positively correlated with soil organic matter,total nitrogen,and soil moisture,whereas MBN was signifi cantly positively correlated with soil total nitrogen.It showed that soil moisture content was the main factor determining the variation of soil microbial biomass by Redundancy analysis.The results showed that the soil properties changed continuously as the young forest grew into the middle-aged forest,which increased soil microbial biomass and enriched the soil nutrients.However,the soil microbial biomass declined as the middle-age forest continued to grow,and the soil nutrients were reduced in the mature forest.展开更多
基金Supported by the China National Science and Technology Major Project(2016ZX05004-006)the CNPC Science and Technology Major Project(2016E-0514).
文摘Based on outcrop profiles,drilling cores,cast thin sections etc.,the types,microfacies combinations and distribution pattern of microbial carbonates in the Ordovician middle assemblage of the mid-eastern Ordos Basin have been systematically analyzed.The middle assemblage of Ordovician in the mid-eastern Ordos Basin has microbial carbonates formed by the calci-fication of cyanobacteria,including microbial biostromes and microbial mounds made of stromatolites,thrombolites,and on-colites.The distribution of the carbonates shows obvious“stratum-control”and“regional”characteristics.The microbial bio-stromes 2–3 m thick each are controlled by sequence cycles and sedimentary facies changes,and were mainly formed in the tidal flat environment during the depositional stages of the Ma56 and Ma55 sub-members.The microbial biostrome in the Ma55 sub-member occurring near the carbonate-evaporite transition interface in the early stage of the transgression is distributed mainly in the Mizhi subsag in the eastern part of the basin;the microbial biostrome in the Ma56 sub-member turns up near the carbonate-evoporite transition zone in ring shape in the east of the central uplift.The ancient landform had noticeable control on the distribution of microbial mounds.The microbial mounds or mound-shoal complexes developing mainly during the de-positional stages of Ma57_Ma510 sub-members are about 15–25 m thick in single layer and distributed largely in the Wushenqi-Jingbian paleouplift.The development model of the microbial carbonate rocks shows that the carbonate-evaporite lithologic transition zone and the Wushenqi-Jingbian paleouplift are favorable exploration zones of microbial carbonates in the Ordovician middle assemblages.
基金supported by the National Natural Science Foundation of China (41302077 and 41290260)
文摘This paper reviews the current progress and problems in the study of microbialites and microbial carbonates. Microbialites and microbial carbonates, formed during growth of microbes by their calcification and binding of detrital sediment, have recently become one of the most popular geological topics. They occur throughout the entire geological history, and bear important theoretical and economic significances due to their complex structures and formative processes. Microbialites are in place benthic microbial buildups, whereas microbial carbonates can be classified into two categories： stabilized microbial carbonates（i.e., carbonate microbialites, such as stromatolites and thrombolites） and mobilized microbial carbonates（i.e., microbial carbonate grains, such as oncoids and microbial lumps）. Various texture, structures, and morphologies of microbialites and microbial carbonates hamper the systematic description and classification. Moreover, complex calcification pathways and diagenetic modifications further obscure the origin of some microbialites and microbial carbonates. Recent findings of abundant sponge spicules in previously identified ＂microbialites＂ challenge the traditional views about the origins of these ＂microbialites＂ and their implications to reef evolution. Microbialites and microbial carbonates did not always flourish in the aftermath of extinction events, which, together with other evidences, suggests that they are affected not only by metazoans but also by other geological factors. Their growth, development, and demise are also closely related to sea-level changes, due to their dependence on water depth, clarity, nutrient, and sunlight. Detailed studies on microbialites and microbial carbonates throughout geological history would certainly help understand causes and effects of major geological events as well as the coevolution of life and environment.
