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Deciphering Haplotype-level Chromosome Conformation Alteration in Down Syndrome by Haplotype-resolved Multi-omics Analysis
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作者 Chengchao Wu Tianshu Zhou +16 位作者 Wenfu Ke Wei Xiong Zhihui Zhang Siheng Zhang Jinyue Wang Lulu Deng Keji Yan Man Wang Shenglong He Qi Gong Chao Ma Xiaping Chen Yan Li He Long Chong Guo Gang Cao Zhijun Zhang 《Genomics, Proteomics & Bioinformatics》 2025年第4期33-44,共12页
For chromosome abnormalities(CAs),such as Down syndrome(DS),the influence of genomic variations on chromosome conformation and gene transcription remains elusive.Based on the complete genomic sequences from the parent... For chromosome abnormalities(CAs),such as Down syndrome(DS),the influence of genomic variations on chromosome conformation and gene transcription remains elusive.Based on the complete genomic sequences from the parents of a DS trisomy patient,we systematically delineated an atlas of parental-specific,haplotype-resolved single nucleotide polymorphisms(SNPs),copy number variations(CNVs),threedimensional(3D)genome architecture,and RNA expression profiles in the diencephalon of the DS patient.The integrated haplotype-resolved multi-omics analysis demonstrated that one-dimensional(1D)genomic variations including SNPs and CNVs in the DS patient are highly correlated with the alterations in the 3D genome organization and the subsequent changes in gene transcription.This correlation remains valid at the haplotype level.Moreover,we revealed the 3D genome alteration-associated dysregulation of DS-related genes,which facilitates understanding the pathogenesis of CAs.Together,our study contributes to deciphering the coding from 1D genomic variations to 3D genome architecture and the subsequent gene transcription outcomes in both health and disease. 展开更多
关键词 Haplotype-resolved multi-omics analysis Chromosome conformation Down syndrome Parental allele-specific Transcriptional regulation
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Prediction of joint roughness coefficient via hybrid machine learning model combined with principal components analysis 被引量:1
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作者 Shijie Xie Hang Lin +2 位作者 Tianxing Ma Kang Peng Zhen Sun 《Journal of Rock Mechanics and Geotechnical Engineering》 2025年第4期2291-2306,共16页
Joint roughness coefficient(JRC)is the most commonly used parameter for quantifying surface roughness of rock discontinuities in practice.The system composed of multiple roughness statistical parameters to measure JRC... Joint roughness coefficient(JRC)is the most commonly used parameter for quantifying surface roughness of rock discontinuities in practice.The system composed of multiple roughness statistical parameters to measure JRC is a nonlinear system with a lot of overlapping information.In this paper,a dataset of eight roughness statistical parameters covering 112 digital joints is established.Then,the principal component analysis method is introduced to extract the significant information,which solves the information overlap problem of roughness characterization.Based on the two principal components of extracted features,the white shark optimizer algorithm was introduced to optimize the extreme gradient boosting model,and a new machine learning(ML)prediction model was established.The prediction accuracy of the new model and the other 17 models was measured using statistical metrics.The results show that the prediction result of the new model is more consistent with the real JRC value,with higher recognition accuracy and generalization ability. 展开更多
关键词 Rock discontinuities joint roughness coefficient(JRC) Roughness characterization Principal components analysis(PCA) Machine learning
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Comparative seismic performance analysis of steel braced frames with resilient slip-friction joint braces and buckling-restrained braces
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作者 Rajnil Lal Ashkan Hashemi +2 位作者 Nicholas Chan Setu Agarwal Pierre Quenneville 《Resilient Cities and Structures》 2025年第3期30-47,共18页
Self-centering systems are increasingly studied after devastating earthquakes in the 2010s that caused irreparable damage to buildings.Currently,there is conflicting evidence as to whether the re-centering(restoring)c... Self-centering systems are increasingly studied after devastating earthquakes in the 2010s that caused irreparable damage to buildings.Currently,there is conflicting evidence as to whether the re-centering(restoring)capabilities are gained at the expense of hysteretic damping,potentially leading to larger peak displacements and damage to non-structural elements.This study examines the earthquake response of self-centering and non-self-centering systems through analyses of 4-storey and 8-storey steel-braced frames.The Resilient Slip Friction Joint(RSFJ)dampers,combined with steel braces in series,represent the self-centering bracing system,whereas the Buckling Restrained Braces(BRBs)represent the non-self-centering bracing system.Results suggest that peak displacements,base shears,and floor accelerations were comparable between the two systems.A possible explanation is that the peak response occurs on the