Methanogenic endosymbionts are the only known intracellular archaeans and are especially common in anaerobic ciliated protists.Studies on the evolution of associations between anaerobic ciliates and their methanogenic...Methanogenic endosymbionts are the only known intracellular archaeans and are especially common in anaerobic ciliated protists.Studies on the evolution of associations between anaerobic ciliates and their methanogenic endosymbionts offer an excellent opportunity to broaden our knowledge about symbiosis theory and adaptation of eukaryotes to anoxic environments.Here,the diversity of methanogenic endosymbionts was analyzed with the addition of nine anaerobic ciliate populations that were newly studied by various methods.Results showed that diverse anaerobic ciliates host methanogenic endosymbionts that are limited to a few genera in orders Methanomicrobiales,Methanobacteriales,and Methanosarcinales.For the first time,anaerobic ciliates of the classes Muranotrichea and Prostomatea were found to host methanogenic endosymbionts.Distinct origins of endosymbiosis were revealed for classes Armophorea and Plagiopylea.We posit that armophoreans and plagiopyleans might have harbored Methanoregula(order Methanomicrobiales)and Methanocorpusculum(order Metha-nomicrobiales),respectively,as methanogenic endosymbionts at the beginning of their evolution.Subsequently,independent endosymbiont replacement events occurred in methanogen-ciliate associations,probably due to ecological transitions,species radiation of ciliate hosts,and vertical transmission bottlenecks of endosymbionts.Our results shed light on the evolution of associations between anaerobic ciliates and methanogens,and identifies the necessary preconditions for illustrating mecha-nisms by which endosymbioses between these partners were established.展开更多
Background The red macroalgae Asparagopsis is an effective methanogenesis inhibitor due to the presence of halogenated methane(CH_(4))analogues,primarily bromoform(CHBr_(3)).This study aimed to investigate the degrada...Background The red macroalgae Asparagopsis is an effective methanogenesis inhibitor due to the presence of halogenated methane(CH_(4))analogues,primarily bromoform(CHBr_(3)).This study aimed to investigate the degradation process of CHBr3 from A taxiformis in the rumen and whether this process is diet-dependent.An in vitro batch culture system was used according to a 2×2 factorial design,assessing two A taxiformis inclusion rates[0(CTL)and 2%DM diet(AT)]and two diets[high-concentrate(HC)and high-forage diet(HF)].Incubations lasted for 72 h and samples of headspace and fermentation liquid were taken at 0,0.5,1,3,6,8,12,16,24,48 and 72 h to assess the pattern of degradation of CHBr_(3) into dibromomethane(CH_(2)Br_(2))and fermentation parameters.Additionally,an in vitro experiment with pure cultures of seven methanogens strains(Methanobrevibacter smithii,Methanobrevibacter ruminantium,Methanosphaera stadtmanae,Methanosarcina barkeri,Methanobrevibacter millerae,Methanorhermobacter wolfei and Methanobacterium mobile)was conducted to test the effects of increasing concentrations of CHBr3(0.4,2,10and 50μmol/L).Results The addition of AT significantly decreased CH_(4) production(P=0.002)and the acetate:propionate ratio(P=0.003)during a 72-h incubation.The concentrations of CHBr_(3) showed a rapid decrease with nearly 90%degraded within the first 3 h of incubation.On the contrary,CH_(2)Br_(2) concentration quickly increased during the first 6 h and then gradually decreased towards the end of the incubation.Neither CHBr_(3) degradation nor CH_(2)Br_(2) synthesis were affected by the type of diet used as substrate,suggesting that the fermentation rate is not a driving factor involved in CHBr_(3)degradation.The in vitro culture of methanogens showed a dose-response effect of CHBr3 by inhibiting the growth of M.smithii,M.ruminantium,M.stadtmanae,M.barkeri,M.millerae,M.wolfei,and M.mobile.Conclusions The present work demonstrated that CHBr_(3) from A.taxiformis is quickly degraded to CH_(2)Br_(2)in the rumen and that the fermentation rate promoted by different diets is not a driving factor involved in CHBr_(3)degradation.展开更多
The objective of the present study was to examine the effect of different weaning methods on the ruminal methanogenic archaea composition and diversity in Holstein calves.Thirty-six newborn Holstein bull calves were a...The objective of the present study was to examine the effect of different weaning methods on the ruminal methanogenic archaea composition and diversity in Holstein calves.Thirty-six newborn Holstein bull calves were assigned to 1 of 3 treatments:(1)conventional weaning(d 56)and fed a high proportion of solid feed(CWS);(2)conventional weaning(d 56)and fed a high proportion of liquid feed(CWL);(3)early weaning(d 42)and fed with a high proportion of solid feed(EWS).High-throughput sequencing of the methyl coenzyme M reductase(mcr A)gene,which encodes theα-subunit of methyl coenzyme M reductase-the enzyme that catalyzes the final step in methanogenesis was used to determine the composition and diversity of rumen methanogens.No significant difference(P>0.05)was observed for operational taxonomic units(OTUs)or richness indices,but diversity indices increased(P<0.05)for calves fed high dietary solids.Predominant families across the three treatments were Methanobacteriaceae,Thermoplasmataceae and Methanomassiliicoccaceae.Calves in the EWS treatment had a higher(P<0.05)relative abundance of Methanobrevibacter sp.strain AbM4 and Methanosphaera stadtmanae,while calves in the CWL treatment had a higher(P<0.05)abundance of Methanosphaera sp.strain SM9.A positive(P<0.05)relationship was identified between butyrate and Methanobrevibacter sp.strain AbM4.In conclusion,the composition and diversity of methanogens in the rumen of Holstein calves varied under the different weaning methods.This study identified a positive relationship between butyrate and Methanobrevibacter sp.strain AbM4,potentially reflecting correlations between ruminal fermentation variables and methanogenesis function.These in-depth analyses provide further understanding of weaning methods for intensified production systems.展开更多
Coke plant effluents with high contents of organic compounds are mainly treated by biological aerobic fermentation after physical pre-treatment. In this study, a brown coal condensate wastewater from a low temperature...Coke plant effluents with high contents of organic compounds are mainly treated by biological aerobic fermentation after physical pre-treatment. In this study, a brown coal condensate wastewater from a low temperature coking process was fermented under methanogenic conditions in discontinuous experiments. By this fermentation, acetate, propionate, and the main polyphenolic compounds （catechol, resorcinol and hydroquinone） were degraded to a level below the detection limit. The COD was reduced by 72% with a residual concentration of 2.1 g/L. This anaerobic fermented wastewater had a residual BOD5 of 0.66 g/L and 2.2 L CH4 were formed per litre of wastewater. An abiotic pre-treatment for this wastewater with air had a negative effect on the COD reduction and decrease of colour on the methanogenic fermentation due to the autoxidation of polyphenolic compounds to humic-like compounds. This study showed that methanogenic fermentations in the treatment sequence of brown coal coking wastewaters could reduce energy consumption for aeration in further treatment processes and had the potential for a better effluent quality due to a less formation of recalcitrant humic-like compounds.展开更多
A series of batch experiments were conducted in 125 mL serum bottles to assess the toxicity of different concentrations of ammonia nitrogen to the specific methanogenic activity of anaerobic granular sludge from upflo...A series of batch experiments were conducted in 125 mL serum bottles to assess the toxicity of different concentrations of ammonia nitrogen to the specific methanogenic activity of anaerobic granular sludge from upflow anaerobic sludge bed（UASB） and expanded granular sludge bed（EGSB） reactors. The effects of pH value and temperature on toxicity of ammonia nitrogen to anaerobes were investigated. The results show that the specific methanogenic activity of anaerobic granular sludge suffers inhibition from ammonia nitrogen, the concentrations of ammonia nitrogen that produce 50 % inhibition of specific methanogenic activity for sludge from UASB and EGSB reactor are 2.35 and 2.75 g/L, respectively. Hydrogen utilizing methanogens suffers less inhibition from ammonia mtrogen than that of acetate utilizing methanogens. Hydrogen-producing acetogens that utilize propionate and butyrate as substrates suffer serious inhibition from ammonia nitrogen. The toxicity of ammonia nitrogen to anaerobic granular sludge enhances when pH value and temperature increase. Anaerobic granular sludge can bear higher concentrations of ammonia nitrogen after being acclimated by ammonia nitrogen for 7 d.展开更多
