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Corrigendum to“Molecular dynamics study incorporating regression analysis:Quantitative effects of sinusoidal protrusions and wettability on water phase transition containing insoluble gases”
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《Chinese Physics B》 2026年第2期714-715,共2页
In Chin.Phys.B 34114704(2025),Eq.(7)and the associated unit notation were incorrect.The correct ones are present here.Since Eq.(7)is an in-built expression in the simulation package,the correction is purely typographi... In Chin.Phys.B 34114704(2025),Eq.(7)and the associated unit notation were incorrect.The correct ones are present here.Since Eq.(7)is an in-built expression in the simulation package,the correction is purely typographical and does not affect the simulation procedure,numerical results,or the conclusions. 展开更多
关键词 associated unit notation water phase transition WETTABILITY sinusoidal protrusions simulation packagethe insoluble gases simulation procedurenumerical molecular dynamics
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Mechanisms of Pore-Grain Boundary Interactions Influencing Nanoindentation Behavior in Pure Nickel: A Molecular Dynamics Study
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作者 Chen-Xi Hu Wu-Gui Jiang +1 位作者 Jin Wang Tian-Yu He 《Computers, Materials & Continua》 2026年第1期368-388,共21页
THE mechanical response and deformation mechanisms of pure nickel under nanoindentation were systematically investigated using molecular dynamics(MD)simulations,with a particular focus on the novel interplay between c... THE mechanical response and deformation mechanisms of pure nickel under nanoindentation were systematically investigated using molecular dynamics(MD)simulations,with a particular focus on the novel interplay between crystallographic orientation,grain boundary(GB)proximity,and pore characteristics(size/location).This study compares single-crystal nickel models along[100],[110],and[111]orientations with equiaxed polycrystalline models containing 0,1,and 2.5 nm pores in surface and subsurface configurations.Our results reveal that crystallographic anisotropy manifests as a 24.4%higher elastic modulus and 22.2%greater hardness in[111]-oriented single crystals compared to[100].Pore-GB synergistic effects are found to dominate the deformation behavior:2.5 nm subsurface pores reduce hardness by 25.2%through stress concentration and dislocation annihilation at GBs,whereas surface pores enable mechanical recovery via accelerated dislocation generation post-collapse.Additionally,size-dependent deformation regimes were identified,with 1 nm pores inducing negligible perturbation due to rapid atomic rearrangement,in contrast with persistent softening in 2.5 nm pores.These findings establish atomic-scale design principles for defect engineering in nickel-based aerospace components,demonstrating how crystallographic orientation,pore configuration,and GB interactions collectively govern nanoindentation behavior. 展开更多
关键词 Pure nickel NANOINDENTATION molecular dynamics PORE grain boundary
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Enabling Intrinsic Antiferroelectricity in Two-dimensional NbOCl_(2):Molecular Dynamics Simulations based on Deep Learning Interatomic Potential
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作者 Jiawei Mao Yinglu Jia +2 位作者 Gaoyang Gou Shi Liu Xiao Cheng Zeng 《Chinese Physics Letters》 2026年第1期156-178,共23页
Compared to the well-studied two-dimensional(2D)ferroelectricity,the appearance of 2D antiferroelectricity is much rarer,where local dipoles from the nonequivalent sublattices within 2D monolayers are oppositely orien... Compared to the well-studied two-dimensional(2D)ferroelectricity,the appearance of 2D antiferroelectricity is much rarer,where local dipoles from the nonequivalent sublattices within 2D monolayers are oppositely oriented.Using NbOCl_(2) monolayer with competing ferroelectric(FE)and antiferroelectric(AFE)phases as a 2D material platform,we demonstrate the emergence of intrinsic antiferroelectricity in NbOCl_(2) monolayer under experimentally accessible shear strain,along with new functionality associated with electric field-induced AFE-to-FE phase transition.Specifically,the complex configuration space accommodating FE and AFE phases,polarization switching kinetics,and finite temperature thermodynamic properties of 2D NbOCl_(2) are all accurately predicted by large-scale molecular dynamics simulations based on deep learning interatomic potential model.Moreover,room temperature stable antiferroelectricity with low polarization switching barrier and one-dimensional collinear polarization arrangement is predicted in shear-deformed NbOCl_(2) monolayer.The transition from AFE to FE phase in 2D NbOCl_(2) can be triggered by a low critical electric field,leading to a double polarization–electric(P–E)loop with small hysteresis.A new type of optoelectronic device composed of AFE-NbOCl_(2) is proposed,enabling electric“writing”and nonlinear optical“reading”logical operation with fast operation speed and low power consumption. 展开更多
关键词 d monolayers local dipoles nonequivalent sublattices intrinsic antiferroelectricity two dimensional nbocl d antiferroelectricity experimentally accessible shear strainalong molecular dynamics simulations