first major excursion;similar peaks result from similar backbone curves in the run-up to the peak.Conversely,the amount of hysteretic damping only begins to affect the post-peak behavior.For instance,the RSFJ system reintroduces seismic energy into the structure post-peak(rather than dissipating it like the BRB).Subsequently,it leads to larger vibration amplitudes about the central position,increasing the risk of secondary peaks.This contrasts with the BRB system,which exhibits smaller vibration amplitudes about an increasingly deformed position due to seismic ratcheting.Unsurprisingly,residual deformations were high for the BRBs(1.7%on average)and negligible for the RSFJ.However,RSFJ produced smaller peak inter-storey drifts between 13%–18%but higher peak accelerations by 4%–5%.The results suggest that multi-storey braced frames could be designed with similar or smaller forces when self-centering systems are used. 展开更多
关键词 Comparative analysis Buckling-restrained braces BRB Resilient slip-friction joint RSFJ
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Seismic pseudo-static stability analysis of bedding jointed rock slope stability under the interaction of the upper dangerous rock mass and lower stepped slope mass based on acceleration assessment
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作者 LI De-jian XIAO Yu +3 位作者 YANG Yan-song YU Peng-cheng ZHANG Ying-bin ZHAO Lian-heng 《Journal of Central South University》 2025年第7期2619-2637,共19页
In the practical slope engineering,the stability of lower sliding mass(region A)with back tensile cracks of the jointed rock slope attracts more attentions,but the upper rock mass(region B)may also be unstable.Therefo... In the practical slope engineering,the stability of lower sliding mass(region A)with back tensile cracks of the jointed rock slope attracts more attentions,but the upper rock mass(region B)may also be unstable.Therefore,in this study,based on the stepped failure mode of bedding jointed rock slopes,considering the influence of the upper rock mass on the lower stepped sliding mass,the improved failure model for analyzing the interaction force(F_(AB))between two regions is constructed,and the safety factors(F_(S))of two regions and whole region are derived.In addition,this paper proposes a method to determine the existence of F_(AB) using their respective acceleration values(a_(A) and a_(B))when regions A and B are unstable.The influences of key parameters on two regions and the whole region are analyzed.The results show that the variation of the F_(AB) and F_(S) of two regions can be obtained accurately based on the improved failure model.The accuracy of the improved failure model is verified by comparative analysis.The research results can explain the interaction mechanism of two regions and the natural phenomenon of slope failure caused by the development of cracks. 展开更多
关键词 bedding jointed rock slope upper dangerous rock mass stepped sliding interaction mechanism stability analysis
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Failure Analysis of Composite Pre-tightened Multi-hierarchy Tooth Joint Based on Suture Structure
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作者 Fei Li Weizhao Chen +2 位作者 Yong Xiao Linjian Ma Yifeng Gao 《Journal of Bionic Engineering》 2025年第1期262-281,共20页
The connection efficiency of composite pre-tightened multi-tooth joint is low because of uneven load distribution and single load transmission path.In this paper,based on the principle of bio-tooth(suture)structure,co... The connection efficiency of composite pre-tightened multi-tooth joint is low because of uneven load distribution and single load transmission path.In this paper,based on the principle of bio-tooth(suture)structure,combining soft material with fractal,a composite pre-tightened multi-hierarchy tooth joint is proposed,and the bearing performance and failure process of the joint through experiments and finite element method under tensile load.First,the ultimate bearing capacity,load distribution ratio,and failure process of different hierarchies of teeth joints are studied through experiments.Then,the progressive damage models of different hierarchies of tooth joints are established,and experiments verify the validity of the finite element model.Finally,the effects of soft material and increasing tooth hierarchy on the failure process and bearing capacity of composite pre-tightened tooth joints are analyzed by the finite element method.The following conclusions can be drawn:(1)The embedding of soft materials changed the failure process of the joint.Increasing the tooth hierarchy can give the joint more load transfer paths,but the failure process of the joint is complicated.(2)Embedding soft materials and increasing the tooth hierarchy simultaneously can effectively improve the bearing capacity of composite pre-tightened tooth joints,which is 87.8%higher than that of traditional three-tooth joints. 展开更多
关键词 Composite pre-tightened multi-hierarchy teeth joint Tensile experiment Finite element analysis Failure process Suture structure
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Elucidating regulatory processes of intense physical activity by multi-omics analysis