A lab-scale continuously-stirred tank reactor （CSTR）, used for anaerobic co-digestion of fruit and vegetable waste （FVW） and food waste （FW） at different mixture ratios, was operated for 178 days at the organic ...A lab-scale continuously-stirred tank reactor （CSTR）, used for anaerobic co-digestion of fruit and vegetable waste （FVW） and food waste （FW） at different mixture ratios, was operated for 178 days at the organic loading rate of 3 kg VS （volatile solids）/（m3.day）. The dynamics of the Archaeal community and the correlations between environmental variables and methanogenic community structure were analyzed by polymerase chain reactions - denaturing gradient gel electrophoresis （PCR-DGGE） and redundancy analysis （RDA）, respectively. PCR-DGGE results demonstrated that the mixture ratio of FVW to FW altered the community composition of Archaea. As the FVW]FW ratio increased, Methanoculleus, Methanosaeta and Methanosarcina became the predominant methanogens in the community. Redundancy analysis results indicated that the shift of the methanogenic community was significantly correlated with the composition of acidogenic products and methane production yield. Different mixture ratios of substrates led to different compositions of intermediate metabolites, which may affect the methanogenic community. These results suggested that the analysis of microbial communities could be used to diagnose anaerobic processes.展开更多
The characteristics of methane emission were compared among six types of upland and paddy soils developed from different parent materials with distinct physics and chemical properties after planting rice. The fluxes o...The characteristics of methane emission were compared among six types of upland and paddy soils developed from different parent materials with distinct physics and chemical properties after planting rice. The fluxes of methane emission in submerged soils from the upland were obviously lower than those from the paddy rice field. The flux of methane emission in the paddy soil developed from fluvo-aquic soil was the largest among all the types of soils. Planting of rice was helpful to emission of methane in soils. The amounts of various groups of methanogenic flora were conformed with the deferences among the fluxes of methane emission in various types of soils. Methane formation was observed in each type Of air-dried soils stored for a long time after addition of water and incubation at 35℃.展开更多
Methanogenic archaea reside primarily in the rumen and the lower segments of the intestines of ruminants, where they utilize the reducing equivalents derived from rumen fermentation to reduce carbon dioxide, formic ac...Methanogenic archaea reside primarily in the rumen and the lower segments of the intestines of ruminants, where they utilize the reducing equivalents derived from rumen fermentation to reduce carbon dioxide, formic acid, or methylamines to methane（CH_4）. Research on methanogens in the rumen has attracted great interest in the last decade because CH_4 emission from ruminants contributes to global greenhouse gas emission and represents a loss of feed energy. Some DNA-based phylogenetic studies have depicted a diverse and dynamic community of methanogens in the rumen. In the past decade, researchers have focused on elucidating the underpinning that determines and affects the diversity, composition, structure, and dynamics of methanogen community of the rumen. Concurrently, many researchers have attempted to develop and evaluate interventions to mitigate enteric CH_4 emission. Although much work has been done using plant secondary metabolites, other approaches such as using nitrate and 3-nitrooxy propanol have also yielded promising results. Most of these antimethanogenic compounds or substances often show inconsistent results among studies and also lead to adverse effects on feed intake and digestion and other aspects of rumen fermentation when fed at doses high enough to achieve effective mitigation. This review provides a brief overview of the rumen methanogens and then an appraisal of most of the antimethanogenic compounds and substances that have been evaluated both in vitro and in vivo. Knowledge gaps and future research needs are also discussed with a focus on methanogens and methane mitigation.展开更多
The community structure of methanogenic archaea is relatively stable,i.e.,it is sustained at a high abundance with minimal changes in composition,in paddy field soils irrespective of submergence and drainage.In contra...The community structure of methanogenic archaea is relatively stable,i.e.,it is sustained at a high abundance with minimal changes in composition,in paddy field soils irrespective of submergence and drainage.In contrast,the abundance in non-methanogenic oxic soils is much lower than that in paddy field soils.This study aimed to describe methanogenic archaeal community development following the long-term submergence of non-methanogenic oxic upland field soils in pot and field experiments.In the pot experiment,a soil sample obtained from an upland field was incubated under submerged conditions for 275 d.Soil samples periodically collected were subjected to culture-dependent most probable number(MPN)enumeration,polymerase chain reaction-denaturing gradient gel electrophoresis(PCR-DGGE)analysis of archaeal 16 S r RNA gene,and quantitative PCR analysis of the methyl-coenzyme M reductase alpha subunit gene(mcr A)of methanogenic archaea.The abundance of methanogenic archaea increased from 102 to 103 cells g-1 dry soil and 104 to 107 copies of mcr A gene g-1 dry soil after submergence.Although no methanogenic archaeon was detected prior to incubation by the DGGE analysis,members from Methanocellales,Methanosarcinaceae,and Methanosaetaceae proliferated in the soils,and the community structure was relatively stable once established.In the field experiment,the number of viable methanogenic archaea in a rice paddy field converted from meadow(reclaimed paddy field)was monitored by MPN enumeration over five annual cycles of field operations.Viability was also determined simultaneously in a paddy field where the plow layer soil from a farmer’s paddy field was dressed onto the meadow(dressed paddy field)and an upland crop field converted from the meadow(reclaimed upland field).The number of viable methanogenic archaea in the reclaimed paddy field was below the detection limit before the first cultivation of rice and in the reclaimed upland field.Then,the number gradually increased over five years and finally reached 103–104 cells g-1 dry soil,which was comparable to that in the dressed paddy field.These findings showed that the low abundance of autochthonous methanogenic archaea in the non-methanogenic oxic upland field soils steadily proliferated,and the community structure was developed following repeated and long-term submergence.These results suggest that habitats suitable for methanogenic archaea were established in soil following repeated and long-term submergence.展开更多
The maximum specific methanogenic activity （SMA） of a sludge originating from a brewery wastewater treatment plant on the degradation of glucose was investigated at various levels of sulfate on a specific loading ba...The maximum specific methanogenic activity （SMA） of a sludge originating from a brewery wastewater treatment plant on the degradation of glucose was investigated at various levels of sulfate on a specific loading basis. Batch experiments were conducted in serum bottles at pH 7 and 35℃. A comparison of the values indicates that the SMA of this mixed culture was increased and reached its highest level of 0.128 g CH4 gas COD/（g VSS.d） when biomass was in contact with sulfate at a ratio of 1：0.114 by weight.展开更多
