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Discovery of natural products capable of inducing porcine host defense peptide gene expression using cell-based high throughput screening 被引量:3
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作者 Jing Wang Wentao Lyu +5 位作者 Wei Zhang Yonghong Chen Fang Luo Yamin Wang Haifeng Ji Guolong Zhang 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2021年第2期598-610,共13页
Background:In-feed antibiotics are being phased out in livestock production worldwide.Alternatives to antibiotics are urgently needed to maintain animal health and production performance.Host defense peptides(HDPs)are... Background:In-feed antibiotics are being phased out in livestock production worldwide.Alternatives to antibiotics are urgently needed to maintain animal health and production performance.Host defense peptides(HDPs)are known for their broad-spectrum antimicrobial and immunomodulatory capabilities.Enhancing the synthesis of endogenous HDPs represents a promising antibiotic alternative strategy to disease control and prevention.Methods:To identify natural products with an ability to stimulate the synthesis of endogenous HDPs,we performed a high-throughput screening of 1261 natural products using a newly-established stable luciferase reporter cell line known as IPEC-J2/pBD3-luc.The ability of the hit compounds to induce HDP genes in porcine IPEC-J2 intestinal epithelial cells,3D4/31 macrophages,and jejunal explants were verified using RT-qPCR.Augmentation of the antibacterial activity of porcine 3D4/31 macrophages against a Gram-negative bacterium(enterotoxigenic E.coli)and a Gram-positive bacterium(Staphylococcus aureus)were further confirmed with four selected HDP-inducing compounds.Results:A total of 48 natural products with a minimum Z-score of 2.0 were identified after high-throughput screening,with 21 compounds giving at least 2-fold increase in luciferase activity in a follow-up dose-response experiment.Xanthohumol and deoxyshikonin were further found to be the most potent in inducing pBD3 mRNA expression,showing a minimum 10-fold increase in IPEC-J2,3D4/31 cells,and jejunal explants.Other compounds such as isorhapontigenin and calycosin also enhanced pBD3 mRNA expression by at least 10-fold in both IPEC-J2 cells and jejunal explants,but not 3D4/31 cells.In addition to pBD3,other porcine HDP genes such as pBD2,PG1-5,and pEP2C were induced to different magnitudes by xanthohumol,deoxyshikonin,isorhapontigenin,and calycosin,although clear gene-and cell type-specific patterns of regulation were observed.Desirably,these four compounds had a minimum effect on the expression of several representative inflammatory cytokine genes.Furthermore,when used at HDP-inducing concentrations,these compounds showed no obvious direct antibacterial activity,but significantly augmented the antibacterial activity of 3D4/31 macrophages(P<0.05)against both Gram-negative and Gram-positive bacteria.Conclusions:Our results indicate that these newly-identified natural HDP-inducing compounds have the potential to be developed as novel alternatives to antibiotics for prophylactic and therapeutic treatment of infectious diseases in livestock production. 展开更多
关键词 Antibiotic alternatives high throughput screening HDP inducers Host defense peptides Natural products
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High throughput screening of single atomic catalysts with optimized local structures for the electrochemical oxygen reduction by machine learning 被引量:1
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作者 Hao Sun Yizhe Li +7 位作者 Liyao Gao Mengyao Chang Xiangrong Jin Boyuan Li Qingzhen Xu Wen Liu Mingyue Zhou Xiaoming Sun 《Journal of Energy Chemistry》 SCIE EI CAS CSCD 2023年第6期349-357,I0009,共10页
Single atomic catalysts(SACs),especially metal-nitrogen doped carbon(M-NC)catalysts,have been extensively explored for the electrochemical oxygen reduction reaction(ORR),owing to their high activity and atomic utiliza... Single atomic catalysts(SACs),especially metal-nitrogen doped carbon(M-NC)catalysts,have been extensively explored for the electrochemical oxygen reduction reaction(ORR),owing to their high activity and atomic utilization efficiency.However,there is still a lack of systematic screening and optimization of local structures surrounding active centers of SACs for ORR as the local coordination has an essential impact on their electronic structures and catalytic performance.Herein,we systematic study the ORR catalytic performance of M-NC SACs with different central metals and environmental atoms in the first and second coordination sphere by using density functional theory(DFT)calculation and machine learning(ML).The geometric and electronic informed overpotential model(GEIOM)based on random forest algorithm showed the highest accuracy,and its R^(2) and root mean square errors(RMSE)were 0.96 and 0.21,respectively.30 potential high-performance catalysts were screened out by GEIOM,and the RMSE of the predicted result was only 0.12 V.This work not only helps us fast screen high-performance catalysts,but also provides a low-cost way to improve the accuracy of ML models. 展开更多