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作者 Ernesto S.Nakayasu Marina A.Gritsenko +17 位作者 Young-Mo Kim Jennifer E.Kyle Kelly G.Stratton Carrie D.Nicora Nathalie Munoz Kathleen M.Navarro Daniel Claborne Yuqian Gao Karl K.Weitz Vanessa L.Paurus Kent J.Bloodsworth Kelsey A.Allen Lisa M.Bramer Fernando Montes Kathleen A.Clark Grant Tietje Justin Teeguarden Kristin E.Burnum-Johnson 《Military Medical Research》 SCIE CAS CSCD 2024年第4期479-499,共21页
Background:Physiological and biochemical processes across tissues of the body are regulated in response to the high demands of intense physical activity in several occupations,such as firefighting,law enforcement,mili... Background:Physiological and biochemical processes across tissues of the body are regulated in response to the high demands of intense physical activity in several occupations,such as firefighting,law enforcement,military,and sports.A better understanding of such processes can ultimately help improve human performance and prevent illnesses in the work environment.Methods:To study regulatory processes in intense physical activity simulating real-life conditions,we performed a multi-omics analysis of 3 biofluids(blood plasma,urine,and saliva)collected from 11 wildland firefighters before and after a 45 min,intense exercise regimen.Omics profiles post-vs.pre-exercise were compared by Student’s t-test followed by pathway analysis and comparison between the different omics modalities.Results:Our multi-omics analysis identified and quantified 3835 proteins,730 lipids and 182 metabolites combining the 3 different types of samples.The blood plasma analysis revealed signatures of tissue damage and acute repair response accompanied by enhanced carbon metabolism to meet energy demands.The urine analysis showed a strong,concomitant regulation of 6 out of 8 identified proteins from the renin-angiotensin system supporting increased excretion of catabolites,reabsorption of nutrients and maintenance of fluid balance.In saliva,we observed a decrease in 3 pro-inflammatory cytokines and an increase in 8 antimicrobial peptides.A systematic literature review identified 6 papers that support an altered susceptibility to respiratory infection.Conclusions:This study shows simultaneous regulatory signatures in biofluids indicative of homeostatic maintenance during intense physical activity with possible effects on increased infection susceptibility,suggesting that caution against respiratory diseases could benefit workers on highly physical demanding jobs. 展开更多
关键词 multi-omics analysis Intense exercise Human performance BIOFLUIDS Metabolism Immunity
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Effects of Joint Controller on Analytical Modal Analysis of Rotational Flexible Manipulator 被引量:8
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作者 CHU Ming ZHANG Yanheng +1 位作者 CHEN Gang SUN Hanxu 《Chinese Journal of Mechanical Engineering》 SCIE EI CAS CSCD 2015年第3期460-469,共10页
Modal analysis is a fundamental and important task for modeling and control of the flexible manipulator. However, almost all of the traditional modal analysis methods view the flexible manipulator as a pure mechanical... Modal analysis is a fundamental and important task for modeling and control of the flexible manipulator. However, almost all of the traditional modal analysis methods view the flexible manipulator as a pure mechanical structure and neglect feedback action of joint controller. In order to study the effects of joint controller on the modal analysis of rotational flexible manipulator, a closed-loop analytical modal analysis method is proposed. Firstly, two exact boundary constraints, namely servo feedback constraint and bending moment constraint, are derived to solve the vibration partial differential equation. It is found that the stiffness and damping gains of joint controller are both included in the boundary conditions, which lead to an unconventional secular term. Secondly, analytical algorithm based on Ritz approach is developed by using Laplace transform and complex modal approach to obtain the natural frequencies and mode shapes. And then, the numerical simulations are performed and the computational results show that joint controller has pronounced influence on the modal parameters: joint controller stiffness reduces the natural frequency, while joint controller damping makes the shape phase non-zero. Furthermore, the validity of the presented conclusion is confirmed through experimental studies. These findings are expected to improve the performance of dynamics simulation systems and model-based controllers. 展开更多
关键词 flexible manipulator analytical modal analysis boundary constraints joint controller
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Nonlinear interval analysis of rotor response with joints under uncertainties 被引量:10
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作者 Yanhong MA Yongfeng WANG +1 位作者 Cun WANG Jie HONG 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2020年第1期205-218,共14页
