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基于生物信息学分析MIA3在泛癌中的表达和临床意义
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作者 陈功华 欧鹏飞 +2 位作者 甄瑶 夏杰 满竞 《吉首大学学报(自然科学版)》 2025年第2期78-89,共12页
为了探究MIA3在泛癌中的表达情况及作用,通过搜集TCGA等数据库,采用生物信息学方法揭示MIA3表达与泛癌临床预后及免疫的关联性.结果表明,MIA3在浸润性乳腺癌、膀胱尿路上皮癌、食管癌、头颈鳞状细胞癌、肾透明细胞癌、混合肾癌、肝细胞... 为了探究MIA3在泛癌中的表达情况及作用,通过搜集TCGA等数据库,采用生物信息学方法揭示MIA3表达与泛癌临床预后及免疫的关联性.结果表明,MIA3在浸润性乳腺癌、膀胱尿路上皮癌、食管癌、头颈鳞状细胞癌、肾透明细胞癌、混合肾癌、肝细胞肝癌、肺腺癌、肺鳞癌、前列腺癌、胃癌、胃和食管癌中表达显著上调,在肾嫌色细胞癌和甲状腺癌中表达显著下调;子宫内膜癌的MIA3突变频率最高,达11.4%,胃癌次之,为6.1%;在大多数癌症(如卵巢浆液性囊腺癌、脑低级别胶质瘤、多形性胶质母细胞瘤、肾乳头状细胞癌、混合肾癌等)中,MIA3表达与DNA甲基化酶表达呈正相关关系;MIA3高表达是肾上腺皮质癌、肾嫌色细胞癌、肾乳头状细胞癌、混合肾癌、脑低级别胶质瘤等多种癌症的危险因子,会导致这些患者预后差,但在皮肤黑色素瘤和卵巢浆液性囊腺癌中,MIA3低表达会导致这些患者预后差;在多种癌症中,MIA3的表达与B细胞、CD4+T淋巴细胞、CD8+T淋巴细胞、中性粒细胞、树突状细胞、巨噬细胞的浸润明显相关;在结直肠癌、混合肾癌、头颈鳞状细胞癌、肾透明细胞癌、睾丸生殖细胞肿瘤、肾嫌色细胞癌中,MIA3表达与基质评分和免疫评分均呈正相关关系.MIA3可作为多种癌症的预后生物标志物和治疗新靶标,但仍需进一步研究验证. 展开更多
关键词 mia3 泛癌 生物信息学 免疫细胞 浸润
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Four enzymes from button bush enable de novo biosynthesis of spirooxindole alkaloids in yeast
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作者 Alyssa Dawn Seveck Jacob Owen Perley +2 位作者 Di Gao Jiazhang Lian Yang Qu 《BioDesign Research》 2025年第4期31-38,共8页
Oxindoles are a structurally unique subclass of monoterpenoid indole alkaloids(MIAs)with significant medicinal values such as neuroprotective and anticancer properties and are predominantly found in the Rubiaceae plan... Oxindoles are a structurally unique subclass of monoterpenoid indole alkaloids(MIAs)with significant medicinal values such as neuroprotective and anticancer properties and are predominantly found in the Rubiaceae plant family.Recent research has only just begun to uncover the biosynthetic pathways of this complex MIA subclass.Here,we report the discovery,characterization,and functional reconstitution of a four-enzyme pathway from Cephalanthus occidentalis(button bush)that enables the complete de novo biosynthesis of heteroyohimbine-type oxindole alkaloids in engineered yeast.Through transcriptomic mining and biochemical validation,we identified and characterized an ajmalicine synthase(CoAJS),a heteroyohimbine/yohimbine/corynanthe C3-oxidase(CoHYC3O),a C3-reductase(CoHYC3R),and an oxindole synthase(CoOIS)capable of converting strictosidine aglycone into 3-epi-ajmalicine and subsequently into the oxindole alkaloids mitraphylline and isomitraphylline.Saturation kinetics of CoOIS revealed comparable catalytic efficiencies for 3-epi-ajmalicine and its C20 epimer akuammigine,indicating substrate tolerance within the heteroyohimbine subclass.Yeast-based reconstruction of the pathway successfully yielded both mitraphylline epimers and the spirooxindole uncarine F.This work elu-cidates the enzymatic logic behind oxindole formation and expands the toolkit for MIA scaffold diversification and synthetic biology. 展开更多
关键词 Monoterpenoid indole alkaloids Spirooxindole MIA C3-epimerization de novo oxindole biosynthesis Cytochrome P450 monooxygenase
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