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Rational design of VHL-recruiting KRAS^(G12C) proteolysis-targeting chimeras based on molecular dynamics simulation
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作者 Shiyang Sun Ning Yang +16 位作者 Yaqiu Mao Ting Wei Pengli Wei Tingting Yang Yixin Zhang Jian Yan Changkai Jia Yi Li Xu Cai Zhiyuan Zhao Xuesong Feng Xiaomei Zhuang Wenpeng Zhang Junhai Xiao Pengyun Li Zhibing Zheng Song Li 《Chinese Chemical Letters》 2026年第2期308-313,共6页
The von Hippel-Lindau tumor suppressor(VHL)has been extensively used to develop degraders targeting numerous proteins of interest.However,studies on the rational design of VHL-proteolysis-targeting chimeras(PROTACs)re... The von Hippel-Lindau tumor suppressor(VHL)has been extensively used to develop degraders targeting numerous proteins of interest.However,studies on the rational design of VHL-proteolysis-targeting chimeras(PROTACs)remain scarce.This study aimed to develop strategies to investigate VHL-recruiting PROTACs connecting with varying attachment sites on VHL ligands,which could be utilized for KRAS^(G12C) degraders development and expanded to additional targets.We developed a molecular dynamics(MD)-based strategy to explore the stability of ternary complexes induced by KRAS^(G12C) PROTACs with four distinct attachment sites of VH032.We found a potent degrader namely YN14-H,linked to hydroxyl group on VH032 benzene ring,exhibited the most superior ability of inducing ternary complexes,reflected by the lowest dissociation constant(Kd)for ternary complex induction and the highest AlphaScreen(AS)-based interaction.YN14-H inhibited cell growth with low nanomolar half maximal inhibitory concentration(IC_(50))and half maximal degradation concentration(DC_(50))values as well as>98%of maximum degradation(D_(max))in NCI-H358 and MIA PaCa-2 cells harboring KRAS^(G12C)-mutation.Mechanistically,YN14-H significantly induced apoptosis and inhibited the migratory capacity.Notably,YN14-H demonstrated favorable pharmacokinetic properties and excellent antitumor activity in vivo.Furthermore,bromodomain-containing protein 7(BRD7)and Bruton tyrosine kinase(BTK)degraders attached to distinct sites on VH032 further verified the rationality and universality of our MD-based strategies.Our findings demonstrated that YN14-H could serve as a promising candidate for the treatment of tumors with KRAS^(G12C)-mutation and present a strategy for the rational design of VHL-recruiting PROTACs that target additional proteins at distinct attachment sites. 展开更多
关键词 PROTACs VHL KRAS^(G12C) Rational drug design molecular dynamics
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Fluid migration in calcite nanopores under salinity gradients:Insights from molecular dynamics
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作者 Yi Chen Yan Zhang +1 位作者 Run-Sheng Han Lei Wang 《Acta Geochimica》 2026年第1期185-203,共19页
The migration mechanisms of ore-forming fluids have long been a focus in the field of ore deposit studies.Calcite is ubiquitously present in various types of rocks in the lithosphere,and the underlying mechanisms of i... The migration mechanisms of ore-forming fluids have long been a focus in the field of ore deposit studies.Calcite is ubiquitously present in various types of rocks in the lithosphere,and the underlying mechanisms of its influence on fluid migration are of crucial importance.While previous studies have revealed that salinity changes can modulate fluid migration,the underlying mechanisms remain poorly understood.We employ molecular dynamics simulations to elucidate how salinity variations in ore-forming fluids modulate the adsorption onto calcite nanopore walls,thereby revealing the microscopic mechanisms governing ore fluid transport through calcite nano-fractures.The results show that the adsorption energy Eint of the solution on the calcite surface increased from -14,948.84±182.48 kcal/mol to -12,144.08±118.2 kcal/mol as salinity increased,which is conducive to the long-range transport of the fluid in the calcite nanopore. 展开更多
关键词 Fluid transport dynamics Salinity gradient regulation Calcite nanopores molecular dynamics simulation
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Dislocation Propagation and Mechanical Properties in Poly(p-phenylene terephthalamide) Fibers: An All-atom Molecular Dynamics Simulation
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作者 Jia Wan Ran Chen +1 位作者 Chuan-Fu Luo Xiao-Niu Yang 《Chinese Journal of Polymer Science》 2026年第2期549-559,I0017,共12页
This study uses all-atom molecular dynamics simulations to investigate the dislocation propagation, stress transmission, and mechanical properties in poly(p-phenylene terephthalamide) fibers under uniaxial tension. Th... This study uses all-atom molecular dynamics simulations to investigate the dislocation propagation, stress transmission, and mechanical properties in poly(p-phenylene terephthalamide) fibers under uniaxial tension. The results indicate that the dislocation propagates and the stress transfers not only along the fiber axis but also between adjacent molecular chains through hydrogen bonds, demonstrating their influence on the yield behavior. As the degree of polymerization increases, breakage of covalent bonds and interchain slippage contribute to the yield of fibers together. This work provides theoretical guidance for the design and manufacturing of high-performance fibers. 展开更多