The dynamic influence of joints in aero-engine rotor systems is investigated in this paper.Firstly,the tangential stiffness and loss factor are obtained from an isolated lap joint setup with dynamic excitation experim... The dynamic influence of joints in aero-engine rotor systems is investigated in this paper.Firstly,the tangential stiffness and loss factor are obtained from an isolated lap joint setup with dynamic excitation experiments.Also,the influence of the normal contact pressure and the excitation level are examined,which revel the uncertainty in joints.Then,the updated Thin Layer Elements(TLEs)method with fitted parameters based on the experiments is established to simulate the dynamic properties of joints on the interface.The response of the rotor subjected to unbalance excitation is calculated,and the results illustrate the effectiveness of the proposed method.Meanwhile,using the Chebyshev inclusion function and a direct iteration algorithm,a nonlinear interval analysis method is established to consider the uncertainty of parameters in joints.The accuracy is proved by comparison with results obtained using the Monte-Carlo method.Combined with the updated TLEs,the nonlinear Chebyshev method is successfully applied on a finite model of a rotor.The study shows that substantial attention should be paid to the dynamical design for the joint in rotor systems,the dynamic properties of joints under complex loading and the corresponding interval analysis method need to be intensively studied. 展开更多
关键词 Aero-engine BOLTED jointS NONLINEAR interval analysis METHOD ROTOR dynamics UNCERTAINTIES Updated Thin Layer Elements(TLE)method
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Static and Dynamic Mechanics Analysis on Artificial Hip Joints with Different Interface Designs by the Finite Element Method 被引量:8
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作者 Hai-bo Jiang 《Journal of Bionic Engineering》 SCIE EI CSCD 2007年第2期123-131,共9页
Four different structural models of artificial joints were developed and the finite element method (FEM) was employed to investigate their mechanical characteristics under static and dynamic conditions. The material... Four different structural models of artificial joints were developed and the finite element method (FEM) was employed to investigate their mechanical characteristics under static and dynamic conditions. The materials used in the FEM calculation were ultra-high molecular weight polyethylene (UHMWPE), 316L stainless steel, CoCrMo alloy and Ti6A14V alloy. The stress distribution, strain, and elastic deformation under static and dynamic conditions were obtained. Analysis and comparison of the ~alculation results of different models were conducted. It is shown that with the same parameters the model of a metallic femur head covered with an artificial cartilage layer is more similar to the structure of the natural human joint and its mechanical characteristics are the best of the four models. 展开更多
关键词 finite element analysis STRESS articular joint
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Pushover analysis of reinforced concrete frames considering shear failure at beam-column joints 被引量:4
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作者 Y.C.Sung T.K.Lin +1 位作者 C.C.Hsiao M.C.Lai 《Earthquake Engineering and Engineering Vibration》 SCIE EI CSCD 2013年第3期373-383,共11页
Since most current seismic capacity evaluations of reinforced concrete (RC) frame structures are implemented by either static pushover analysis (PA) or dynamic time history analysis, with diverse settings of the p... Since most current seismic capacity evaluations of reinforced concrete (RC) frame structures are implemented by either static pushover analysis (PA) or dynamic time history analysis, with diverse settings of the plastic hinges (PHs) on such main structural components as columns, beams and walls, the complex behavior of shear failure at beam-column joints (BCJs) during major earthquakes is commonly neglected. This study proposes new nonlinear PA procedures that consider shear failure at BCJs and seek to assess the actual damage to RC structures. Based on the specifications of FEMA-356, a simplified joint model composed of two nonlinear cross struts placed diagonally over the location of the plastic hinge is established, allowing a sophisticated PA to be performed. To verify the validity of this method, the analytical results for the capacity curves and the failure mechanism derived from three different full-size RC frames are compared with the experimental measurements. By considering shear failure at BCJs, the proposed nonlinear analytical procedures can be used to estimate the structural behavior of RC frames, including seismic capacity and the progressive failure sequence of joints, in a precise and effective manner. 展开更多
关键词 RC frame beam-column joint pushover analysis capacity curve plastic hinge performance-based seismic evaluation
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Design and Analysis of Tapered Stress Joint for Top Tensioned Riser System 被引量:3
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作者 张日曦 张崎 黄一 《China Ocean Engineering》 SCIE EI 2012年第3期507-520,共14页