Rapid formation of autotrophic partial denitrification(APD)granules is of practical interest to start up an expanded granular sludge bed reactor for wastewater treatment.This study demonstrates that methanogenic granu...Rapid formation of autotrophic partial denitrification(APD)granules is of practical interest to start up an expanded granular sludge bed reactor for wastewater treatment.This study demonstrates that methanogenic granules can be easily acclimated into autotrophic partial denitrification granules in one day,with the ability to remove 82%of 2.7 kg-S/(m^3·d)sulfide into S^0 and to convert 97%of 0.9 kg-N/(m^3·d)nitrate into nitrite,which can provide a promising feedstock for anaerobic ammonia oxidation process.Arcobacter sp.is essential for S^0 accumulation.Under high loadings,the abundance of Arcobacter sp.decreased,while on the contrary the abundance of unclassified_p_Firmicutes increased,leading to the deterioration of autotrophic partial denitrification performance.The granules performance could be recovered by adopting the strategies of properly reducing the influent loadings.展开更多
Erhualian and Landrace breeds are typical genetically obese and lean pigs, respectively. To compare the fecal methanogenic Archaeal community between these two pig breeds, fecal samples from different growth phase pig...Erhualian and Landrace breeds are typical genetically obese and lean pigs, respectively. To compare the fecal methanogenic Archaeal community between these two pig breeds, fecal samples from different growth phase pigs were collected and used for PCR-denaturing gradient gel electrophoresis （DGGE） with two primer pairs （344fGC/519r and 519f/915rGC） and real-time PCR analysis. Results showed that a better separation and higher quality of bands pattern were obtained in DGGE proifles using primers 344fGC/519r as compared with primers 519f/915rGC. Sequencing of DGGE bands showed that the predominant methanogens in the feces of Erhualian and Landrace pigs belonged to Methanobrevibacter spp. and Methanosphaera spp. Real-time PCR analysis revealed that there was no signiifcant difference in the numbers of fecal total methanogens between Erhualian and Landrace pigs;however, pig growth phase affected the numbers of 16S rRNA genes of total methanogens and Methanobrevibacter smithii. Dissociation curves of methyl coenzyme-M reductase subunit A （mcrA） gene fragments ampliifed with real-time PCR showed all samples possessed a single peak at 82＆#176;C, which might be associated with M. smithii. Samples from the same growth phase of each breed showed good replicative dissociation curves. The results suggest that the growth phase （including diet factor） other than genotype of pig may affect the fecal methanogenic Archaeal community of pigs.展开更多
Biogas reactors operating with protein-based biomass have a high methane potential and industrial value.Protein-rich materials,including gelatin processing and ossein factory waste,are suitable feedstocks for use in a...Biogas reactors operating with protein-based biomass have a high methane potential and industrial value.Protein-rich materials,including gelatin processing and ossein factory waste,are suitable feedstocks for use in ammonia-tolerant biogas digesters.However,the anaerobic digestion of these materials is limited by the accumulation of ammonia,hydrogen sulfide,and lactic acid.A stable biogas starter is required for efficient biogas production from protein-based mass and process per-formance.Hence,various ammonia-tolerant biogas inocula,immobilization carriers used,culture formulations,and stater stability are comprehensively summarized in this review.We also discuss engineered methanogens and mutants to improve methane productivity.The genera Methanoculleus and Methanosarcina are the dominant ammonia-tolerant methanogens studied in different biogas plants;however,their ammonia-tolerant molecular mechanisms remain unclear.Recent advances in omics technologies,systems,and synthetic biology of methanogens have been reviewed and discussed for the design and development of methanogenic inocula.We described the genome-centric characteristics of methanogenic consortia to improve the process efficiency under the desired environmental conditions.We also focus on the perspective of methano-genic culture development for the co-production of acetone–butanol–ethanol and methane as well as odor control strategies.A novel metabolic scaffold“Protein Catabolism-Directed Methanogenesis”was discovered from a methanogenic culture using a systems biology approach.This review offers new insights into the feasibility of ammonia-tolerant biogas starters and engineering synthetic pathways for recycling gelatin processing waste into biofuels in the energy sector.展开更多
The synthesis of 2-butenal,which is a vital raw material for the production of sorbic acid as a food preservative,generates some toxic by-products,so it is urgent to seek better detoxification strategies for the treat...The synthesis of 2-butenal,which is a vital raw material for the production of sorbic acid as a food preservative,generates some toxic by-products,so it is urgent to seek better detoxification strategies for the treatment of 2-butenal manufacture wastewater.In this study,batch experiments were carried out to investigate the inhibition effect of wastewater on the methanogenic activity.To understand the wastewater toxicity to anaerobic granular sludge,variations of the specific methanogenic activity(SMA)and extracellular polymeric substance(EPS)constituents at various wastewater CODs were investigated.Ultraviolet-visible(UV-vis)spectra and Fourier transform infrared(FT-IR)spectra were employed to analyze the structure of the EPS.The results showed that the inhibitory ratio of 2-butenal manufacture wastewater was less than 8.4%on the anaerobic granular sludge when the CODs were less than 959 mg/L.However,the inhibitory ratio increased from 36.4%to 93.6% when CODs increased from 2396 mg/L to 9585 mg/L,with the SMA decreasing from 39.1 mL CH4/(gVSS·d)to 3.2 mL CH4/(gVSS·d).The diversity of the microbial community under various CODs was researched by Illumina 16S rRNA Miseq sequencing and the results demonstrated that Proteiniphilum、Petrimonas and Syntrophobacter were the dominant bacteria genera in all sample.Regarding archaea,Methanobacterium was the most dominated archaea genera,followed by the Methanosaeta group in all samples.Moreover,the bacterial communities had changed obviously with increasing CODs,which indicated high CODs played a negative impact on the richness and diversity of bacterial community in the sludge samples.展开更多
In this study,the two-stage upflow anaerobic sludge blanket(UASB)system and batch experiments were employed to evaluate the performance of anaerobic digestion for the treatment of high concentration methanol wastewate...In this study,the two-stage upflow anaerobic sludge blanket(UASB)system and batch experiments were employed to evaluate the performance of anaerobic digestion for the treatment of high concentration methanol wastewater.The acid resistance of granular sludge and methanogenic bacteria and their metabolizing activity were investigated.The results show that the pH of the first UASB changed from 4.9 to 5.8 and 5.5 to 6.2 for the second reactor.Apparently,these were not the advisable pH levels that common metha-nogenic bacteria could accept.The methanogenic bacteria of the system,viz.Methanosarcina barkeri,had some acid resis-tance and could still degrade methanol at pH 5.0.If the meth-anogenic bacteria were trained further,their acid resistance would be improved somewhat.Granular sludge of the system could protect the methanogenic bacteria within its body against the impact of the acidic environment and make them degrade methanol at pH 4.5.The performance of granular sludge was attributed to its structure,bacteria species,and the distribution of bacterium inside the granule.展开更多