基金supported by the National Natural Science Fund of China(Grant No.41572322)Hubei Innovation Group Fund(Grant No.2015CFA024)
文摘This study is the first systematic assessment of the Lower Ordovician microbial carbonates in Songzi,Hubei Province,China.This paper divides the microbial carbonates into two types according to growth patterns,namely nongranular and granular.The nongranular types include stromatolites,thrombolites,dendrolites,leiolites and laminites;the granular types are mainly oncolites and may include a small amount of microbiogenic oolite.According to their geometric features,the stromatolites can be divided into four types:stratiform,wavy,columnar and domal.Additionally,dipyramidal columnar stromatolites are identified for the first time and represent a new type of columnar stromatolite.The thrombolites are divided into three types:speckled,reticulated and banded.The grazing gastropod Ecculiomphalus and traces of bioturbation are observed in the speckled and reticulated thrombolites.This paper considers these two kinds of thrombolites to represent bioturbated thrombolites.These findings not only fill gaps in the field of domestic Ordovician bioturbated thrombolites but also provide new information for the study of thrombolites.Based on the analysis of the sedimentary characteristics of microbialites,the depositional environments of the various types of microbialites are described,and the distribution patterns of their depositional environments are summarized.The relationship between the development of microbialites and the evolution and radiation of metazoans during the Early to Middle Ordovician is discussed.Consistent with the correspondence between the stepwise and rapid radiation of metazoans and the abrupt reduction in the number of microbialites between the late Early Ordovician and the early Middle Ordovician,fossils of benthonic grazing gastropods(Ecculiomphalus)were found in the stromatolites and thrombolite of the study area.It is believed that the gradual reduction in microbialites was related to the rapid increase in the abundance of metazoans.Grazers not only grazed on the microorganisms that formed stromatolites,resulting in a continuous reduction in the number of stromatolites,but also disrupted the growth state of the stromatolites,resulting in the formation of unique bioturbated thrombolites in the study area.Hydrocarbon potential analysis shows that the microbialites in the Nanjinguan Formation represent better source rocks than those in the other formations.
基金financially supported by the National Key Research and Development(R&D)Program of China(2017YFC0603103)the National Natural Science Foundation of China(U19B6003)。
文摘The Upper Ediacaran microbial carbonates of the Tarim Basin are potential reservoir geobodies for future hydrocarbon exploration with rising interest in exploration for deeply-buried reserves.However,little knowledge has been acquired on the types of microbial carbonates that are present,the properties of the reservoir and the pore evolution,hampering predictions of high-quality reservoirs in these carbonates.Integrated with petrography and in-situ U-Pb dating geochronology analyses,this study aims to clarify the types of microbial carbonates present and to reconstruct the pore evolution processes of the potential reservoir rocks.The Upper Ediacaran microbial carbonates of the Tarim Basin can be divided into four types,based on their features in terms of different scales(macro-to micro-):microbial laminite,stromatolite,spongiomicrobialite and microbial-peloidal wackestone/mudstone.Petrophysical properties show that all these microbial carbonates have low porosity and very low permeability with poor connectivity.These carbonates were subject to long-term and complex diagenetic processes,mainly consisting of dissolution,compaction,pervasive dolomitization,cementation and fracturing.The most important reservoir spaces are contributed by vugs and dissolution-enlarged pores,which are likely to have been associated with the widespread uplift of the Aksu area in the terminal Ediacaran.In contrast,the cementation of the fine-to-medium crystalline dolomite greatly reduced the pre-existing pores.Pore types are closely related to different microbial fabrics,which played an important role in the pore evolution of the microbial carbonates.
基金Supported by the National Science and Technology Major Project of China(2016ZX05033-002-008).
文摘Based on comprehensive analysis of seismic,logging,core,thin section data,and stable isotopic compositions of carbon and oxygen,the sedimentary filling characteristics of the Lower Cretaceous Barra Velha Formation sequence in H oil field,Santos Basin,are studied,and the high-frequency sequence stratigraphic framework is established,and the spatial distribution of reef-shoal bodies are predicted and the controlling factors are discussed.During the depositional period of the Barra Velha Formation,the study area is a slope-isolated platform-slope sedimentary pattern from southwest to northeast and the change of climate background from rift to depression periods has resulted in the variation of sedimentary characteristics from the lower third-order sequence SQ1(BVE 300 Member)of low-energy deep water to the upper third-order sequence SQ2(BVE 200 and 100 members)of high-energy shallow water in the Barra Velha Formation.The activities of extensional faults and strike-slip faults in rift period and the sedimentary differentiation from platform margin to intra-platform in depression period made the sedimentary paleogeomorphology in these two periods show features of“three ridges and two depressions”.The reef-shoal bodies mainly developed in the SQ2-LHST period,with vertical development positions restricted by the periodic oscillation of the lake level,and developed on the top of each high-frequency sequence stratigraphic unit in SQ2-LHST in the platform.The strike-slip fault activity controlled the distribution of the reef-shoal bodies on the plane by changing the sedimentary paleogeomorphology.The positive flower-shaped strike-slip faults made the formation of local highlands at the margins of and inside the shallow water platforms and which became high-energy sedimentary zones,creating conditions for the development of reef-shoal bodies.