Stress Joint (SJ) plays a key role in the Top Tensioned Riser (TTR) system for deep water engineering. A preliminary design method of tapered SJ is proposed in the paper, which could help designers obtain accurate... Stress Joint (SJ) plays a key role in the Top Tensioned Riser (TTR) system for deep water engineering. A preliminary design method of tapered SJ is proposed in the paper, which could help designers obtain accurate design data. After a further sensitive analysis is carried out, the related parameters choice and control methods are recommended in the engineering practice. By taking the extreme environment conditions into consideration, the effects of bending stress reduction and curve control are analyzed, and the 3-D FE models are established by ABQOUS for numerical evaluation to verify the correctness of design results. At last, dynamic analysis and fatigue analysis, based on actual project, are carried out with designed stress joint. The analysis results prove the feasibility and guidance of this method in the practical engineering applications. 展开更多
关键词 stress joint (S J) top tensioned riser (TTR) design method parameters sensitivities dynamic analysis fatigue analysis
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Joint Analysis Method for Major Genes Controlling Multiple Correlated Quantitative Traits 被引量:5
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作者 XIAO Jing WANG Xue-feng HU Zhi-qiu TANG Zai-xiang SUI Jiong-ming LI Xin XU Chen-wu 《Agricultural Sciences in China》 CAS CSCD 2006年第3期179-187,共9页
Based on the major gene and polygene mixed inheritance model for multiple correlated quantitative traits, the authors proposed a new joint segregation analysis method of major gene controlling multiple correlated quan... Based on the major gene and polygene mixed inheritance model for multiple correlated quantitative traits, the authors proposed a new joint segregation analysis method of major gene controlling multiple correlated quantitative traits, which include major gene detection and its effect and variation estimation. The effect and variation of major gene are estimated by the maximum likelihood method implemented via expectation-maximization (EM) algorithm. Major gene is tested with the likelihood ratio (LR) test statistic. Extensive simulation studies showed that joint analysis not only increases the statistical power of major gene detection but also improves the precision and accuracy of major gene effect estimates. An example of the plant height and the number of tiller of F2 population in rice cross Duonieai x Zhonghua 11 was used in the illustration. The results indicated that the genetic difference of these two traits in this cross refers to only one pleiotropic major gene. The additive effect and dominance effect of the major gene are estimated as -21.3 and 40.6 cm on plant height, and 22.7 and -25.3 on number of tiller, respectively. The major gene shows overdominance for plant height and close to complete dominance for number of tillers. 展开更多
关键词 multiple correlated quantitative traits major gene joint segregation analysis maximum likelihood estimation EM algorithm
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Meta-analysis and trial sequential analysis on blood uric acid and joint function in gouty arthritis treated with fire needling therapy in comparison with western medication 被引量:10
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作者 Kai-feng DENG Liang-huizhi LI +8 位作者 Ting-zhen PAN Heng NING Hui-ling LU Yuan-xi HUANG Xue LI Xiao-hua YOU Dan-meng ZHU Ying ZHU Ri-lan CHEN 《World Journal of Acupuncture-Moxibustion》 CSCD 2022年第1期49-60,共12页
Objective:To conduct the meta-analysis and trial sequential analysis(TSA) on clinical trials of fire needling therapy in treatment of gouty arthritis and review systematically the clinical therapeutic effect of fire n... Objective:To conduct the meta-analysis and trial sequential analysis(TSA) on clinical trials of fire needling therapy in treatment of gouty arthritis and review systematically the clinical therapeutic effect of fire needling therapy on gouty arthritis so as to provide the medical evidences of the extensive application of this therapy in treatment of gouty arthritis.Methods:The relevant clinical trials of fire needling therapy for treatment of gouty arthritis were searched from China National knowledge Infrastructure,Wanfang Data Knowledge Service Platform,Chinese Science and Technology Journal Database,American Medical Online,Dutch Medical Literature Database and International Evidence-Based Medical library.Using Review Manager 5.3 software,the quality of the included trials was assessed and meta-analysis was performed.With TSA v0.9 software,the trial sequential analysis was conduced on the appropriate outcomes.Results:A total of 10 trials were included with 775 patients involved.The analysis results showed that compared with the western medication,the total effective rate(RR=1.14’95%CI [1.09,1.20]),the curative rate(RR=1.59’95%CI [1.33,1.89]),the reduced VAS score(MD=-1.44’ 95%CI [-1.93,-0.951]) and the reduced incidence of adverse reaction(RR=0.27’ 95% CI [0.09,0.76]) of the fire needling therapy were different significantly(all P <0.05).Regarding the reduction of blood uric acid(MD=-40.47’ 95%CI [-80.21,-0.72]) and the score of symptoms and physical signs(MD=-1.38’95% CI [-3.71,0.95]),the effect of fire needling therapy was similar to that of western medication group(both P≥0.05).The trial sequential analysis suggested that the result was reliable,in which,the total effective rate of fire needling therapy was much higher than the western medication.But,it was potentially a false-positive finding,in which,fire needling therapy was much more advantageous at reducing blood uric acid as compared with the western medication.Conclusion:Based on the analytic results,it can be determined that fire needling therapy,as an effective approach to the treatment of gouty arthritis,has a certain advantage as compared with western medication.Given the low overall quality of trials,it still needs high-quality clinical trial to verify the findings of this study results. 展开更多