Polycyclic aromatic hydrocarbons(PAHs)often occur in oil-contaminated soil,coke wastewater and domestic sludge;however,associated PAH degraders in these environments are not clear.Here we evaluated phenanthrene degrad...Polycyclic aromatic hydrocarbons(PAHs)often occur in oil-contaminated soil,coke wastewater and domestic sludge;however,associated PAH degraders in these environments are not clear.Here we evaluated phenanthrene degradation potential in the mixed samples of above environments,and obtained a methanogenic community with different microbial profile compared to those from sediments.Phenanthrene was efficiently degraded(1.26 mg/L/d)and nonstoichiometric amount of methane was produced simultaneously.16S rRNA gene sequencing demonstrated that bacterial populations were mainly associated with Comamonadaceae Nocardiaceae and Thermodesulfobiaceae,and that methanogenic archaea groups were dominated by Methanobacterium and Methanothermobacter.Substances such as hexane,hexadecane,benzene and glucose showed the most positive effects on phenanthrene degradation.Substrate utilization tests indicated that this culture could not utilize other PAHs.These analyses could offer us some suggestions on the putative phenanthrene-degrading microbes in such environments,and might help us develop strategies for the removal of PAHs from contaminated soil and sludge.展开更多
Microplastics and nanoplastics are emerging pollutants that substantially influence biological element cycling in natural ecosystems.Plastics are also prevalent in sewage,and they accumulate in waste-activated sludge(...Microplastics and nanoplastics are emerging pollutants that substantially influence biological element cycling in natural ecosystems.Plastics are also prevalent in sewage,and they accumulate in waste-activated sludge(WAS).However,the impacts of plastics on the methanogenic digestion of WAS and the underpinning microbiome remain underexplored,particularly during long-term operation.In this study,we found that short-term exposure to individual microplastics and nanoplastics(polyethylene,polyvinyl chloride,polystyrene,and polylactic acid)at a low concentration(10 particles/g sludge)slightly enhanced methanogenesis by 2.1%−9.0%,whereas higher levels(30−200 particles/g sludge)suppressed methanogenesis by 15.2%−30.1%.Notably,the coexistence of multiple plastics,particularly at low concentrations,showed synergistic suppression of methanogenesis.Unexpectedly,methanogenesis activity completely recovered after long-term exposure to plastics,despite obvious suppression of methanogenesis by initial plastic exposure.The inhibition of methanogenesis by plastics could be attributed to the stimulated generation of reactive oxygen species.The stress induced by plastics dramatically decreased the relative abundance of methanogens but showed marginal influence on putative hydrolytic and fermentation populations.Nonetheless,the digestion sludge microbiome exhibited resilience and functional redundancy,contributing to the recovery of methanogenesis during the long-term operation of digesters.Plastics also increased the complexity,modularity,and negative interaction ratios of digestion sludge microbiome networks,but their influence on community assembly varied.Interestingly,a unique plastisphere was observed,the networks and assembly of which were distinct from the sludge microbiome.Collectively,the comprehensive evaluation of the influence of microplastics and nanoplastics on methanogenic digestion,together with the novel ecological insights,contribute to better understanding and manipulating this engineered ecosystem in the face of increasing plastic pollution.展开更多
Global efforts to avert climate change cannot succeed without tackling the emission of methane from soil and other ecosystems.Methane is a greenhouse gas that retains heat in the atmosphere and causes global warming.I...Global efforts to avert climate change cannot succeed without tackling the emission of methane from soil and other ecosystems.Methane is a greenhouse gas that retains heat in the atmosphere and causes global warming.Its production is the last step of organic matter decomposition,and it is produced by methanogenic archaea bearing the functional gene mcrA(encoding methyl-coenzyme M reductase).Methane production involves the reduction of acetate or carbon dioxide in a microaerophilic or anaerobic environment under the catalytic actions of methyl-coenzyme M to generate methane.On the other hand,methane-oxidizing bacteria,also known as methanotrophs,through the catalytic action of particulate methane monooxygenase(pMMO),oxidize methane and reduce its emission to the atmosphere.In essence,both production and consumption of methane happen within the soil.Methanotrophs and methanogens inhabit the same soil environment.In fact,a shift in the balance between methanogen and methanotroph activities and abundances could influence soil methane emission and global warming.In this review,we highlight recent advances in drivers of methane flux,pmoA(encoding pMMO)and mcrA gene abundances,methane emission and control,relationships between microbial functional gene abundances and soil functions,and methods for studying the pmoA and mcrA gene abundances in soil.We also highlight gaps that need to be filled and the impact of the mcrA/pmoA gene abundance ratio in driving the methane emission rate in soil.We also discuss the various abiotic factors that control pmoA and mcrA gene abundances.展开更多
Because of their diversity and abundance in a wide range of environments, particularly in cold regions, cold-adaptive archaea are expected to play a pivotal role in material recycling in cold environments. Methanogeni...Because of their diversity and abundance in a wide range of environments, particularly in cold regions, cold-adaptive archaea are expected to play a pivotal role in material recycling in cold environments. Methanogenic archaea are ubiquitous on earth and produce a large amount of methane （CH4） as their main carbon metabolite. Methanogens are the most laboratory amenda- ble archaea. The few psychrophilic archaea that have been cultured to date are mainly affiliated with methanogens, thus make them a good model for investigating mechanisms of archaeal cold adaptation. Studies of psychrotolerant methanogens have been ongoing since the 1990s. Using Methanocoecoides burtonii, a methanogen isolated from Ace Lake in Antarctica, exten- sive studies on the genomic characteristics associated with cold adaptation have been carried out by the Cavicchioli laboratory. We recently analyzed the genome of another psychrophilic methanogen and identified the gene repertoire associated with cold adaptation. This review summarizes recent studies of psychroactive methanogens, particularly their diversity, the genomics and proteomics associated with their cold adaptation, and the cellular components and proteins likely involved in their cold protec- tion.展开更多
A laboratory scale up-flow anaerobic sludge bed （UASB） bioreactor ted with synthetic wastewater was operated with simultaneous methanogenesis and denitrification （SMD） granules for 235 days with a gradient decreas...A laboratory scale up-flow anaerobic sludge bed （UASB） bioreactor ted with synthetic wastewater was operated with simultaneous methanogenesis and denitrification （SMD） granules for 235 days with a gradient decrease of C/N. Molecular cloning, qRT-PCR and T-RFLP were applied to study tile methanogenic community structures in SMD granules and their changes in response to changing influent C/N. The results indicate that when C/N was 20：1, the methane production rate was tastest, and Methanosaetaceae and Methanobacteriaceae were the primary methanogens within tile Archaea. The richness and evenness of methanogenic bacteria was best with the highest T-RFLP diversity index of 1.627 in the six granular sludge samples. When C/N was reduced from 20：1 to 5：1, tbe methanogenic activity of SMD granules decreased gradually, and the relative quantities of methanogens decreased from 36.5% to 10.9%. The abundance of Methanosaetaceae in Archaea increased from 64.5% to 84.2%, while that of Methanobacteriaceae decreased from 18.6% to 11.8%, and the richness and evenness of methanogens decreased along with the T-RFLP diversity index to 1.155, suggesting that the community structure reflected the succession to an unstable condition represented by high nitrate concentrations.展开更多
基金supported by the National Natural Science Foundation of China(32370471,32070406)Basic and Applied Basic Research Founda-tion of Guangdong Province(2024A1515011110)the Project(No.RSP2025R7)of King Saud University,Saudi Arabia.