关键词 Single atomic catalysts Coordination sphere high throughput screening Machine learning Oxygen reduction reaction
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A High-affinity Activator of G551D-CFTR Chloride Channel Identified By High Throughput Screening 被引量:1
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作者 ZHAOLu HECheng-yan +4 位作者 LIUYan-li ZHOUHong-lan ZHOUJin-song SHANGDe-jing YANGHong 《Chemical Research in Chinese Universities》 SCIE CAS CSCD 2004年第6期738-742,共5页
A stably transfected CHO cell line coexpressing G551D-CFTR and iodide-sensitive yellow fluorescent protein mutant EYFP-H148Q-I152L was successfully established and used as assay model to identify small-molecule activa... A stably transfected CHO cell line coexpressing G551D-CFTR and iodide-sensitive yellow fluorescent protein mutant EYFP-H148Q-I152L was successfully established and used as assay model to identify small-molecule activators of G551D-CFTR chloride channel from 100000 diverse combinatorial compounds by high throughput screening on a customized Beckman robotic system. A bicyclooctane compound was identified to activate G551D-CFTR chloride channel with high-affinity(K d=1.8 μmol/L). The activity of the bicyclooctane compound is G551D-CFTR-specific, reversible and non-toxic. The G551D-CFTR activator may be useful as a tool to study the mutant G551D-CFTR chloride channel structure and transport properties and as a candidate drug to cure cystic fibrosis caused by G551D-CFTR mutation. 展开更多
关键词 Cystic fibrosis Yellow fluorescent protein(YFP) high throughput screening(HTS) Small molecule
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Self-encoding Functional Resin Applying for Combinatorial Chemistry and High Throughput Screening
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作者 杜磊 《Journal of Wuhan University of Technology(Materials Science)》 SCIE EI CAS 2004年第3期29-32,共4页
A novel solid phase organic synthesis resin was synthesized for combinatorial high-throughput screening,which based on FTIR spectra self-encoding functional resin technology. A new deconvolution strategy termed positi... A novel solid phase organic synthesis resin was synthesized for combinatorial high-throughput screening,which based on FTIR spectra self-encoding functional resin technology. A new deconvolution strategy termed position encoding deconvolution had illustrated and was compared with some popular combinatorial deconvolution strategies in efficiency and information content. The mimic high throughput screening of hexapeptide library successfully proved the applying of the self-encoding functional resin technology and the position encoding deconvolution strategy. 展开更多
关键词 combinatorial ENCODING FTIR high throughput screening RESIN
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A Class of High-affinity Bicyclooctane G551D-CFTR Activators Identified by High Throughput Screening
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作者 HECheng-yan ZHAOLu +3 位作者 LIUYan-li XULi-na SHANGDe-jing YANGHong 《Chemical Research in Chinese Universities》 SCIE CAS CSCD 2004年第6期743-746,共4页
The glycine-to-aspartic acid missense mutation at the codon 551(G551D) of the cystic fibrosis transmembrane conductance regulator(CFTR) is one of the five most frequent cystic fibrosis(CF) mutations associated with a ... The glycine-to-aspartic acid missense mutation at the codon 551(G551D) of the cystic fibrosis transmembrane conductance regulator(CFTR) is one of the five most frequent cystic fibrosis(CF) mutations associated with a severe CF phenotype. To explore the feasibility of pharmacological correction of disrupted activation of CFTR chloride channel caused by G551D mutation, we developed a halide-sensitive fluorescence miniassay for G551D-CFTR in Fisher rat thyroid(FRT) epithelial cells for the discovery of novel activators of G551D-CFTR. A class of bicyclooctane small molecule compounds that efficiently stimulate G551D-CFTR chloride channel activity was identified by high throughput screening via the FRT cell-based assay. This class of compounds selectively activates G551D-CFTR with a high affinity, whereas little effect of the compounds on wildtype CFTR can be seen. The discovery of a class of bicyclooctane G551D-CFTR activators will permit the analysis of structure-activity relationship of the compounds to identify ideal leads for in vivo therapeutic studies. 展开更多