基金supported by the National Key Research and Development Program of China(Grant No.2023YFC3707900)National Natural Science Foundation of China(Grant No.42230710,42525201)Key task project for joint research and development of the Yangtze River Delta Science and Technology Innovation Community(Grant No.2022CSJGG1200).
文摘Microbially induced calcium carbonate precipitation(MICP)is an eco-friendly technology for soil improvement.Although numerous experiments have been conducted to solidify sand foundations using MICP,the mechanisms by which grain interfacial morphologies influencethe MICP process remain unclear.This study utilized 3D-printed flowcells with different boundary morphologies to investigate the effects of interfacial morphologies on the MICP process.CaCO_(3)precipitation characteristics were investigated through microscopic observation and image quantificationanalysis.The results indicate that low flowvelocities near the interface promote bacterial accumulation due to reduced hydrodynamic shear forces.Rough interfaces,compared to smooth ones,enhance bacterial adsorption owing to the larger regions of low flowvelocity,increased surface area,and the formation of local eddies,which promote greater CaCO_(3)precipitation.Compared to the regions away from the interface,a higher abundance of small CaCO_(3)crystals is observed near the interface because of the high urease activity from bacteria and the reduced shear-induced entrainment due to the low flowvelocity.Besides,larger crystals also preferentially precipitate in proximity to interfaces as the low flowvelocity enhances crystal growth according to the particle attachment theory.The presence of rough interfaces further reduces flowvelocities,leading to the precipitation of larger and more densely packed CaCO_(3)crystals.Therefore,rough interfaces promote the microbially induced calcium carbonate precipitation.This work is expected to enhance the understanding of microbially induced calcium carbonate precipitation characteristics on solid surfaces such as soil grains and contribute to the optimization of MICP applications.
基金the Hundred Talents Program of Chinese Academy of Sciences,the National Natural Science Foundation of China(Grant Nos.40472067 and 40572072)the Foundation of CAS Key Laboratory of Marginal Sea Geology,South China Sea Institute of Oceanology(Grant No.MSGL0601)
文摘Two research methods,geomicrobiology and carbonate sedimentology,were adopted to study the microbial carbonates in the beachrocks,Shuiweiling,Luhuitou,Sanya City,Hainan Island.The results indicate that microbial carbonates occur in Shuiweiling beachrocks and cements related to microbial activitives are common.Microbial carbonates were mainly developed on the surfaces of coral skeletons and within the coral(fragments and shivers)skeletal cavities,and rarely grew in interspaces formed by coral and other biological detritus.The growth morphologies of microbial carbonates are various,including stromatolitic lamination,thin crusts,dome-like,and microbialites.Microbial carbonates commonly trap fine-sized bioclasts,contain tubular filaments,and show laminated growth striation.Microbial carbonates within the coral skeletal cavities are generally stromatolitic cone-shaped,with a random growth direction along the bearing of trend of cavities,showing distinct growth laminae and recognizable growth phases.It is a special growth pattern of crypt microbial carbonates.Microbial cements occur mainly in shape of needle cement,calcified filaments,microborings,and calcified framboidal spheres.The needle cement is the most common type.These microbial cements indicate that microbial activities and microbial carbonates played an important role in beachrock formation in which carbonates were dominant components and the climate of tropical ocean monsoon was influential.Such microbial carbonates and microbial cementation have not been reported here from beachrocks along the northern shorelines of the South China Sea.The results support a clear microbial origin for certain carbonate cements in beachrocks,confirm that microbial carbonates are a significant contributor to carbonate sedimentation,and widen the knowledge of beachrocks from a new field.