文摘Methanogenic endosymbionts are the only known intracellular archaeans and are especially common in anaerobic ciliated protists.Studies on the evolution of associations between anaerobic ciliates and their methanogenic endosymbionts offer an excellent opportunity to broaden our knowledge about symbiosis theory and adaptation of eukaryotes to anoxic environments.Here,the diversity of methanogenic endosymbionts was analyzed with the addition of nine anaerobic ciliate populations that were newly studied by various methods.Results showed that diverse anaerobic ciliates host methanogenic endosymbionts that are limited to a few genera in orders Methanomicrobiales,Methanobacteriales,and Methanosarcinales.For the first time,anaerobic ciliates of the classes Muranotrichea and Prostomatea were found to host methanogenic endosymbionts.Distinct origins of endosymbiosis were revealed for classes Armophorea and Plagiopylea.We posit that armophoreans and plagiopyleans might have harbored Methanoregula(order Methanomicrobiales)and Methanocorpusculum(order Metha-nomicrobiales),respectively,as methanogenic endosymbionts at the beginning of their evolution.Subsequently,independent endosymbiont replacement events occurred in methanogen-ciliate associations,probably due to ecological transitions,species radiation of ciliate hosts,and vertical transmission bottlenecks of endosymbionts.Our results shed light on the evolution of associations between anaerobic ciliates and methanogens,and identifies the necessary preconditions for illustrating mecha-nisms by which endosymbioses between these partners were established.
基金funded by Blue Ocean Barns.AB has a Ramón y Cajal research contract(RYC2019-027764-I)funded by the Spanish State Research Agency(AEI)。
文摘Background The red macroalgae Asparagopsis is an effective methanogenesis inhibitor due to the presence of halogenated methane(CH_(4))analogues,primarily bromoform(CHBr_(3)).This study aimed to investigate the degradation process of CHBr3 from A taxiformis in the rumen and whether this process is diet-dependent.An in vitro batch culture system was used according to a 2×2 factorial design,assessing two A taxiformis inclusion rates[0(CTL)and 2%DM diet(AT)]and two diets[high-concentrate(HC)and high-forage diet(HF)].Incubations lasted for 72 h and samples of headspace and fermentation liquid were taken at 0,0.5,1,3,6,8,12,16,24,48 and 72 h to assess the pattern of degradation of CHBr_(3) into dibromomethane(CH_(2)Br_(2))and fermentation parameters.Additionally,an in vitro experiment with pure cultures of seven methanogens strains(Methanobrevibacter smithii,Methanobrevibacter ruminantium,Methanosphaera stadtmanae,Methanosarcina barkeri,Methanobrevibacter millerae,Methanorhermobacter wolfei and Methanobacterium mobile)was conducted to test the effects of increasing concentrations of CHBr3(0.4,2,10and 50μmol/L).Results The addition of AT significantly decreased CH_(4) production(P=0.002)and the acetate:propionate ratio(P=0.003)during a 72-h incubation.The concentrations of CHBr_(3) showed a rapid decrease with nearly 90%degraded within the first 3 h of incubation.On the contrary,CH_(2)Br_(2) concentration quickly increased during the first 6 h and then gradually decreased towards the end of the incubation.Neither CHBr_(3) degradation nor CH_(2)Br_(2) synthesis were affected by the type of diet used as substrate,suggesting that the fermentation rate is not a driving factor involved in CHBr_(3)degradation.The in vitro culture of methanogens showed a dose-response effect of CHBr3 by inhibiting the growth of M.smithii,M.ruminantium,M.stadtmanae,M.barkeri,M.millerae,M.wolfei,and M.mobile.Conclusions The present work demonstrated that CHBr_(3) from A.taxiformis is quickly degraded to CH_(2)Br_(2)in the rumen and that the fermentation rate promoted by different diets is not a driving factor involved in CHBr_(3)degradation.
基金supported by the Key Program for International S&T Cooperation Projects of China(2016YFE0109000)the National Key R&D Program of China(2017YFF0211702)+1 种基金the National Natural Science Foundation of China(41475126 and 31802085)the Young Scientist Lifting Project,China(2017–2019)
文摘The objective of the present study was to examine the effect of different weaning methods on the ruminal methanogenic archaea composition and diversity in Holstein calves.Thirty-six newborn Holstein bull calves were assigned to 1 of 3 treatments:(1)conventional weaning(d 56)and fed a high proportion of solid feed(CWS);(2)conventional weaning(d 56)and fed a high proportion of liquid feed(CWL);(3)early weaning(d 42)and fed with a high proportion of solid feed(EWS).High-throughput sequencing of the methyl coenzyme M reductase(mcr A)gene,which encodes theα-subunit of methyl coenzyme M reductase-the enzyme that catalyzes the final step in methanogenesis was used to determine the composition and diversity of rumen methanogens.No significant difference(P>0.05)was observed for operational taxonomic units(OTUs)or richness indices,but diversity indices increased(P<0.05)for calves fed high dietary solids.Predominant families across the three treatments were Methanobacteriaceae,Thermoplasmataceae and Methanomassiliicoccaceae.Calves in the EWS treatment had a higher(P<0.05)relative abundance of Methanobrevibacter sp.strain AbM4 and Methanosphaera stadtmanae,while calves in the CWL treatment had a higher(P<0.05)abundance of Methanosphaera sp.strain SM9.A positive(P<0.05)relationship was identified between butyrate and Methanobrevibacter sp.strain AbM4.In conclusion,the composition and diversity of methanogens in the rumen of Holstein calves varied under the different weaning methods.This study identified a positive relationship between butyrate and Methanobrevibacter sp.strain AbM4,potentially reflecting correlations between ruminal fermentation variables and methanogenesis function.These in-depth analyses provide further understanding of weaning methods for intensified production systems.
基金supported by the Program for Changjiang Scholars and Innovative Research Team in University (No.IRT0853)
文摘Coke plant effluents with high contents of organic compounds are mainly treated by biological aerobic fermentation after physical pre-treatment. In this study, a brown coal condensate wastewater from a low temperature coking process was fermented under methanogenic conditions in discontinuous experiments. By this fermentation, acetate, propionate, and the main polyphenolic compounds （catechol, resorcinol and hydroquinone） were degraded to a level below the detection limit. The COD was reduced by 72% with a residual concentration of 2.1 g/L. This anaerobic fermented wastewater had a residual BOD5 of 0.66 g/L and 2.2 L CH4 were formed per litre of wastewater. An abiotic pre-treatment for this wastewater with air had a negative effect on the COD reduction and decrease of colour on the methanogenic fermentation due to the autoxidation of polyphenolic compounds to humic-like compounds. This study showed that methanogenic fermentations in the treatment sequence of brown coal coking wastewaters could reduce energy consumption for aeration in further treatment processes and had the potential for a better effluent quality due to a less formation of recalcitrant humic-like compounds.