关键词 molecular dynamic simulation Poly(p-phenylene terephthalamide)fiber Mechanical property Hydrogen bond
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Applications of molecular dynamics simulation in studying shale oil reservoirs at the nanoscale:Advances,challenges and perspectives 被引量:1
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作者 Lu Wang Yi-Fan Zhang +6 位作者 Run Zou Yi-Fan Yuan Rui Zou Liang Huang Yi-Sheng Liu Jing-Chen Ding Zhan Meng 《Petroleum Science》 2025年第1期234-254,共21页
The global energy demand is increasing rapidly,and it is imperative to develop shale hydrocarbon re-sources vigorously.The prerequisite for enhancing the exploitation efficiency of shale reservoirs is the systematic e... The global energy demand is increasing rapidly,and it is imperative to develop shale hydrocarbon re-sources vigorously.The prerequisite for enhancing the exploitation efficiency of shale reservoirs is the systematic elucidation of the occurrence characteristics,flow behavior,and enhanced oil recovery(EOR)mechanisms of shale oil within commonly developed nanopores.Molecular dynamics(MD)technique can simulate the occurrence,flow,and extraction processes of shale oil at the nanoscale,and then quantitatively characterize various fluid properties,flow characteristics,and action mechanisms under different reservoir conditions by calculating and analyzing a series of MD parameters.However,the existing review on the application of MD simulation in shale oil reservoirs is not systematic enough and lacks a summary of technical challenges and solutions.Therefore,recent MD studies on shale oil res-ervoirs were summarized and analyzed.Firstly,the applicability of force fields and ensembles of MD in shale reservoirs with different reservoir conditions and fluid properties was discussed.Subsequently,the calculation methods and application examples of MD parameters characterizing various properties of fluids at the microscale were summarized.Then,the application of MD simulation in the study of shale oil occurrence characteristics,flow behavior,and EOR mechanisms was reviewed,along with the elucidation of corresponding micro-mechanisms.Moreover,influencing factors of pore structure,wall properties,reservoir conditions,fluid components,injection/production parameters,formation water,and inorganic salt ions were analyzed,and some new conclusions were obtained.Finally,the main challenges associated with the application of MD simulations to shale oil reservoirs were discussed,and reasonable prospects for future MD research directions were proposed.The purpose of this review is to provide theoretical basis and methodological support for applying MD simulation to study shale oil reservoirs. 展开更多
关键词 molecular dynamics Shale oil reservoirs NANOPORES Enhanced oil recovery Fluid flow behavior Shale oil occurrence
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Molecular Dynamics Simulations of Micromechanical Behaviours for AlCoCrFeNi_(2.1)High Entropy Alloy during Nanoindentation 被引量:1
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作者 Ji-Peng Yang Hai-Feng Zhang +1 位作者 Hong-Chao Ji Nan Jia 《Acta Metallurgica Sinica(English Letters)》 2025年第2期218-232,共15页
Eutectic high entropy alloys are noted for their excellent castability and comprehensive mechanical properties.The excellent mechanical properties are closely related to the activation and evolution of deformation mec... Eutectic high entropy alloys are noted for their excellent castability and comprehensive mechanical properties.The excellent mechanical properties are closely related to the activation and evolution of deformation mechanisms at the atomic scale.In this work,AlCoCrFeNi2.1 alloy is taken as the research object.The mechanical behaviors and deformation mechanisms of the FCC and B2 single crystals with different orientations and the FCC/B2 composites with K-S orientation relationship during nanoindentation processes are systematically studied by molecular dynamics simulations.The results show that the mechanical behaviors of FCC single crystals are significantly orientation-dependent,meanwhile,the indentation force of[110]single crystal is the lowest at the elastic-plastic transition point,and that for[100]single crystal is the lowest in plastic deformation stage.Compared with FCC,the stress for B2 single crystals at the elastic-plastic transition point is higher.However,more deformation systems such as stacking faults,twins and dislocation loops are activated in FCC single crystal during the plastic deformation process,resulting in higher indentation force.For composites,the flow stress increases with the increase of B2 phase thickness during the initial stage of deformation.When indenter penetrates heterogeneous interface,the significantly increased deformation system in FCC phase leads to a significant increase in indentation force.The mechanical behaviors and deformation mechanisms depend on the component single crystal.When the thickness of the component layer is less than 15 nm,the heterogeneous interfaces fail to prevent the dislocation slip and improve the indentation force.The results will enrich the plastic deformation mechanisms of multi-principal eutectic alloys and provide guidance for the design of nanocrystalline metallic materials. 展开更多