基金support provided by the National Natural Science Foundation of China(Grant No.42177141).
文摘The objective of this study is to investigate the potential of the microbially induced carbonate precipitation(MICP)method for leakage control in geological CO_(2) storage.It is crucial to understand the influence of supercritical environmental factors on the MICP,as this is directly related to the safety of geological storage systems.This paper analyzes the impact of four key factors on the MICP process and the resulting CaCO_(3) precipitation.These factors are temperature,CO_(2) pressure,bacterial suspension(BS),and cementation solution(CS)concentration.The influence of the above four factors on the MICP process and the resulting CaCO_(3) precipitation is investigated by solution tests,scanning electron microscopy(SEM)tests,X-ray diffraction(XRD)tests,and ultrasonic oscillation tests.The results indicate that the MICP process is inhibited in high temperature and CO_(2) pressure environments.Under supercritical CO_(2)(SC-CO_(2))conditions,the quantity of CaCO_(3) precipitation formed is reduced by approximately 35%compared to that produced under normal temperature and pressure conditions.The morphology and mineral composition of CaCO_(3) crystals are influenced by temperature and CO_(2) pressure,which in turn control their cementitious properties.The optimal concentration of CS is 0.5-0.75 mol/L,with a temperature of 45℃ and a CO_(2) pressure of 7.5 MPa.Furthermore,increasing the BS concentration can mitigate the inhibition of SC-CO_(2) in the MICP process.The findings of this study are significant for the application of the MICP method in geological CO_(2) storage.
基金sponsored by the Natural Science Foundation of Xinjiang Uygur Autonomous Region,China(No.2022D01B213)the Key Scientific and Technological Research Projects in the Xinjiang Production and Construction Corps,China(No.2023AB017-02)+1 种基金the West Light Foundation for Young Scholar of Chinese Academy of Sciences(No.2021-XBQNXZ-018)the National Key Research and Development Program of China(No.2022YFF1302504)。
文摘Understanding the elevational patterns of soil microbial carbon(C)metabolic potentials is instrumental for predicting changes in soil organic C(SOC)stocks in the face of climate change.However,such patterns remain uncertain in arid mountain ecosystems,where climosequences are quite different from other ecosystems.To address this gap,this study investigated the distribution determinants of microbial communities,C cycling-related genes,and SOC fractions along an elevational gradient(1707–3548 m),with a mean annual precipitation(MAP)range of 38 to 344 mm,on the north slope of the central part of the Kunlun Mountains,China using a metagenomic approach.The results showed that elevation significantly influenced the α-diversity(Shannon index)and composition of microbial communities as well as the C cycling-related genes.The α-diversities of microbial taxa and C cycling-related genes linearly increased with the increase in MAP along the elevational gradient.The elevational patterns of the genes encoding glycoside hydrolases and glycosyl transferases(GTs)were mainly driven by soil electrical conductivity(EC),mean annual temperature(MAT),MAP,and plant diversity.Furthermore,mineral-associated organic C(MAOC),particulate organic C(POC),and their sum generally increased with elevation.However,the MAOC/POC ratio followed a unimodal pattern,suggesting greater stability of the SOC pool in the mid-elevation regions.This unimodal pattern was likely influenced by the abundances of Actinobacteria and the genes encoding GTs and carbohydrate esterases and the threshold effects of soil EC and MAT.In summary,our findings indicate that the distribution patterns of microbial communities and C cycling-related genes along the elevational gradient in an arid ecosystem are distinct from those in the regions with higher MAP,facilitating the prediction of climate change effects on SOC metabolism under more arid conditions.Soil salinity,plant diversity,precipitation,and temperature are the main regulatory factors of microbial C metabolism processes,and they potentially play a central role in mediating SOC pool stability.
基金This work is supported by the Young Talent Fund of Association for Science and Technology in Shaanxi,China(20240722)the Shaanxi Province Postdoctoral Research Project(2023BSHYDZZ138)+2 种基金the Open Research Fund of Key Laboratory of Construction and Safety of Water Engineering of the Ministry of Water Resources,China Institute of Water Resources and Hydropower Research(NO.IWHR-ENGI-202305)Open project of Engineering Research Center of Concrete Technology under Marine Environment,Ministry of Education(2024KFKT-YB12)Shandong Youth Innovation Team(No.2023KJ324).