关键词 Gouty arthritis Fire needle Blood uric acid joint function META-analysis Trial sequential analysis
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Sacroiliac joint stability: Finite element analysis of implant number, orientation, and superior implant length 被引量:3
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作者 Derek P Lindsey Ali Kiapour +1 位作者 Scott A Yerby Vijay K Goel 《World Journal of Orthopedics》 2018年第3期14-23,共10页
AIM To analyze how various implants placement variables affect sacroiliac(SI) joint range of motion. METHODS An experimentally validated finite element model of the lumbar spine and pelvis was used to simulate a fusio... AIM To analyze how various implants placement variables affect sacroiliac(SI) joint range of motion. METHODS An experimentally validated finite element model of the lumbar spine and pelvis was used to simulate a fusion of the SI joint using various placement configurations of triangular implants(iF use Implant System~?). Placement configurations were varied by changing implant orientation, superior implant length, and number of implants. The range of motion of the SI joint was calculated using a constant moment of 10 N-m with a follower load of 400 N. The changes in motion were compared between the treatment groups to assess how the different variables affected the overall motion of the SI joint. RESULTS Transarticular placement of 3 implants with superior implants that end in the middle of the sacrum resulted in the greatest reduction in range of motion(flexion/extension = 73%, lateral bending = 42%, axial rotation = 72%). The range of motions of the SI joints were reduced with use of transarticular orientation(9%-18%) when compared with an inline orientation. The use of a superior implant that ended mid-sacrum resulted in median reductions of(8%-14%) when compared with a superior implant that ended in the middle of the ala. Reducing the number of implants, resulted in increased SI joint range of motions for the 1 and 2 implant models of 29%-133% and 2%-39%, respectively,when compared with the 3 implant model.CONCLUSION Using a validated finite element model we demonstrated that placement of 3 implants across the SI joint using a transarticular orientation with superior implant reaching the sacral midline resulted in the most stable construct. Additional clinical studies may be required to confirm these results. 展开更多
关键词 Fusion Biomechanics MINIMALLY INVASIVE surgery SACROILIAC joint DYSFUNCTION Finite element analysis
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Multi-omics profile of exceptional long-term survivors of AJCC stage Ⅲ triple-negative breast cancer 被引量:1
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作者 Yang Ou-Yang Caijin Lin +2 位作者 Yifan Xie Xiaoqing Song Yi-Zhou Jiang 《Chinese Journal of Cancer Research》 2025年第3期316-336,共21页
Objective:Triple-negative breast cancer(TNBC)is a highly aggressive subtype that lacks targeted therapies,leading to a poorer prognosis.However,some patients achieve long-term recurrence-free survival(RFS),offering va... Objective:Triple-negative breast cancer(TNBC)is a highly aggressive subtype that lacks targeted therapies,leading to a poorer prognosis.However,some patients achieve long-term recurrence-free survival(RFS),offering valuable insights into tumor biology and potential treatment strategies.Methods:We conducted a comprehensive multi-omics analysis of 132 patients with American Joint Committee on Cancer(AJCC)stage III TNBC,comprising 36 long-term survivors(RFS≥8 years),62 moderate-term survivors(RFS:3-8 years),and 34 short-term survivors(RFS<3 years).Analyses investigated clinicopathological factors,whole-exome sequencing,germline mutations,copy number alterations(CNAs),RNA sequences,and metabolomic profiles.Results:Long-term survivors exhibited fewer metastatic regional lymph nodes,along with tumors showing reduced stromal fibrosis and lower Ki67 index.Molecularly,these tumors exhibited multiple alterations in genes related to homologous recombination repair,with higher frequencies of germline mutations and somatic CNAs.Additionally,tumors from long-term survivors demonstrated significant downregulation of the RTK-RAS signaling pathway.Metabolomic profiling revealed decreased levels of lipids and carbohydrate,particularly those involved in glycerophospholipid,fructose,and mannose metabolism,in long-term survival group.Multivariate Cox analysis identified fibrosis[hazard ratio(HR):12.70,95%confidence interval(95%CI):2.19-73.54,P=0.005]and RAC1copy number loss/deletion(HR:0.22,95%CI:0.06-0.83,P=0.026)as independent predictors of RFS.Higher fructose/mannose metabolism was associated with worse overall survival(HR:1.30,95%CI:1.01-1.68,P=0.045).Our findings emphasize the association between biological determinants and prolonged survival in patients with TNBC.Conclusions:Our study systematically identified the key molecular and metabolic features associated with prolonged survival in AJCC stage III TNBC,suggesting potential therapeutic targets to improve patient outcomes. 展开更多