关键词 High entropy alloy Mechanical behavior Plastic deformation mechanism NANOINDENTATION molecular dynamics simulation
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Graphene Size Dependent Hardness and Strengthening Mechanisms of Cu/Graphene Composites:A Molecular Dynamics Study
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作者 Zhang Shuang Chang Guo +5 位作者 Li Liang Li Xiang Peng Haoran Chen Kaiyun Yang Nan Huo Wangtu 《稀有金属材料与工程》 北大核心 2025年第1期17-26,共10页
The extraordinary strength of metal/graphene composites is significantly determined by the characteristic size,distribution and morphology of graphene.However,the effect of the graphene size/distribution on the mechan... The extraordinary strength of metal/graphene composites is significantly determined by the characteristic size,distribution and morphology of graphene.However,the effect of the graphene size/distribution on the mechanical properties and related strengthening mechanisms has not been fully elucidated.Herein,under the same volume fraction and distribution conditions of graphene,molecular dynamics simulations were used to investigate the effect of graphene sheet size on the hardness and deformation behavior of Cu/graphene composites under complex stress field.Two models of pure single crystalline Cu and graphene fully covered Cu matrix composite were constructed for comparison.The results show that the strengthening effect changes with varying the graphene sheet size.Besides the graphene dislocation blocking effect and the load-bearing effect,the deformation mechanisms change from stacking fault tetrahedron,dislocation bypassing and dislocation cutting to dislocation nucleation in turn with decreasing the graphene sheet size.The hardness of Cu/graphene composite,with the graphene sheet not completely covering the metal matrix,can even be higher than that of the fully covered composite.The extra strengthening mechanisms of dislocation bypassing mechanism and the stacking fault tetrahedra pinning dislocation mechanism contribute to the increase in hardness. 展开更多
关键词 Cu/graphene composites graphene size HARDNESS strengthening mechanism molecular dynamics
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Active species in carbon nanotube nucleation from acetylene:Insights from nanoreactor molecular dynamics
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作者 LI Luotong LEI Tingyu +3 位作者 BAI Jiawei LIU Xingchen TENG Botao WEN Xiaodong 《燃料化学学报(中英文)》 北大核心 2025年第12期1843-1852,共10页
Carbon nanotube formation exemplifies atomically precise self-assembly,where atomic interactions dynamically engineer nanoscale architectures with emergent properties that transcend classical material boundaries.Howev... Carbon nanotube formation exemplifies atomically precise self-assembly,where atomic interactions dynamically engineer nanoscale architectures with emergent properties that transcend classical material boundaries.However,elucidating the transient molecular intermediates remains a critical mechanistic frontier.This study investigates the atomic-scale nucleation process of single-walled carbon nanotubes(SWCNTs)from acetylene on iron(Fe)clusters,utilizing GFN(-x)TB-based nanoreactor molecular dynamics simulations.The simulations reveal a consistent nucleation pathway,regardless of iron cluster size(Fe_(13),Fe_(38),Fe_(55)),where the chemisorption and dissociation of acetylene molecules on the Fe clusters lead to the formation of C_(2)H and C_(2)intermediates.These species then undergo oligomerization,initiating the growth of carbon chains.As the chains cross-link and cyclize,five-membered carbon rings are preferentially formed,which eventually evolve into six-membered rings and more complex sp2-hybridized carbon networks,resembling the cap structures of nascent SWCNTs.Although the nucleation mechanism remains similar across all cluster sizes,larger clusters show enhanced catalytic activity,leading to higher molecular weight hydrocarbons and more extensive carbocyclic networks due to their higher density of active sites per reacting molecule.Crucially,the study highlights the role of C_(2)H as the key active species in the carbon network formation process.These findings offer critical insights into the initial stages of SWCNT nucleation,contributing to a deeper understanding of the mechanisms driving SWCNT growth and guiding the development of optimized synthetic strategies. 展开更多
关键词 single-walled carbon nanotubes molecular dynamics simulation nucleation mechanism acetylene dissociation
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Molecular docking and molecular dynamics studies of major phytoconstituents of Nilavembu Kudineer against COVID-19 protein targets
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作者 Sampathkumar Ranganathan Marie Victoria Rani Auroquiaraj +2 位作者 Ramya Chandra Charles Mariasoosai Chitra Balasubramanian Chandramohan Batrachalam 《Infectious Diseases Research》 2025年第2期46-59,共14页