文摘This study presents an experimental investigation into the effects of microbial induced carbonate precipitation(MICP)treatment factors on the shear behavior of MICP-treated loess soil.Several groups of loess samples were prepared and subjected to MICP treatment with varying cementation reagent concentration,calcium source,and curing duration across three levels.The results indicate that the shear strength of MICP-treated loess achieves optimal performance when treated with the cementation reagent concentration of 1.0 M,cured for 14 days,and using calcium chloride as the calcium source.Compared to untreated loess,the cohesion and internal friction angle increased by approximately 77%and 26%,respectively.To evaluate the influence of these treatment variables,orthogonal analysis was performed on the obtained shear strength parameters.The analysis indicates that the cementation reagent concentration is the primary factor influencing shear strength,followed by the calcium source and curing duration.Additionally,scanning electron microscopy(SEM)tests were performed to investigate the microstructure of the MICP-treated samples.The results reveal that calcium carbonate significantly enhances the loess structure by creating large effective bonding areas,which in turn increases the bridging force.As a result,the overall shear strength of the treated loess shows a marked improvement compared to the untreated samples.
基金support by the National Natural Science Foundation of China(NSFC)(Grant Nos.52178319,42477160,52338007).
文摘Bacterial cells are widely accepted as nucleation sites for calcium carbonate precipitation in biomineralization based on the Microbially Induced Carbonate Precipitation(MICP)process.For MICP-based insitu biotreatment,the firstproblem to be solved is how to introduce and retain the bacterial cells in the soil,which involves the migration and retention of bacterial cells during the biogrouting process.Soil particle size,a key factor in determining pore throat size,can have a significanteffect on the migration and retention of bacterial cells in the soil and therefore on biomineralization.To investigate the effect of particle size on the migration and retention of bacterial cells in sand and its biomineralization,two sets of tests were carried out in this study,including percolation tests and sand column treatment tests.Soil urease activity(definedas urease activity per unit mass of soil)and calcium carbonate content of the biomineralized sand were measured to comprehensively assess the migration and retention of bacterial cells in the sand.The results indicate that sands with a particle size smaller than 0.25 mmwould inhibit the migration of bacteria in the sand,resulting in a nonuniform distribution of precipitated calcium carbonate and a low strength enhancement of biomineralization.On the other hand,sands with a particle size larger than 1.18 mm are unfavorable for retaining bacterial cells in the sand,resulting in low calcium conversion efficiency.Meanwhile,particle size would also affect the formation of effective calcium carbonate through interparticle contact number and interparticle pore size,and thus biomineralization.
基金funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie Grant Agreement No.945478(SASPRO2)supported by the ReBuilt project:Circular and Digital Renewal of Central Europe Construction and Building Sector CE0100390 ReBuiltthe Slovak Research and Development Agency under APVV-23-0383 and the Slovak Grant Agency VEGA No.2/0080/24.
文摘This study presents a physics-informed modelling framework that combines finite element method(FEM)simulations and supervised machine learning(ML)to predict the self-healing performance of microbial concrete.A FEniCS-based FEM platform resolves multiphysics phenomena including nutrient diffusion,microbial CaCO_(3) precipitation,and stiffness recovery.These simulations,together with experimental data,are used to train ML models(Random Forest yielding normalized RMSE≈0.10)capable of predicting performance over a wide range of design parameters.Feature importance analysis identifies curing temperature,calcium carbonate precipitation rate,crack width,bacterial strain,and encapsulation method as the most influential parameters.The coupled FEM-ML approach enables sensitivity analysis,design optimization,and prediction beyond the training dataset(consistently exceeding 90%healing efficiency).Experimental validation confirms model robustness in both crack closure and strength recovery.This FEM–ML pipeline thus offers a generalizable,interpretable,and scalable strategy for the design of intelligent,self-adaptive construction materials.
基金support from the National Key R&D Program of China(Grant No.2023YFC3081500)the National Natural Science Foundation of China(Grant Nos.52225904 and 52039007).