文摘A series of batch experiments were conducted in 125 mL serum bottles to assess the toxicity of different concentrations of ammonia nitrogen to the specific methanogenic activity of anaerobic granular sludge from upflow anaerobic sludge bed（UASB） and expanded granular sludge bed（EGSB） reactors. The effects of pH value and temperature on toxicity of ammonia nitrogen to anaerobes were investigated. The results show that the specific methanogenic activity of anaerobic granular sludge suffers inhibition from ammonia nitrogen, the concentrations of ammonia nitrogen that produce 50 % inhibition of specific methanogenic activity for sludge from UASB and EGSB reactor are 2.35 and 2.75 g/L, respectively. Hydrogen utilizing methanogens suffers less inhibition from ammonia mtrogen than that of acetate utilizing methanogens. Hydrogen-producing acetogens that utilize propionate and butyrate as substrates suffer serious inhibition from ammonia nitrogen. The toxicity of ammonia nitrogen to anaerobic granular sludge enhances when pH value and temperature increase. Anaerobic granular sludge can bear higher concentrations of ammonia nitrogen after being acclimated by ammonia nitrogen for 7 d.
基金supported by the Ministry of Science and Technology of China(No.2008BADC4B16,2008BADC4B18,2008AA062401)
文摘A lab-scale continuously-stirred tank reactor （CSTR）, used for anaerobic co-digestion of fruit and vegetable waste （FVW） and food waste （FW） at different mixture ratios, was operated for 178 days at the organic loading rate of 3 kg VS （volatile solids）/（m3.day）. The dynamics of the Archaeal community and the correlations between environmental variables and methanogenic community structure were analyzed by polymerase chain reactions - denaturing gradient gel electrophoresis （PCR-DGGE） and redundancy analysis （RDA）, respectively. PCR-DGGE results demonstrated that the mixture ratio of FVW to FW altered the community composition of Archaea. As the FVW]FW ratio increased, Methanoculleus, Methanosaeta and Methanosarcina became the predominant methanogens in the community. Redundancy analysis results indicated that the shift of the methanogenic community was significantly correlated with the composition of acidogenic products and methane production yield. Different mixture ratios of substrates led to different compositions of intermediate metabolites, which may affect the methanogenic community. These results suggested that the analysis of microbial communities could be used to diagnose anaerobic processes.
文摘The characteristics of methane emission were compared among six types of upland and paddy soils developed from different parent materials with distinct physics and chemical properties after planting rice. The fluxes of methane emission in submerged soils from the upland were obviously lower than those from the paddy rice field. The flux of methane emission in the paddy soil developed from fluvo-aquic soil was the largest among all the types of soils. Planting of rice was helpful to emission of methane in soils. The amounts of various groups of methanogenic flora were conformed with the deferences among the fluxes of methane emission in various types of soils. Methane formation was observed in each type Of air-dried soils stored for a long time after addition of water and incubation at 35℃.
基金supported by funding(award number:2012-67015-19437) from the Agriculture and Food Research Initiative(AFRI) of National Institute of Food and Agriculture(NIFA),US Department of Agriculture
文摘Methanogenic archaea reside primarily in the rumen and the lower segments of the intestines of ruminants, where they utilize the reducing equivalents derived from rumen fermentation to reduce carbon dioxide, formic acid, or methylamines to methane（CH_4）. Research on methanogens in the rumen has attracted great interest in the last decade because CH_4 emission from ruminants contributes to global greenhouse gas emission and represents a loss of feed energy. Some DNA-based phylogenetic studies have depicted a diverse and dynamic community of methanogens in the rumen. In the past decade, researchers have focused on elucidating the underpinning that determines and affects the diversity, composition, structure, and dynamics of methanogen community of the rumen. Concurrently, many researchers have attempted to develop and evaluate interventions to mitigate enteric CH_4 emission. Although much work has been done using plant secondary metabolites, other approaches such as using nitrate and 3-nitrooxy propanol have also yielded promising results. Most of these antimethanogenic compounds or substances often show inconsistent results among studies and also lead to adverse effects on feed intake and digestion and other aspects of rumen fermentation when fed at doses high enough to achieve effective mitigation. This review provides a brief overview of the rumen methanogens and then an appraisal of most of the antimethanogenic compounds and substances that have been evaluated both in vitro and in vivo. Knowledge gaps and future research needs are also discussed with a focus on methanogens and methane mitigation.
基金a Grant-in-Aid for Japan Society for the Promotion of Science (JSPS) Fellows (No. 19 6611)JSPS KAKENHI (No. 24780318).
文摘The community structure of methanogenic archaea is relatively stable,i.e.,it is sustained at a high abundance with minimal changes in composition,in paddy field soils irrespective of submergence and drainage.In contrast,the abundance in non-methanogenic oxic soils is much lower than that in paddy field soils.This study aimed to describe methanogenic archaeal community development following the long-term submergence of non-methanogenic oxic upland field soils in pot and field experiments.In the pot experiment,a soil sample obtained from an upland field was incubated under submerged conditions for 275 d.Soil samples periodically collected were subjected to culture-dependent most probable number(MPN)enumeration,polymerase chain reaction-denaturing gradient gel electrophoresis(PCR-DGGE)analysis of archaeal 16 S r RNA gene,and quantitative PCR analysis of the methyl-coenzyme M reductase alpha subunit gene(mcr A)of methanogenic archaea.The abundance of methanogenic archaea increased from 102 to 103 cells g-1 dry soil and 104 to 107 copies of mcr A gene g-1 dry soil after submergence.Although no methanogenic archaeon was detected prior to incubation by the DGGE analysis,members from Methanocellales,Methanosarcinaceae,and Methanosaetaceae proliferated in the soils,and the community structure was relatively stable once established.In the field experiment,the number of viable methanogenic archaea in a rice paddy field converted from meadow(reclaimed paddy field)was monitored by MPN enumeration over five annual cycles of field operations.Viability was also determined simultaneously in a paddy field where the plow layer soil from a farmer’s paddy field was dressed onto the meadow(dressed paddy field)and an upland crop field converted from the meadow(reclaimed upland field).The number of viable methanogenic archaea in the reclaimed paddy field was below the detection limit before the first cultivation of rice and in the reclaimed upland field.Then,the number gradually increased over five years and finally reached 103–104 cells g-1 dry soil,which was comparable to that in the dressed paddy field.These findings showed that the low abundance of autochthonous methanogenic archaea in the non-methanogenic oxic upland field soils steadily proliferated,and the community structure was developed following repeated and long-term submergence.These results suggest that habitats suitable for methanogenic archaea were established in soil following repeated and long-term submergence.
基金Project supported by the National Research Center of Environmental and Hazardous Waste Management(NRC-EHWM), Chulalongko1 University,Thailand.
