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龙眼SAP-PPD-KIX-TPL信号途径基因家族的全基因组鉴定与表达模式 被引量:1
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作者 韩婕 陈晓慧 +4 位作者 申序 李晓斐 林玉玲 吴鹏飞 赖钟雄 《应用与环境生物学报》 CAS CSCD 北大核心 2022年第2期440-450,共11页
STERILE APETALA(SAP)可调控PPD-KIX-TPL转录抑制复合体的稳定性,从而调节器官大小.基于龙眼基因组数据库,对龙眼SAP-PPD-KIX-TPL信号途径的基因家族进行全基因组鉴定,分析龙眼SAP、PEAPOD(PPD)和TOPLESS(TPL)家族成员的基本理化性质、... STERILE APETALA(SAP)可调控PPD-KIX-TPL转录抑制复合体的稳定性,从而调节器官大小.基于龙眼基因组数据库,对龙眼SAP-PPD-KIX-TPL信号途径的基因家族进行全基因组鉴定,分析龙眼SAP、PEAPOD(PPD)和TOPLESS(TPL)家族成员的基本理化性质、基因结构及蛋白结构域、启动子顺式作用元件、蛋白互作网络、构建系统进化树;分析龙眼体胚发生过程及不同组织部位中的基因表达水平,并采用qRT-PCR检测体胚发生早期及不同激素处理下的表达模式.结果表明,DlSAP包含1个成员,具有WD40结构域,只有1个内含子.DlPPD包含7个成员,具有tify和CCT_2结构域,含有2-7个内含子,最保守基序为motif1.DlTPL包含6个成员,具有LisH、CTLH和WD40结构域,含有23-29个内含子,除motif7外,motif1-10中的剩余基序均保守.龙眼kinase-inducible domain interacting(KIX)家族包含8个成员,保守结构域为KIX.顺式作用元件预测表明,DlSAP、DlPPD和DlTPL启动子均包含大量光响应、激素应答和非生物胁迫响应元件.蛋白互作网络预测显示,SAP和PPD之间的互作关系较强,与TPL相关联的蛋白较多.qRT-PCR结果表明,DlSAP、DlTIFY4B和DlTPR2-1在球形胚阶段表达量最高;DlSAP、DlTIFY10B-1和DlTPR2-1在不同激素处理中均出现多种表达模式.总之,龙眼SAP-PPD-KIX-TPL信号途径的基因可能参与响应多种激素和非生物胁迫应答,也可能参与胚胎发育,具有多种生物学功能.(图9表2参33) 展开更多
关键词 龙眼 SAP-PPD-kix-TPL信号途径 成员鉴定 生物信息学分析 实时荧光定量PCR
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Discovery of peptidomimetic inhibitors of CREB/CBP by targeting hydrophobic grooves on the surface of the CBP KIX domain
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作者 Bo Huang Emily Gregory-Lott +11 位作者 Bingbing X.Li Timothy HTran Sihao Li Menglin Xue Shaohui Wang Anabanadam Asokan Ning Shen Xingming Sun Chuanhai Cao Xiangshu Xiao Gary Daughdrill Jianfeng Cai 《Acta Pharmaceutica Sinica B》 2025年第12期6529-6545,共17页
Cyclic AMP-response element binding protein(CREB),a downstream transcription factor of multiple signaling pathways,is overexpressed in many different types of cancers.Thus,targeting CREB has great potential for the de... Cyclic AMP-response element binding protein(CREB),a downstream transcription factor of multiple signaling pathways,is overexpressed in many different types of cancers.Thus,targeting CREB has great potential for the development of antitumor agents.Peptidic foldamers have emerged as a powerful tool to disrupt disease-related protein-protein interactions(PPIs)with chemodiversity and high stability towards enzymatic degradation.Herein,we harnessed several hydrophobic groups of helical sulfonyl-γ-AApeptide foldamer targeting the hydrophobic grooves on the surface of the KIX domain of CREB binding protein(CBP),to disrupt CREB/CBP PPI.We showed that several stapled sulfonyl-γ-AApeptides could suppress CREB-mediated gene transcription and exhibit effective antiproliferative activity in cell-based assays and demonstrate its potency in inhibiting tumor growth in vivo.Our studies suggest that sulfonyl-γ-AApeptides as a class of helical foldamer could mimic the helical kinase-inducible activation domain of CREB(KID)to target the hydrophobic grooves on the surface of CBP KIX domain,and thereby inhibiting KIX-KID interaction,which provides a new strategy for the development of antitumor agent by targeting PPIs involving intrinsically disordered proteins(IDPs). 展开更多
关键词 CREB/CBP interaction kix domain IDPs PPI inhibitors Helical foldamers Peptidomimetics Sulfonyl-γ-AApeptides Stapled peptides
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