文摘Fissured rocks are prevalent in geotechnical engineering and can significantlyimpact the stability of engineering structures.Microbial-induced carbonate precipitation(MICP)technology provides an ecofriendly solution for repairing fissuredrocks.To optimize repair effectiveness,this study firstinvestigated the effects of environmental factors on bacterial growth,urease activity,and calcium carbonate yield.The optimal MICP scheme was determined to be a pH of 9,a temperature of 25℃,and a cementation solution concentration of 0.5 mol/L.Subsequently,the sandstone specimens with various fissureapertures were repaired using MICP with different bacterial concentrations.Dynamic tests were carried out on the repaired specimens using a split Hopkinson pressure bar system.The experimental results indicate that the dynamic strength of the MICP-repaired specimens positively correlates with strain rate,but decreases with increasing bacterial concentration and fissureaperture.These factors have little effect on the progressive failure behavior.Surface cracks were mainly compression-shear cracks in the repair area and tensile-shear cracks at the end of the specimen.Moreover,the crystal morphology observed by scanning electron microscope indicates that MICP primarily produces vaterite crystals,and lower bacterial concentrations favor the formation of more stable calcite crystals,thereby enhancing the cementitious properties.Furthermore,X-ray computed tomography demonstrates an uneven distribution of calcium carbonate within fissures,with higher fillingrates observed at the injection end and at the bottom of the fissures.Lower bacterial concentrations and smaller fissureapertures are conducive to more uniform distribution and increased fillingrate of calcium carbonate,with fissureaperture exerting a more dominant influence.
文摘The biological stabilization of soil using microbially induced carbonate precipitation(MICP)employs ureolytic bacteria to precipitate calcium carbonate(CaCO3),which binds soil particles,enhancing strength,stiffness,and erosion resistance.The unconfinedcompressive strength(UCS),a key measure of soil strength,is critical in geotechnical engineering as it directly reflectsthe mechanical stability of treated soils.This study integrates explainable artificialintelligence(XAI)with geotechnical insights to model the UCS of MICP-treated sands.Using 517 experimental data points and a combination of various input variables—including median grain size(D50),coefficientof uniformity(Cu),void ratio(e),urea concentration(Mu),calcium concentration(Mc),optical density(OD)of bacterial solution,pH,and total injection volume(Vt)—fivemachine learning(ML)models,including eXtreme gradient boosting(XGBoost),Light gradient boosting machine(LightGBM),random forest(RF),gene expression programming(GEP),and multivariate adaptive regression splines(MARS),were developed and optimized.The ensemble models(XGBoost,LightGBM,and RF)were optimized using the Chernobyl disaster optimizer(CDO),a recently developed metaheuristic algorithm.Of these,LightGBM-CDO achieved the highest accuracy for UCS prediction.XAI techniques like feature importance analysis(FIA),SHapley additive exPlanations(SHAP),and partial dependence plots(PDPs)were also used to investigate the complex non-linear relationships between the input and output variables.The results obtained have demonstrated that the XAI-driven models can enhance the predictive accuracy and interpretability of MICP processes,offering a sustainable pathway for optimizing geotechnical applications.
文摘The effects of nitrogen(N)deposition on forest soil organic carbon(SOC)are largely unclear,likely due to the divergent responses of particulate(POC)and mineral-associated carbon(MAOC).Conventional understory inorganic N(UIN)additions neglect canopy processes and the impacts of organic N,potentially misevaluating N deposition effects.This study was conducted in a long-term N addition experiment established in a Moso bamboo forest,which included six treatments combining canopy and understory N additions with organic(urea glycine)and inorganic(NH_(4)NO_(3))forms at a rate of 50 kg N·ha^(-1)·yr^(-1).Litterbags were installed for a two-year decomposition experiment and collected at quarterly intervals,together with concurrent soil sampling under litterbags at 0–10 cm depth.We aimed to examine the effects of canopy vs.understory N addition and organic vs.inorganic N form on soil POC and MAOC concentrations.Our results showed that canopy N additions significantly reduced POC(ased POC-15.9%)but did not affect MAOC(P>0.05).Conversely,understory N additions significantly incre(30.9%)and decreased MAOC(and fungal diversity(FuD),-28.9%).Canopy N additions decreased POC by enhancing peroxidase activity while understory N additions promoted POC by inhibiting litter decomposition.Additionally,understory N addition-induced soil acidification decreased soil Ca^(2+)concentration,microbial carbon use efficiency,and bacterial necromass C,as well as the release of litter water-soluble compounds,thereby inhibiting MAOC.Moreover,nitrogen forms(organic vs.inorganic)had no effect on SOC fractions.Our findings underscore that canopy and understory N addition approaches differentially regulate SOC fractions by altering litter decomposition–microbial–mineral interactions,and the understory approach may overestimate soil POC gain and MAOC loss driven by atmospheric N deposition.