文摘The maximum specific methanogenic activity （SMA） of a sludge originating from a brewery wastewater treatment plant on the degradation of glucose was investigated at various levels of sulfate on a specific loading basis. Batch experiments were conducted in serum bottles at pH 7 and 35℃. A comparison of the values indicates that the SMA of this mixed culture was increased and reached its highest level of 0.128 g CH4 gas COD/（g VSS.d） when biomass was in contact with sulfate at a ratio of 1：0.114 by weight.
基金supported by the National Natural Science Foundation of China (21307160)the Natural Science Foundation of Shandong Province, China (ZR20192019MEE038)+3 种基金the Fundamental Research Funds for the Central Universities (19CX02038A)the Open Project of Key Laboratory of Environmental Biotechnology, CAS (Grant No. kf2018003)the Open Project Program of State Key Laboratory of Petroleum Pollution Control (Grant No. PPC2018006)the CNPC Research Institute of Safety and Environmental Technology
文摘Rapid formation of autotrophic partial denitrification(APD)granules is of practical interest to start up an expanded granular sludge bed reactor for wastewater treatment.This study demonstrates that methanogenic granules can be easily acclimated into autotrophic partial denitrification granules in one day,with the ability to remove 82%of 2.7 kg-S/(m^3·d)sulfide into S^0 and to convert 97%of 0.9 kg-N/(m^3·d)nitrate into nitrite,which can provide a promising feedstock for anaerobic ammonia oxidation process.Arcobacter sp.is essential for S^0 accumulation.Under high loadings,the abundance of Arcobacter sp.decreased,while on the contrary the abundance of unclassified_p_Firmicutes increased,leading to the deterioration of autotrophic partial denitrification performance.The granules performance could be recovered by adopting the strategies of properly reducing the influent loadings.
基金funding from the National Basic Research Program of China (2012CB124705,2013CB127603)the European Community’s Seventh Framework Programme (FP7/2007-2013) under the grant agreement n° 227549+1 种基金the Royal Dutch Academy of Sciences (KNAW) through Project 09CDP006the Fundamental Research Funds for the Central Universities,China (KYZ201153)
文摘Erhualian and Landrace breeds are typical genetically obese and lean pigs, respectively. To compare the fecal methanogenic Archaeal community between these two pig breeds, fecal samples from different growth phase pigs were collected and used for PCR-denaturing gradient gel electrophoresis （DGGE） with two primer pairs （344fGC/519r and 519f/915rGC） and real-time PCR analysis. Results showed that a better separation and higher quality of bands pattern were obtained in DGGE proifles using primers 344fGC/519r as compared with primers 519f/915rGC. Sequencing of DGGE bands showed that the predominant methanogens in the feces of Erhualian and Landrace pigs belonged to Methanobrevibacter spp. and Methanosphaera spp. Real-time PCR analysis revealed that there was no signiifcant difference in the numbers of fecal total methanogens between Erhualian and Landrace pigs;however, pig growth phase affected the numbers of 16S rRNA genes of total methanogens and Methanobrevibacter smithii. Dissociation curves of methyl coenzyme-M reductase subunit A （mcrA） gene fragments ampliifed with real-time PCR showed all samples possessed a single peak at 82＆#176;C, which might be associated with M. smithii. Samples from the same growth phase of each breed showed good replicative dissociation curves. The results suggest that the growth phase （including diet factor） other than genotype of pig may affect the fecal methanogenic Archaeal community of pigs.
文摘Biogas reactors operating with protein-based biomass have a high methane potential and industrial value.Protein-rich materials,including gelatin processing and ossein factory waste,are suitable feedstocks for use in ammonia-tolerant biogas digesters.However,the anaerobic digestion of these materials is limited by the accumulation of ammonia,hydrogen sulfide,and lactic acid.A stable biogas starter is required for efficient biogas production from protein-based mass and process per-formance.Hence,various ammonia-tolerant biogas inocula,immobilization carriers used,culture formulations,and stater stability are comprehensively summarized in this review.We also discuss engineered methanogens and mutants to improve methane productivity.The genera Methanoculleus and Methanosarcina are the dominant ammonia-tolerant methanogens studied in different biogas plants;however,their ammonia-tolerant molecular mechanisms remain unclear.Recent advances in omics technologies,systems,and synthetic biology of methanogens have been reviewed and discussed for the design and development of methanogenic inocula.We described the genome-centric characteristics of methanogenic consortia to improve the process efficiency under the desired environmental conditions.We also focus on the perspective of methano-genic culture development for the co-production of acetone–butanol–ethanol and methane as well as odor control strategies.A novel metabolic scaffold“Protein Catabolism-Directed Methanogenesis”was discovered from a methanogenic culture using a systems biology approach.This review offers new insights into the feasibility of ammonia-tolerant biogas starters and engineering synthetic pathways for recycling gelatin processing waste into biofuels in the energy sector.
基金supported by the China Special S&T Project on Treatment and Control of Water Pollution(2017ZX07402-002).
文摘The synthesis of 2-butenal,which is a vital raw material for the production of sorbic acid as a food preservative,generates some toxic by-products,so it is urgent to seek better detoxification strategies for the treatment of 2-butenal manufacture wastewater.In this study,batch experiments were carried out to investigate the inhibition effect of wastewater on the methanogenic activity.To understand the wastewater toxicity to anaerobic granular sludge,variations of the specific methanogenic activity(SMA)and extracellular polymeric substance(EPS)constituents at various wastewater CODs were investigated.Ultraviolet-visible(UV-vis)spectra and Fourier transform infrared(FT-IR)spectra were employed to analyze the structure of the EPS.The results showed that the inhibitory ratio of 2-butenal manufacture wastewater was less than 8.4%on the anaerobic granular sludge when the CODs were less than 959 mg/L.However,the inhibitory ratio increased from 36.4%to 93.6% when CODs increased from 2396 mg/L to 9585 mg/L,with the SMA decreasing from 39.1 mL CH4/(gVSS·d)to 3.2 mL CH4/(gVSS·d).The diversity of the microbial community under various CODs was researched by Illumina 16S rRNA Miseq sequencing and the results demonstrated that Proteiniphilum、Petrimonas and Syntrophobacter were the dominant bacteria genera in all sample.Regarding archaea,Methanobacterium was the most dominated archaea genera,followed by the Methanosaeta group in all samples.Moreover,the bacterial communities had changed obviously with increasing CODs,which indicated high CODs played a negative impact on the richness and diversity of bacterial community in the sludge samples.
基金This work was supported by the Ministry of Construction of China,and we would like to thank the good cooperation of Wujin Fine Chemical Factory during the methanol wastewater treatment.
文摘In this study,the two-stage upflow anaerobic sludge blanket(UASB)system and batch experiments were employed to evaluate the performance of anaerobic digestion for the treatment of high concentration methanol wastewater.The acid resistance of granular sludge and methanogenic bacteria and their metabolizing activity were investigated.The results show that the pH of the first UASB changed from 4.9 to 5.8 and 5.5 to 6.2 for the second reactor.Apparently,these were not the advisable pH levels that common metha-nogenic bacteria could accept.The methanogenic bacteria of the system,viz.Methanosarcina barkeri,had some acid resis-tance and could still degrade methanol at pH 5.0.If the meth-anogenic bacteria were trained further,their acid resistance would be improved somewhat.Granular sludge of the system could protect the methanogenic bacteria within its body against the impact of the acidic environment and make them degrade methanol at pH 4.5.The performance of granular sludge was attributed to its structure,bacteria species,and the distribution of bacterium inside the granule.