关键词 Cystic fibrosis G551D-CFTR ACTIVATORS Cell-based assay Small molecule high throughput screening
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INTRODUCTION OF THE HIGH THROUGHPUT SCREENING SYSTEM
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作者 李元 《Chinese Medical Sciences Journal》 CAS CSCD 2001年第3期179-181,共3页
In this article, we introduce the system of high throughput screening (HTS). Its role in new drug study and current development is described. The relationship between research achievements of genome study and new type... In this article, we introduce the system of high throughput screening (HTS). Its role in new drug study and current development is described. The relationship between research achievements of genome study and new type screening model of new drugs is emphasized. The personal opinions of current problems about HTS study in China are raised. 展开更多
关键词 high throughput screening new drug screening recombinant protein target automatic analysis
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Optimal amino acid system for early embryo development in sows based on response surface methodology and high-throughput screening cell models
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作者 Xinyu Wang Jun Huang +12 位作者 Yanlong Li Zhekun Zhu Bangxin Xue Yueyang Meng Jiale Bao Ran Ning Siyu Li Fang Chen Shihai Zhang Xiangzhou Zeng Shuang Cai Chuanjiang Cai Xiangfang Zeng 《Journal of Animal Science and Biotechnology》 2025年第3期1324-1340,共17页
Background Early embryo development plays a pivotal role in determining pregnancy outcomes,postnatal development,and lifelong health.Therefore,the strategic selection of functional nutrients to enhance embryo developm... Background Early embryo development plays a pivotal role in determining pregnancy outcomes,postnatal development,and lifelong health.Therefore,the strategic selection of functional nutrients to enhance embryo development is of paramount importance.In this study,we established a stable porcine trophectoderm cell line expressing dual fluorescent reporter genes driven by the CDX2 and TEAD4 gene promoter segments using lentiviral transfection.Results Three amino acid metabolites—kynurenic acid,taurine,and tryptamine—met the minimum z-score criteria of 2.0 for both luciferase and Renilla luciferase activities and were initially identified as potential metabolites for embryo development,with their beneficial effects validated by qPCR.Given that the identified metabolites are closely related to methionine,arginine,and tryptophan,we selected these three amino acids,using lysine as a standard,and employed response surface methodology combined with our high-throughput screening cell model to efficiently screen and optimize amino acid combination conducive to early embryo development.The optimized candidate amino acid system included lysine(1.87 mmol/L),methionine(0.82 mmol/L),tryptophan(0.23 mmol/L),and arginine(3 mmol/L),with the ratio of 1:0.43:0.12:1.60.In vitro experiments confirmed that this amino acid system enhances the expression of key genes involved in early embryonic development and improves in vitro embryo adhesion.Transcriptomic analysis of blastocysts suggested that candidate amino acid system enhances early embryo development by regulating early embryonic cell cycle and differentiation,as well as improving nutrient absorption.Furthermore,based on response surface methodology,400 sows were used to verify this amino acid system,substituting arginine with the more cost-effective N-carbamoyl glutamate(NCG),a precursor of arginine.The optimal dietary amino acid requirement was predicted to be 0.71%lysine,0.32%methionine,0.22%tryptophan,and 0.10%NCG for sows during early gestation.The optimized amino acid system ratio of the feed,derived from the peripheral release of essential amino acids,was found to be 1:0.45:0.13,which is largely consistent with the results obtained from the cell model optimization.Subsequently,we furtherly verified that this optimal dietary amino acid system significantly increased total litter size,live litter size and litter weight in sows.Conclusions In summary,we successfully established a dual-fluorescent high-throughput screening cell model for the efficient identification of potential nutrients that would promote embryo development and implantation.This innovative approach overcomes the limitations of traditional amino acid nutrition studies in sows,providing a more effective model for enhancing reproductive outcomes. 展开更多