基金Project supported by the National Key Basic Research Support Foundation of China (No. G1999011809)the United Nations Development Programme (UNDP, No. CPR/96/105).
文摘Soil samples were collected from different rubber fields in twenty-five plotsselected randomly in the Experimental Farm of the Chinese Academy of Tropical Agriculture Scienceslocated in Hainan, China, to analyse the ecological effect of rubber cultivation. The results showedthat in the tropical rubber farm, soil microbial biomass C (MBC) and total organic C (TOC) wererelatively low in the content but highly correlated with each other. After rubber tapping, soil MBCof mature rubber fields decreased significantly, by 55.5 percent. compared with immature rubberfields. Soil TOC also decreased but the difference was not significant. Ratios of MBC to TOCdecreased significantly. The decreasing trend of MBC stopped at about ten years of rubbercultivation. After this period, soil MBC increased relatively while soil TOC still kept indecreasing. Soil MBC changes could be measured to predict the tendency of soil organic matterchanges due to management practices in a tropical rubber farm several years before the changes insoil TOC become detectable.
基金Project supported by the National Natural Science Foundation of China (No. 40025104).
文摘The impact of pH changes on microbial biomass carbon (Cmic) and microbial biomass phosphorus (Pmic)were examined for 3 red soils under citrus production with different lengths of cultivation. Soil pH significantly affected Cmic and Pmic. The Cmic and Pmic changes, as a function of soil pH, appeared to follow a normal distribution with the original soil pH value at the apex and as pH increased or decreased compared to the original soil pH, Cmic and Pmic declined. Moreover, there were critical pH values at both extremes (3.0 on the acidic side and 8.0 to 8.5 on the alkaline side), beyond which most of microorganisms could never survive.The effect of pH on Cmic and Pmic was also related to the original soil pH. The higher the original soil pH was, the less Cmic or Pmic were affected by pH change. It is suggested that soil microorganisms that grow in a soil environment with a more neutral soil pH range (I.e. pH 5.5-7.5) may have a greater tolerance to pH changes than those growing in more acidic or more alkaline soil pH conditions.
基金Under the auspices of National Key Technology Research and Development Program of China(No.2012BAD22B04)CFERN&GENE Award Funds on Ecological PaperNational Natural Science Foundation of China(No.30900208)
文摘Land use changes are known to alter soil organic carbon （SOC） and microbial properties, however, information about how conversion of natural forest to agricultural land use as well as plantations affects SOC and microbial properties in the Changbai Moun- tains of Northeast China is meager. Soil carbon content, microbial biomass carbon （MBC）, basal respiration and soil carbon mineraliza- tion were studied in five selected types of land use： natural old-growth broad-leaved Korean pine mixed forest （NF）; spruce plantation （SP） established following clear-cutting of NF; cropland （CL）; ginseng farmland （GF） previously under NF; and a five-year Mongolian oak young forest （YF） reforested on an abandoned GF, in the Changbai Mountains of Northeast China in 2011. Results showed that SOC content was significantly lower in SP, CL, GF, and YF than in NF. MBC ranged from 304.4 mg/kg in CL to 1350.3 mg/kg in NF, which was significantly higher in the soil of NF than any soil of the other four land use types. The SOC and MBC contents were higher in SP soil than in CL, GF, and YF soils, yielding a significant difference between SP and CL. The value of basal respiration was also higher in NF than in SP, CL, GF, and YF. Simultaneously, higher values of the metabolic quotient were detected in CL, GF, and YF soils, indicat- ing low substrate utilization of the soil microbial community compared with that in NF and SP soil. The values of cumulative mineral- ized carbon and potentially mineralized carbon （Co） in NF were significantly higher than those in CL and GF, while no significant dif- ference was observed between NF and SP. In addition, YF had higher values of Co and C mineralization rate compared with GF. The results indicate that conversion from NF into agricultural land （CL and GF） uses and plantation may lead to a reduction in soil nutrients （SOC and MBC） and substrate utilization efficiency of the microbial community. By contrast, soils below SP were more conducive to the preservation of soil organic matter, which was reflected in the comparison of microbial indicators among CL, GF, and YF land uses. This study can provide data for evaluating soils nutrients under different land use types, and serve as references for the rational land use of natural forest in the study area.