基金supported by the National Natural Science Foundation of China(Grant Nos.41573065 and 41773082)the Key Project of Natural Science Foundation of China(Grant No.21337001)the National Water Pollution Control and Treatment Science and Technology Major Project(Grant No.2017ZX07202002).
文摘Polycyclic aromatic hydrocarbons(PAHs)often occur in oil-contaminated soil,coke wastewater and domestic sludge;however,associated PAH degraders in these environments are not clear.Here we evaluated phenanthrene degradation potential in the mixed samples of above environments,and obtained a methanogenic community with different microbial profile compared to those from sediments.Phenanthrene was efficiently degraded(1.26 mg/L/d)and nonstoichiometric amount of methane was produced simultaneously.16S rRNA gene sequencing demonstrated that bacterial populations were mainly associated with Comamonadaceae Nocardiaceae and Thermodesulfobiaceae,and that methanogenic archaea groups were dominated by Methanobacterium and Methanothermobacter.Substances such as hexane,hexadecane,benzene and glucose showed the most positive effects on phenanthrene degradation.Substrate utilization tests indicated that this culture could not utilize other PAHs.These analyses could offer us some suggestions on the putative phenanthrene-degrading microbes in such environments,and might help us develop strategies for the removal of PAHs from contaminated soil and sludge.
基金supported by the Ministry of Education,Singapore,under Academic Research Fund Tier 2 under project No.:MOE-000033-01Tier 1 under Project No.:R-302-000-239-114。
文摘Microplastics and nanoplastics are emerging pollutants that substantially influence biological element cycling in natural ecosystems.Plastics are also prevalent in sewage,and they accumulate in waste-activated sludge(WAS).However,the impacts of plastics on the methanogenic digestion of WAS and the underpinning microbiome remain underexplored,particularly during long-term operation.In this study,we found that short-term exposure to individual microplastics and nanoplastics(polyethylene,polyvinyl chloride,polystyrene,and polylactic acid)at a low concentration(10 particles/g sludge)slightly enhanced methanogenesis by 2.1%−9.0%,whereas higher levels(30−200 particles/g sludge)suppressed methanogenesis by 15.2%−30.1%.Notably,the coexistence of multiple plastics,particularly at low concentrations,showed synergistic suppression of methanogenesis.Unexpectedly,methanogenesis activity completely recovered after long-term exposure to plastics,despite obvious suppression of methanogenesis by initial plastic exposure.The inhibition of methanogenesis by plastics could be attributed to the stimulated generation of reactive oxygen species.The stress induced by plastics dramatically decreased the relative abundance of methanogens but showed marginal influence on putative hydrolytic and fermentation populations.Nonetheless,the digestion sludge microbiome exhibited resilience and functional redundancy,contributing to the recovery of methanogenesis during the long-term operation of digesters.Plastics also increased the complexity,modularity,and negative interaction ratios of digestion sludge microbiome networks,but their influence on community assembly varied.Interestingly,a unique plastisphere was observed,the networks and assembly of which were distinct from the sludge microbiome.Collectively,the comprehensive evaluation of the influence of microplastics and nanoplastics on methanogenic digestion,together with the novel ecological insights,contribute to better understanding and manipulating this engineered ecosystem in the face of increasing plastic pollution.
文摘Global efforts to avert climate change cannot succeed without tackling the emission of methane from soil and other ecosystems.Methane is a greenhouse gas that retains heat in the atmosphere and causes global warming.Its production is the last step of organic matter decomposition,and it is produced by methanogenic archaea bearing the functional gene mcrA(encoding methyl-coenzyme M reductase).Methane production involves the reduction of acetate or carbon dioxide in a microaerophilic or anaerobic environment under the catalytic actions of methyl-coenzyme M to generate methane.On the other hand,methane-oxidizing bacteria,also known as methanotrophs,through the catalytic action of particulate methane monooxygenase(pMMO),oxidize methane and reduce its emission to the atmosphere.In essence,both production and consumption of methane happen within the soil.Methanotrophs and methanogens inhabit the same soil environment.In fact,a shift in the balance between methanogen and methanotroph activities and abundances could influence soil methane emission and global warming.In this review,we highlight recent advances in drivers of methane flux,pmoA(encoding pMMO)and mcrA gene abundances,methane emission and control,relationships between microbial functional gene abundances and soil functions,and methods for studying the pmoA and mcrA gene abundances in soil.We also highlight gaps that need to be filled and the impact of the mcrA/pmoA gene abundance ratio in driving the methane emission rate in soil.We also discuss the various abiotic factors that control pmoA and mcrA gene abundances.
文摘Because of their diversity and abundance in a wide range of environments, particularly in cold regions, cold-adaptive archaea are expected to play a pivotal role in material recycling in cold environments. Methanogenic archaea are ubiquitous on earth and produce a large amount of methane （CH4） as their main carbon metabolite. Methanogens are the most laboratory amenda- ble archaea. The few psychrophilic archaea that have been cultured to date are mainly affiliated with methanogens, thus make them a good model for investigating mechanisms of archaeal cold adaptation. Studies of psychrotolerant methanogens have been ongoing since the 1990s. Using Methanocoecoides burtonii, a methanogen isolated from Ace Lake in Antarctica, exten- sive studies on the genomic characteristics associated with cold adaptation have been carried out by the Cavicchioli laboratory. We recently analyzed the genome of another psychrophilic methanogen and identified the gene repertoire associated with cold adaptation. This review summarizes recent studies of psychroactive methanogens, particularly their diversity, the genomics and proteomics associated with their cold adaptation, and the cellular components and proteins likely involved in their cold protec- tion.
基金This work was supported by the National Natural Science Foundation of China （Grant Nos. 51678054 and 51378064）.
文摘A laboratory scale up-flow anaerobic sludge bed （UASB） bioreactor ted with synthetic wastewater was operated with simultaneous methanogenesis and denitrification （SMD） granules for 235 days with a gradient decrease of C/N. Molecular cloning, qRT-PCR and T-RFLP were applied to study tile methanogenic community structures in SMD granules and their changes in response to changing influent C/N. The results indicate that when C/N was 20：1, the methane production rate was tastest, and Methanosaetaceae and Methanobacteriaceae were the primary methanogens within tile Archaea. The richness and evenness of methanogenic bacteria was best with the highest T-RFLP diversity index of 1.627 in the six granular sludge samples. When C/N was reduced from 20：1 to 5：1, tbe methanogenic activity of SMD granules decreased gradually, and the relative quantities of methanogens decreased from 36.5% to 10.9%. The abundance of Methanosaetaceae in Archaea increased from 64.5% to 84.2%, while that of Methanobacteriaceae decreased from 18.6% to 11.8%, and the richness and evenness of methanogens decreased along with the T-RFLP diversity index to 1.155, suggesting that the community structure reflected the succession to an unstable condition represented by high nitrate concentrations.