关键词 Amino acid Embryonic development high throughput screening NUTRIENT Response Surface Methodology
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The development of a sensitive fluorescent protein-based transcript reporter for high throughput screening of negative modulators of lncRNAs 被引量:5
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作者 Zongyue Zeng Bo Huang +28 位作者 Shifeng Huang Ruyi Zhang Shujuan Yan Xinyi Yu Yi Shu Chen Zhao Jiayan Lei Wenwen Zhang Chao Yang Ke Wu Ying Wu Liping An Xiaojuan Ji Cheng Gong Chengfu Yuan Linghuan Zhang Wei Liu Yixiao Feng Bo Zhang Zhengyu Dai Yi Shen Xi Wang Wenping Luo Rex C.Haydon Hue H.Luu Lan Zhou Russell R.Reid Tong-Chuan He Xingye Wu 《Genes & Diseases》 SCIE 2018年第1期62-74,共13页
While the human genome is pervasively transcribed,<2%of the human genome is transcribed into protein-coding mRNAs,leaving most of the transcripts as noncoding RNAs,such as microRNAs and long-noncoding RNAs(lncRNAs)... While the human genome is pervasively transcribed,<2%of the human genome is transcribed into protein-coding mRNAs,leaving most of the transcripts as noncoding RNAs,such as microRNAs and long-noncoding RNAs(lncRNAs),which are critical components of epigenetic regulation.lncRNAs are emerging as critical regulators of gene expression and genomic stability.However,it remains largely unknown about how lncRNAs are regulated.Here,we develop a highly sensitive and dynamic reporter that allows us to identify and/or monitor negative modulators of lncRNA transcript levels in a high throughput fashion.Specifically,we engineer a fluorescent fusion protein by fusing three copies of the PEST destruction domain of mouse ornithine decarboxylase(MODC)to the C-terminal end of the codon-optimized bilirubin-inducible fluorescent protein,designated as dBiFP,and show that the dBiFP protein is highly destabilized,compared with the commonly-used eGFP protein.We further demonstrate that the dBiFP signal is effectively down-regulated when the dBiFP and mouse lncRNA H19 chimeric transcript is silenced by mouse H19-specific siRNAs.Therefore,our results strongly suggest that the dBiFP fusion protein may serve as a sensitive and dynamic transcript reporter to monitor the inhibition of lncRNAs by microRNAs,synthetic regulatory RNA molecules,RNA binding proteins,and/or small molecule inhibitors so that novel and efficacious inhibitors targeting the epigenetic circuit can be discovered to treat human diseases such as cancer and other chronic disorders. 展开更多
关键词 BiFP Green fluorescent protein high throughput screening lncRNA Noncoding RNA Transcript reporter assay
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High throughput screening of mesenchymal stromal cell morphological response to inflammatory signals for bioreactor-based manufacturing of extracellular vesicles that modulate microglia 被引量:1
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作者 Andrew M.Larey Thomas M.Spoerer +5 位作者 Kanupriya R.Daga Maria G.Morfin Hannah M.Hynds Jana Carpenter Kelly M.Hines Ross A.Marklein 《Bioactive Materials》 SCIE CSCD 2024年第7期153-171,共19页
Due to their immunomodulatory function,mesenchymal stromal cells(MSCs)are a promising therapeutic with the potential to treat neuroinflammation associated with neurodegenerative diseases.This function is mediated by s... Due to their immunomodulatory function,mesenchymal stromal cells(MSCs)are a promising therapeutic with the potential to treat neuroinflammation associated with neurodegenerative diseases.This function is mediated by secreted extracellular vesicles(MSC-EVs).Despite established safety,MSC clinical translation has been unsuccessful due to inconsistent clinical outcomes resulting from functional heterogeneity.Current approaches to mitigate functional heterogeneity include‘priming’MSCs with inflammatory signals to enhance function.However,comprehensive evaluation of priming and its effects on MSC-EV function has not been performed.Furthermore,clinical translation of MSC-EV therapies requires significant manufacturing scale-up,yet few studies have investigated the effects