关键词 Triple-negative breast cancer long-term survival homologous recombination repair multi-omics analysis metabolic profiling
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Finite Element Modeling and Modal Analysis of Complicated Structure with Bolted Joints 被引量:3
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作者 蒲大宇 廖日东 +1 位作者 左正兴 冯慧华 《Journal of Beijing Institute of Technology》 EI CAS 2009年第3期273-277,共5页
A contact bolt model is proposed as a new modeling technique to investigate the complex structure with bolted joints for modal analysis and compared with the coupled bolt model, and the test results are given. Among t... A contact bolt model is proposed as a new modeling technique to investigate the complex structure with bolted joints for modal analysis and compared with the coupled bolt model, and the test results are given. Among these models, the coupled bolt model provides the best accurate responses compared with the experimental results. The contact bolt model shows the best effectiveness and usefulness in view of operational time. The bolt models proposed in this study are adopted for a dynamic characteristic analysis of a large diesel engine consisting of several parts which are connected by many bolts. The dynamic behavior of the entire engine structure was investigated by experiment. The coupled bolt model and the contact bolt model were applied to model the assembly of engine with high preload. The experimental results are in good agreement with the finite element method (FEM) results. Compared with the other models, the contact bolt model presented in this paper is more effective and useful in view of operational time and experience of analysts. 展开更多
关键词 finite element method(FEM) bolted joints modal analysis internal combustion engine
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Incremental dynamic analysis of concrete gravity dams including base and lift joints 被引量:2
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作者 Mohammad Alembagheri Mohsen Ghaemian 《Earthquake Engineering and Engineering Vibration》 SCIE EI CSCD 2013年第1期119-134,共16页
The growth in computer processing power has made it possible to use time-consuming analysis methods such as incremental dynamic analysis(IDA) with higher accuracy in less time.In an IDA study,a series of earthquake ... The growth in computer processing power has made it possible to use time-consuming analysis methods such as incremental dynamic analysis(IDA) with higher accuracy in less time.In an IDA study,a series of earthquake records are applied to a structure at successively increasing intensity levels,which causes the structure to shift from the elastic state into the inelastic state and finally into collapse.In this way,the limit-states and capacity of a structure can be determined.In the present research,the IDA of a concrete gravity dam considering a nonlinear concrete behavior,and sliding planes within the dam body and at the dam-foundation interface,is performed.The influence of the friction angle and lift joint slope on the response parameters are investigated and the various limit-states of the dam are recognized.It is observed that by introducing a lift joint,the tensile damage can be avoided for the dam structure.The lift joint sliding is essentially independent of the base joint friction angle and the upper ligament over the inclined lift joint slides into the upstream direction in strong earthquakes. 展开更多
关键词 concrete gravity dams incremental dynamic analysis seismic analysis damage index dam failures jointS performance characteristics structural capacity
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Mineralization-related geochemical anomalies derived from stream sediment geochemical data using multifractal analysis in Pangxidong area of Qinzhou-Hangzhou tectonic joint belt, Guangdong Province, China 被引量:5
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作者 张焱 周永章 +8 位作者 王林峰 王正海 何俊国 安燕飞 李红中 曾长育 梁锦 吕文超 高乐 《Journal of Central South University》 SCIE EI CAS 2013年第1期184-192,共9页
Distinguishing geochemical anomalies from background is a basic task in exploratory geochemistry. The derivation of geochemical anomalies from stream sediment geochemical data and the decomposition of these anomalies ... Distinguishing geochemical anomalies from background is a basic task in exploratory geochemistry. The derivation of geochemical anomalies from stream sediment geochemical data and the decomposition of these anomalies into their component patterns were described. A set of stream sediment geochemical data was obtained for 1 880 km 2 of the Pangxidong area, which is in the southern part of the recently recognized Qinzhou-Hangzhou joint tectonic belt. This belt crosses southern China and tends to the northwest (NE) direction. The total number of collected samples was 7 236, and the concentrations of Ag, Au, Cu, As, Pb and Zn were measured for each sample. The spatial combination distribution law of geochemical elements and principal component analysis (PCA) were used to construct combination models for the identification of combinations of geochemical anomalies. Spectrum-area (S-A) fractal modeling was used to strengthen weak anomalies and separate them from the background. Composite anomaly modeling was combined with fractal filtering techniques to process and analyze the geochemical data. The raster maps of Au, Ag, Cu, As, Pb and Zn were obtained by the multifractal inverse distance weighted (MIDW) method. PCA was used to combine the Au, Ag, Cu, As, Pb, and Zn concentration values. The S-A fractal method was used to decompose the first component pattern achieved by the PCA. The results show that combination anomalies from a combination of variables coincide with the known mineralization of the study area. Although the combination anomalies cannot reflect local anomalies closely enough, high-anomaly areas indicate good sites for further exploration for unknown deposits. On this basis, anomaly and background separation from combination anomalies using fractal filtering techniques can provide guidance for later work. 展开更多
关键词 geochemical anomalies fractal modeling principal component analysis Qinzhou-Hangzhou joint tectonic belt streamsediments
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Elasto-plastic Analysis of Circular Tunnels in Jointed Rock Masses Satisfy the Hoek-Brown Failure Criterion 被引量:11
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作者 SUN Jin-shan LU Wen-bo ZHU Qi-hu CHEN Ming 《Journal of China University of Mining and Technology》 EI 2007年第3期393-398,共6页
The relationship between the Hoek-Brown parameters and the mechanical response of circular tunnels is il-lustrated. Closed-form and approximate solutions are given for the extent of the plastic zone and the stress and... The relationship between the Hoek-Brown parameters and the mechanical response of circular tunnels is il-lustrated. Closed-form and approximate solutions are given for the extent of the plastic zone and the stress and dis-placement fields under axisymmetrical and asymmetric stress conditions. For the same rock masses and under axisym-metrical stress conditions,the radius of the plastic zone in terms of Hoek-Brown criterion is generally an approximation of the radius in terms of the Mohr-Coulomb criterion. The radius in terms of the Hoek-Brown criterion is larger under low stress conditions. For poor quality rock masses (GSI<25),measures (such as grouting,setting rock bolts,etc.) that improve the GSI of rock masses are effective in improving the stability of tunnels. It is not advisable to improve the sta-bility of the tunnels by providing a small support resistance p through shotcrete,except for very poor quality jointed rock masses. Without reference to the quality of the rock mass,the disturbance factor D should not less than 0.5. Meas-ures which disturb rock masses during tunnel construction should be taken carefully when the tunnel depth increases. 展开更多
关键词 jointed rock masses circular tunnel general Hoek-Brown failure criterion elasto-plastic analysis con-struction measures
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Constraint and Mobility Change Analysis of Rubik’s Cube-inspired Reconfigurable Joints and Corresponding Parallel Mechanisms 被引量:4
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作者 Duanling Li Pu Jia +2 位作者 Jiazhou Li Dan Zhang Xianwen Kong 《Chinese Journal of Mechanical Engineering》 SCIE EI CAS CSCD 2020年第5期51-61,共11页
The current research of reconfigurable parallel mechanism mainly focuses on the construction of reconfigurable joints.Compared with the method of changing the mobility by physical locking joints,the geometric constrai... The current research of reconfigurable parallel mechanism mainly focuses on the construction of reconfigurable joints.Compared with the method of changing the mobility by physical locking joints,the geometric constraint has good controllability,and the constructed parallel mechanism has more configurations and wider application range.This paper presents a reconfigurable axis(rA)joint inspired and evolved from Rubik’s Cubes,which have a unique feature of geometric and physical constraint of axes of joint.The effectiveness of the rA joint in the construction of the limb is analyzed,resulting in a change in mobility and topology of the parallel mechanism.The rA joint makes the angle among the three axes inside the groove changed arbitrarily.This change in mobility is completed by the case illustrated by a 3(rA)P(rA)reconfigurable parallel mechanism having variable mobility from 1 to 6 and having various special configurations including pure translations,pure rotations.The underlying principle of the metamorphosis of this rA joint is shown by investigating the dependence of the corresponding screw system comprising of line vectors,leading to evolution of the rA joint from two types of spherical joints to three types of variable Hooke joints and one revolute joint.The reconfigurable parallel mechanism alters its topology by rotating or locking the axis of rA joint to turn all limbs into different phases.The prototype of reconfigurable parallel mechanism is manufactured and all configurations are enumerated to verify the validity of the theoretical method by physical experiments. 展开更多
关键词 Reciprocal screws Reconfigurable-axis(rA)joint Metamorphic parallel mechanism Constraint analysis
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