Background:In this present study,we have screened major phytoconstituents of Nilavembu Kudineer against critical COVID-19 target proteins that cause severe pneumonia globally.In addition,a human receptor protein that ... Background:In this present study,we have screened major phytoconstituents of Nilavembu Kudineer against critical COVID-19 target proteins that cause severe pneumonia globally.In addition,a human receptor protein that facilitates viral entry into the host cell was also targeted.Methods:Phytoconstituents derived from Nilavembu Kudineer formulation were docked against 12 major proteins,which help viral entry,viral proliferation,and a human receptor facilitate the viral entry into the host cells.The major metabolites of Nilavembu Kudineer were retrieved based on literature from the PubChem database.The docked complex was subjected to MD simulation studies to verify its binding mode and the stability of the interactions.The binding energy analysis was performed to estimate the binding affinity between the compounds and their respective receptors using MM/GBSA.Results:Docking studies have shown that three major plants in the polyherbal formulation,Andrographis paniculata,Mollugo cerviana,and Zingiber officinale,have 14 potential compounds that have better binding affinity against COVID-19 proteins and their host receptor protein.MD studies and binding energy calculations also confirmed that these compounds possess better stability and strong binding energy with these proteins.Conclusion:In silico analyses suggest that phytoconstituents from Nilavembu Kudineer possess promising multi-target antiviral activity against COVID-19.These findings provide a rationale for further experimental studies to validate their therapeutic potential for the treatment of COVID-19. 展开更多
关键词 COVID-19 PNEUMONIA Nilavembu Kudineer phyto-constituents molecular docking molecular dynamics DRUGS
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Modeling segregated solutes in plastically deformed alloys using coupled molecular dynamics-Monte Carlo simulations
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作者 Hariprasath Ganesan Godehard Sutmann 《Journal of Materials Science & Technology》 2025年第10期98-108,共11页
A microscopic understanding of the complex solute-defect interaction is pivotal for optimizing the alloy’s macroscopic mechanical properties.Simulating solute segregation in a plastically deformed crystalline system ... A microscopic understanding of the complex solute-defect interaction is pivotal for optimizing the alloy’s macroscopic mechanical properties.Simulating solute segregation in a plastically deformed crystalline system at atomic resolution remains challenging.The objective is to efficiently model and predict a phys-ically informed segregated solute distribution rather than simulating a series of diffusion kinetics.To ad-dress this objective,we coupled molecular dynamics(MD)and Monte Carlo(MC)methods using a novel method based on virtual atoms technique.We applied our MD-MC coupling approach to model off-lattice carbon(C)solute segregation in nanoindented Fe-C samples containing complex dislocation networks.Our coupling framework yielded the final configuration through efficient parallelization and localized en-ergy computations,showing C Cottrell atmospheres near dislocations.Different initial C concentrations resulted in a consistent trend of C atoms migrating from less crystalline distortion to high crystalline distortion regions.Besides unraveling the strong spatial correlation between local C concentration and defect regions,our results revealed two crucial aspects of solute segregation preferences:(1)defect ener-getics hierarchy and(2)tensile strain fields near dislocations.The proposed approach is generic and can be applied to other material systems as well. 展开更多
关键词 molecular dynamics Monte Carlo Virtual atoms Solute segregation Cottrell atmosphere Off-lattice
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Green and low-viscosity deep eutectic solvents for the extraction of quinoline from wash oil:Experimental investigation and molecular dynamics simulation
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作者 Fan Yang Mengsha Han +3 位作者 Xudong Zhang Gang Liu Yugao Wang Jun Shen 《Chinese Journal of Chemical Engineering》 2025年第11期66-79,共14页
This study explores green and low-viscosity deep eutectic solvents(DESs) for the efficient extraction of quinoline(QUI) from wash oil.The hydrogen bond donors and acceptors constituting DESs were initially screened ba... This study explores green and low-viscosity deep eutectic solvents(DESs) for the efficient extraction of quinoline(QUI) from wash oil.The hydrogen bond donors and acceptors constituting DESs were initially screened based on thermodynamic properties predicted by the conductor-like screening model for real solvents(COSMO-RS),followed by further selection considering the viscosity and cost of the formed DESs.Phase equilibrium experiments showed that the DES composed of triethylmethylammonium chloride and formic acid exhibited the best extraction performance among the selected candidates.Key extraction parameters were optimized experimentally,achieving a maximum QUI extraction efficiency of 97.18% under mild conditions.Molecular dynamics simulations revealed that the interactions between quaternary ammonium cations and QUI play a crucial role in the extraction mechanism.This study provides insights into the use of DESs for QUI extraction and demonstrates their potential for application to other coal tar derivatives. 展开更多
