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鸡基质蛋白3基因的生物信息学分析 被引量:3
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作者 邓珊珊 嵇辛勤 +5 位作者 段志强 熊建民 阮涌 赵佳福 胡焱 田宇杰 《中国家禽》 北大核心 2017年第19期67-70,共4页
根据GenBank已发表的鸡基质蛋白3(matrin 3)基因序列,设计合成一对特异性引物,以鸡胚成纤维细胞提取的总RNA反转录产物为模板,通过PCR扩增鸡matrin 3基因并进行克隆与生物信息学分析。测序结果表明:鸡matrin 3基因编码区全长为2 709 bp... 根据GenBank已发表的鸡基质蛋白3(matrin 3)基因序列,设计合成一对特异性引物,以鸡胚成纤维细胞提取的总RNA反转录产物为模板,通过PCR扩增鸡matrin 3基因并进行克隆与生物信息学分析。测序结果表明:鸡matrin 3基因编码区全长为2 709 bp,共编码902个氨基酸,理论pI为5.79,分子质量约为100.71 ku,分子式为C_(4362)H_(6903)N_(1267)O_(1418)S_(29)。序列分析结果显示:鸡matrin 3蛋白有丰富的二级结构,以无规则卷曲和α-螺旋为主;该蛋白中包含两个锌指结构域和两个RNA识别基序,其中人、小鼠和野猪的4个功能结构域氨基酸位点相同,而在鸡matrin 3蛋白中存在多个氨基酸位点变异。核苷酸同源性及遗传进化分析发现:鸡与火鸡的matrin 3基因核苷酸同源性最高(为98.0%),并且与火鸡的亲缘关系最近。研究结果为进一步研究鸡matrin 3蛋白的生物学功能奠定了基础。 展开更多
关键词 matrin3 克隆 序列分析
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ZNF638/NP220同源蛋白及其生物学作用的研究进展
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作者 孟思帆 程杉 《生理科学进展》 CAS 2023年第3期214-221,共8页
一些具有锌指结构域的蛋白质可以识别特定的靶RNA分子并与之结合,在细胞中参与或介导重要的生物学作用,这一发现拓展了人们对锌指蛋白专职转录调控并且高度依赖于特异结合靶DNA序列的认知。ZNF638/NP220及其同源蛋白Matrin3和RBM20是一... 一些具有锌指结构域的蛋白质可以识别特定的靶RNA分子并与之结合,在细胞中参与或介导重要的生物学作用,这一发现拓展了人们对锌指蛋白专职转录调控并且高度依赖于特异结合靶DNA序列的认知。ZNF638/NP220及其同源蛋白Matrin3和RBM20是一类在生物进化中相当保守的特殊锌指蛋白,定位于细胞核基质的核斑中,含有特殊的蛋白结构域,可以特定靶向RNA分子,在细胞的转录调控和RNA加工的不同阶段发挥作用,特别是RNA转录和剪接事件的偶联以及改变RNA分子的成熟和稳定性等方面。本文将对近年来有关ZNF638同源蛋白成员的发现、结构、分子机制及其在细胞分化、胚胎发育、病毒的感染等生命过程中调控作用的研究进展进行总结讨论。 展开更多
关键词 锌指蛋白 ZNF638 同源蛋白 RNA结合结构域 matrin3 RBM20
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Regulatory effects of antitumor agent matrine on FOXO and PI3K-AKT pathway in castration-resistant prostate cancer cells 被引量:14
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作者 Qi Li HaiH uang +4 位作者 Zheng He Yi Sun Yufeng Tang Xiaohong Shang Chengbin Wang 《Science China(Life Sciences)》 SCIE CAS CSCD 2018年第5期550-558,共9页
We previously demonstrated that matrine could inhibit the proliferating, migrating, as well as invading processes of both PC-3 and DU145 cells. However, the underlying molecular mechanisms have not yet been clearly de... We previously demonstrated that matrine could inhibit the proliferating, migrating, as well as invading processes of both PC-3 and DU145 cells. However, the underlying molecular mechanisms have not yet been clearly defined. In this study, using various techniques such as high throughput sequencing technology, bioinformatics, quantitative real-time PCR, and immunoblot analysis,we aimed to understand whether matrine serves as a novel regulator of FOXO and PI3K-AKT signaling pathway. DU145 and PC-3 cell lines were cultured for 24 h in vitro. Cells were treated with either matrine or control serum for 48 h, followed by extraction of total RNA. The RNA was sequenced using HiSeq 2500 high-throughput sequencing platform (Illumina). A gene library was established and quality analysis of read data carried out. Integrated database from the website DAVID was used to analyze Gene Ontology (GO), and Kyoto encyclopedia of genes and genomes (KEGG) pathway of differential genes was used for pathway analysis, screening for fold differences of more than two times. The FOXO and PI3K-AKT signaling pathways were screened, and expression levels of mRNA and core protein detected by real-time PCR and immunoblotting, respectively. High throughput sequencing and GO analysis revealed that differentially expressed genes before and after treatment played an important role in cell metabolic process, growth process, anatomical structure formation, cellular component organization, and biological regulation. KEGG signal pathway analysis revealed that FOXO and PI3K-AKT signal pathways had a significant difference between before and after matrine-treated androgen-independent prostate cancer cells PC-3 and DU145. Real-time PCR showed that matrine treatment led to a significant increase in the expression levels of FOXO1A, FOXO3A, FOXO4, and FOXO6 in DU145 and PC-3 cells (P<0.01 or P<0.05), whereas the PI3K expression levels decreased (P<0.01). Similarly, immunoblotting revealed a significant increase (P<0.05) in the expression levels of FOXO1A FOXO3A, FOXO4, and FOXO6 in both PC-3 and DU145 cells, whereas PI3K expression levels decreased (P<0.05). Matrine had a broad regulating effect on the mRNA expression profiles of both PC-3 and DU145 cells. Matrine may inhibit cell proliferation, migration, as well as invasion, and induce apoptosis in both PC-3 and DU145 cells through FOXO and PI3K-AKT signaling pathways. Matrine could therefore be used as a complementary drug to present chemotherapeutic agents, for treating androgen-independent prostate cancer. 展开更多
关键词 matrine androgen-independent prostate cancer mRNA FOXO signaling pathway PI3K-AKT signaling pathway
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