文摘It is difficult to collect and characterise well-preserved samples of weakly-cemented granular rocks as conventional sampling techniques often result in destruction of the cementation.An alternative approach is to prepare synthetic geomaterials to match required specifications.This paper introduces microbially induced carbonate precipitation(MICP)as a method to reliably deliver artificiallycemented specimens with customised properties,closely resembling those of soft carbonate sandstones.The specimens are generated from materials with two highly different particle size distributions(PSDs)to access a range of achievable combinations of strengths and porosities.The MICP parameters are kept constant across all samples to obtain similar calcium carbonate characteristics(size of individual crystals,type,etc.),while injected volume is varied to achieve different cementation levels.Although uniform cementation of very coarse sands has been considered very difficult to achieve,the results show that both the fine and coarse sand specimens present high degrees of uniformity and a good degree of repeatability.The unconfined compressive strengths(UCSs)(less than 3000 kPa)and porosities(0.25e0.4)of the artificial specimens fall in the same range of values reported for natural rocks.The strength gainwas greater in the fine sand than that in the coarse sand,as the void size in the latter was significantly larger compared to the calcium carbonate crystals’size,resulting in precipitation on less effective locations,away from contacts between particles.The strengths and porosities obtained for the two sands in this work fall within ranges reported in the literature for natural soft rocks,demonstrating theMICP technique is able to achieve realistic properties and may be used to produce a full range of properties by varying the grain sizes,and possibly the width of PSD.
文摘Soil microbial biomass is an important indicator to measure the dynamic changes of soil carbon pool.It is of great signifi cance to understand the dynamics of soil microbial biomass in plantation for rational management and cultivation of plantation.In order to explore the temporal dynamics and infl uencing factors of soil microbial biomass of Keteleeria fortunei var.cyclolepis at diff erent stand ages,the plantation of diff erent ages(young forest,5 years;middle-aged forest,22 years;mature forest,40 years)at the Guangxi Daguishan forest station of China were studied to examine the seasonal variation of their microbial biomass carbon(MBC)and microbial biomass nitrogen(MBN)by chloroform fumigation extraction method.It was found that among the forests of diff erent age,MBC and MBN diff ered signifi cantly in the 0–10 cm soil layer,and MBN diff ered signifi cantly in the 10–20 cm soil layer,but there was no signifi cant diff erence in MBC for the 10–20 cm soil layer or in either MBC or MBN for the 20–40 cm soil layer.With increasing maturity of the forest,MBC gradually decreased in the 0–10 cm soil layer and increased fi rstly and then decreased in the 10–20 cm and 20–40 cm soil layers,and MBN increased fi rstly and then decreased in all three soil layers.As the soil depth increased,both MBC and MBN gradually decreased for all three forests.The MBC and MBN basically had the same seasonal variation in all three soil layers of all three forests,i.e.,high in the summer and low in the winter.Correlation analysis showed that MBC was signifi cantly positively correlated with soil organic matter,total nitrogen,and soil moisture,whereas MBN was signifi cantly positively correlated with soil total nitrogen.It showed that soil moisture content was the main factor determining the variation of soil microbial biomass by Redundancy analysis.The results showed that the soil properties changed continuously as the young forest grew into the middle-aged forest,which increased soil microbial biomass and enriched the soil nutrients.However,the soil microbial biomass declined as the middle-age forest continued to grow,and the soil nutrients were reduced in the mature forest.