关键词 Deep eutectic solvents Wash oil COSMO-RS model QUINOLINE EXTRACTION molecular dynamics simulation
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Hydrogen peroxide activation of waste tire crumb rubber for improving compatibility with bitumen: Laboratory and molecular dynamics insights
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作者 Nie Tian Piergiorgio Tataranni Cesare Sangiorgi 《Journal of Road Engineering》 2025年第2期244-260,共17页
Enhancing rubber-bitumen compatibility is crucial to improve pavement performance and durability.To investigate the compatibility improvement between H2O2-activated waste crumb rubber(AWCR)and bitumen,coarse and fine ... Enhancing rubber-bitumen compatibility is crucial to improve pavement performance and durability.To investigate the compatibility improvement between H2O2-activated waste crumb rubber(AWCR)and bitumen,coarse and fine waste crumb rubber(WCR)were treated and analyzed through multi-scale characterization and molecular simulation.Microstructure and chemical changes of WCR and AWCR were analyzed with scanning electron microscope(SEM),contact angle tests and Fourier transform infrared spectroscopy(FTIR).Compatibility was also indirectly evaluated through modified boiling tests and storage stability tests.Besides,molecular dynamics was used to explore the interaction between WCR/AWCR and bitumen.SEM,contact angle,and FTIR results showed bond breakage of C=C and C–C and increased polar groups like–OH and–COOH in AWCR,resulting in a rougher texture and higher surface energy.Compared with WCR,AWCR showed a lower bitumen stripping rate after boiling,and the binder with AWCR also had a lower softening point difference and segregation rate after storage.Molecular dynamics simulations further confirmed that AWCR has a closer solubility parameter and higher binding energy to bitumen than WCR,reflected in a relatively slower diffusion rate.This study provides comprehensive evidence for an eco-friendly method of WCR surface treatment for more efficient recycling of tire rubber in asphalt pavements. 展开更多
关键词 Waste crumb rubber Surface treatment Hydrogen peroxide Compatibility molecular dynamics Asphalt pavement
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Effect of impact velocity on spall behaviors of nanocrystalline iron:Molecular dynamics study
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作者 Li-Qiong Chen Kui Zhao +3 位作者 Kai Zhang Ze-Zhi Wen Hou-Jin Mei Zhen-Bao Xiong 《Chinese Physics B》 2025年第9期374-384,共11页
This study investigates the effect of shock velocity(u_(p))on damage evolution mechanisms in nanocrystalline iron via molecular dynamics simulations.As u_(p)increases,shock wave propagation accelerates,and stress dist... This study investigates the effect of shock velocity(u_(p))on damage evolution mechanisms in nanocrystalline iron via molecular dynamics simulations.As u_(p)increases,shock wave propagation accelerates,and stress distribution transitions from grain boundary concentration to homogeneity.This causes a transition in fracture mode from cleavage to ductile behavior.When u_(p)exceeds 1.5 km·s^(-1),micro-spallation emerges as the dominant failure mode.During micro-spallation,localized melting within the material impedes the propagation of the shock wave.As u_(p)increases,the growth rate of the void volume fraction initially rises but then decreases.Higher u_(p)leads to earlier void nucleation.At lower u_(p),the cavitation of the model is mainly characterized by the growth and penetration of a few voids.With increasing u_(p),the number of voids grows,and their interactions expand the delamination damage region.The spall strength demonstrates stage-specific dependence on u_(p).In the classical spallation stage(C_Ⅰ),temperature softening reduces spall strength.In the plastic strengthening regime(C_Ⅱ),strain hardening enhances spall strength.In the micro-spallation stage(M_Ⅲ),further increases in u_(p)cause melting during tensile and compressive phases,reducing spall strength.Finally,in the compressionmelting regime(M_Ⅳ),local temperatures exceed the melting point,diminishing plastic damage and accelerating spall strength reduction.This study provides new insights into the dynamic response of nanocrystalline iron. 展开更多
关键词 nanocrystalline iron shock response FRAGMENTATION SPALLATION molecular dynamics
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Investigating the potential of Euphorbia helioscopia intervention in gastric cancer with positive lymph node metastasis:insights from molecular dynamics simulation
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作者 Yijun Zheng Zheyuan Wang +5 位作者 Mancai Wang Qi Xiao Hongyang Deng Jipin Li Lingyi Zhang Youcheng Zhang 《Journal of Chinese Pharmaceutical Sciences》 2025年第7期644-663,共20页
Euphorbia helioscopia,a natural plant recognized for its anti-tumor properties,has been extensively investigated in various cancers.However,its therapeutic potential in gastric cancer with positive lymph node metastas... Euphorbia helioscopia,a natural plant recognized for its anti-tumor properties,has been extensively investigated in various cancers.However,its therapeutic potential in gastric cancer with positive lymph node metastasis remains underexplored.This study aimed to elucidate the role of E.helioscopia in treating gastric cancer with lymph node metastasis using an integrative approach that combined network pharmacology,molecular docking,and molecular dynamics simulations.Initially,shared target data between E.helioscopia and gastric cancer with positive lymph node metastasis were identified and systematically analyzed.Subsequently,molecular docking was conducted to validate the interactions between key components and targets.Finally,molecular dynamics simulations were employed,with binding free energy calculations performed using the MM-PBSA algorithm.The findings revealed that the primary bioactive compounds of E.helioscopia in this context included quercetin and luteolin,targeting core molecules such as EGFR and MMP9.Key pathways implicated in its mechanism of action included resistance to EGFR tyrosine kinase inhibitors,among others.Molecular docking demonstrated robust binding affinity between the active compounds and critical targets,with molecular dynamics and binding free energy analyses highlighting a particularly stable interaction between luteolin and MMP9.In conclusion,E.helioscopia exhibited a multi-component,multi-target,and multi-pathway therapeutic profile in treating gastric cancer with positive lymph node metastasis.These findings offered valuable theoretical insights supporting its potential clinical application in oncology. 展开更多
关键词 Euphorbia helioscopia Lymph node metastasis Gastric cancer molecular dynamics Network pharmacology molecular docking
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A molecular dynamics simulation route towards Eu-doped multi-component transparent spectral conversion glass-ceramics
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作者 Xiuxia Xu Chenhao Wang +7 位作者 Di Wang Wenyan Zheng Zhiyu Liu Jincheng Du Xusheng Qiao Xianping Fan Zhiyu Wang Guodong Qian 《Journal of Rare Earths》 2025年第1期146-152,I0006,共8页
Eu^(2+)doped fluorosilicate glass-ceramics containing BaF_(2) nanocrystals have high potential as spectral conversion materials for organic solar cells.However,it is difficult to realize the efficient design of BaF_(2... Eu^(2+)doped fluorosilicate glass-ceramics containing BaF_(2) nanocrystals have high potential as spectral conversion materials for organic solar cells.However,it is difficult to realize the efficient design of BaF_(2):Eu^(2+)doped fluorosilicate glass and to vividly observe the glass microstructure in experiment through traditional trial-and-error glass preparation method.BaF_(2):Eu^(2+)doped fluorosilicate glassceramics with high transparency,and high photoluminescence(PL)performance were predicted,designed and prepared via molecular dynamics(MD)simulation method.By MD simulation prediction,self-organized nanocrystallization was realized to inhibit the abnormal growth of nanocrystals due to[AlO_(4)]tetrahedra formed in the fluoride-oxide interface.The introduction of NaF reduces the effective phonon energy of the glass because Na+will prompt Al^(3+)to migrate from the fluoride phase to the silicate phase and interface.The local environment of Eu^(2+)is optimized by predicting the doping concentration of EuF_(3) and 2 mol%EuF3 is the best concentration in this work.Glass-ceramics sample GC2Eu as spectral conversion layer was successfully applied on organic solar cells to obtain more available visible phonons with a high photoelectric conversion efficiency(PCE).This work confirms the guidance of molecular dynamics simulation methods for fluorosilicate glasses design. 展开更多
关键词 molecular dynamics simulation Fluorosilicateglass Spectral conversion Organic solarcell RAREEARTHS
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The Preparation of High-performance Mesoporous Proposed Pseudo-boehmite(γ-AlOOH)Modified by H_(2)O_(2) Based on Molecular Dynamics
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作者 ZENG Fanbiao LIU Zhanwei +3 位作者 YAN Hengwei LI Lan LI Mengnan HU Mingyi 《Journal of Wuhan University of Technology(Materials Science)》 2025年第6期1739-1749,共11页
To efficiently address the current high cost associated with preparing pseudo-boehmite from organic aluminum,a low-cost alternative,AlCl_(3),is employed as the raw material.The sol-gel method is utilized,and H_(2)O_(2... To efficiently address the current high cost associated with preparing pseudo-boehmite from organic aluminum,a low-cost alternative,AlCl_(3),is employed as the raw material.The sol-gel method is utilized,and H_(2)O_(2)is incorporated for the modification of pseudo-boehmite.The modification mechanism is thoroughly investigated through the use of X-ray powder diffractometer,scanning electron microscope,and BET data analysis,as well as molecular dynamics simulations.Under specific conditions(temperature at 80°C,pH=7,and H_(2)O_(2)volume ratios of 0.5:1,1:1,and 2:1),mesoporous pseudo-boehmite is synthesized with a specific surface area of 227 m^(2)/g,a pore volume of 0.281 cm^(3)/g,a pore size of 6.78 nm,and a peptizing index of 99.47%.A novel and innovative methodology for the cost-effective production of high-performance alumina is offered through the approach. 展开更多
关键词 aluminum oxide molecular dynamics mesoporous material PSEUDO-BOEHMITE porous structures
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Rheological behaviors of Na-montmorillonite considering particle interactions:A molecular dynamics study
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作者 Siqi Zhang Daoyuan Tan +2 位作者 Honghu Zhu Huafu Pei Bin Shi 《Journal of Rock Mechanics and Geotechnical Engineering》 2025年第7期4657-4671,共15页
Understanding the rheology of bentonite suspensions is crucial for ensuring the safety of engineering practices.However,the rheological mechanisms of bentonite remain unclear due to the limitations of conventional exp... Understanding the rheology of bentonite suspensions is crucial for ensuring the safety of engineering practices.However,the rheological mechanisms of bentonite remain unclear due to the limitations of conventional experimental techniques,particularly in assessing the microscopic interactions between clay particles and their impact on rheological properties.In this paper,the rheological behaviors of Namontmorillonite were studied with a focus on interparticle interactions.Both equilibrium molecular dynamics(MD)and non-equilibrium MD simulations were conducted to understand the physical properties of Na-montmorillonite under zero shear and various shear rates,respectively.The interaction between two parallel clay particles was determined in simulations,indicating that the classical Darjaguin-Landau-Verwey-Overbeek(DLVO)theory underestimates the interactions for a small separation distance.Na-montmorillonite exhibits a typical shear thinning behavior under shearing.However,as water content increases,it begins to behave more like liquid water.The yield stress of montmorillonite,as determined by the Bingham model,was found to be linearly related to the interaction pressures between clay particles.Besides MD simulations,the microstructure of clay suspension was further quantified using the separation distance and incline angle between non-parallel clay particles.Based on MD results and the quantified clay structure,a model was developed to estimate the yield stress of montmorillonite considering various influence factors,including electrolyte concentration,temperature,and solid fraction.Finally,from a comparison with calculated and experimental data,the results confirm the good performance of the proposed model.These findings provide significant insights for understanding the rheological soil behaviors and evaluating the yield stress of bentonite suspensions. 展开更多
关键词 Rheological behavior Yield stress molecular dynamics Particle interactions Darjaguin-Landau-Verwey-Overbeek(DLVO)theory Microstructure Montmorillonite suspension
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Molecular dynamics insights into wax formation-How polymeric inhibitors shape crude oil flow
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作者 Wyclif Kiyingi Ji-Xiang Guo +1 位作者 Rui-Ying Xiong Chen-Hao Gao 《Petroleum Science》 2025年第5期2233-2245,共13页
Molecular-level interactions between polymeric inhibitors and wax crystals are essential for mitigating wax deposition in crude oils,a major operational and environmental challenge.This study investigates the mechanis... Molecular-level interactions between polymeric inhibitors and wax crystals are essential for mitigating wax deposition in crude oils,a major operational and environmental challenge.This study investigates the mechanisms by which specific inhibitors target wax crystals to prevent aggregation.Extracted wax and inhibitor were characterized using gas chromatography,X-ray diffraction,and spectroscopy to determine the molecular structures.The wax primarily comprised of straight-chain nC28 alkanes,while the inhibitor was an ethylene/vinyl acetate copolymer.Rheological tests demonstrated a reduced gelation point upon inhibitor addition.Molecular dynamics(MD)simulations,performed using the COMPASS II force field,revealed interactions at the molecular level.Structural validation of molecules was done through comparative analysis of the experimental infrared and simulated vibrational analysis spectra whereas that of the rhombohedral wax crystal was achieved using the Pawley method,yielding a Profile R-factor of 9.26%.Morphological studies revealed five symmetrically unique facets,with the(110)plane being the fastestgrowing due to its inter-planar distance and attachment energy(-157.25 kcal/mol).Adsorption energy calculations(-180 kcal/mol)confirmed that the inhibitor effectively disrupted crystal growth on the surface by adsorbing its polar section onto the wax surface while repelling the non-polar groups,thereby reducing waxaggregation. 展开更多
关键词 molecular dynamics COLLOIDS Crystal growth Adsorption energy Polymeric inhibitor
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