of priming in bioreactors.As MSC morphology has been shown to predict their immunomodulatory function,we screened MSC morphological response to an array of priming signals and evaluated MSC-EV identity and potency in response to priming in flasks and bioreactors.We identified unique priming conditions corresponding to distinct morphologies.These conditions demonstrated a range of MSC-EV preparation quality and lipidome,allowing us to discover a novel MSC-EV manufacturing condition,as well as gain insight into potential mechanisms of MSC-EV microglia modulation.Our novel screening approach and application of priming to MSC-EV bioreactor manufacturing informs refinement of larger-scale manufacturing and enhancement of MSC-EV function. 展开更多
关键词 Mesenchymal stromal cell high throughput screening Extracellular vesicle BIOREACTOR MICROGLIA LIPIDOMICS
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A high throughput antiviral screening platform for alphaviruses based on Semliki Forest virus expressing eGFP reporter gene
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作者 Yu-Jia Shi Jia-Qi Li +4 位作者 Hong-Qing Zhang Cheng-Lin Deng Qin-Xuan Zhu Bo Zhang Xiao-Dan Li 《Virologica Sinica》 SCIE CAS CSCD 2023年第4期585-594,共10页
Alphaviruses,which contain a variety of mosquito-borne pathogens,are important pathogens of emerging/reemerging infectious diseases and potential biological weapons.Currently,no specific antiviral drugs are available ... Alphaviruses,which contain a variety of mosquito-borne pathogens,are important pathogens of emerging/reemerging infectious diseases and potential biological weapons.Currently,no specific antiviral drugs are available for the treatment of alphaviruses infection.For most highly pathogenic alphaviruses are classified as risk group-3 agents,the requirement of biosafety level 3(BSL-3)facilities limits the live virus-based antiviral study.To facilitate the antiviral development of alphaviruses,we developed a high throughput screening(HTS)platform based on a recombinant Semliki Forest virus(SFV)which can be manipulated in BSL-2 laboratory.Using the reverse genetics approach,the recombinant SFV and SFV reporter virus expressing eGFP(SFV-eGFP)were successfully rescued.The SFV-eGFP reporter virus exhibited robust eGFP expression and remained relatively stable after four passages in BHK-21 cells.Using a broad-spectrum alphavirus inhibitor ribavirin,we demonstrated that the SFV-eGFP can be used as an effective tool for antiviral study.The SFV-eGFP reporter virus-based HTS assay in a 96-well format was then established and optimized with a robust Z0 score.A section of reference compounds that inhibit highly pathogenic alphaviruses were used to validate that the SFV-eGFP reporter virus-based HTS assay enables rapid screening of potent broad-spectrum inhibitors of alphaviruses.This assay provides a safe and convenient platform for antiviral study of alphaviruses. 展开更多
关键词 ALPHAVIRUS Semliki Forest virus Reporter virus high throughput screening Inhibitor
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Statistical considerations for high throughput screening data
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作者 Xian-Jin XIE 《Frontiers in Biology》 CSCD 2010年第4期354-360,共7页
High throughput screening(HTS)is a widely used effective approach in genome-wide association and large scale protein expression studies,drug discovery,and biomedical imaging research.How to accurately identify candid... High throughput screening(HTS)is a widely used effective approach in genome-wide association and large scale protein expression studies,drug discovery,and biomedical imaging research.How to accurately identify candidate‘targets’or biologically meaningful features with a high degree of confidence has led to extensive statistical research in an effort to minimize both false-positive and false-negative rates.A large body of literature on this topic with in-depth statistical contents is available.We examine currently available statistical methods on HTS and aim to summarize some selected methods into a concise,easy-tofollow introduction for experimental biologists. 展开更多
关键词 high throughput screen false-positive rate false-negative rate target discovery predictive modeling
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Discovering macrocycles for humid carbon capture via high-throughput computational screening
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作者 Yutao Guan Aiting Kai Ming Liu 《Science China Chemistry》 2026年第1期1-2,共2页
Since the mid-to-late 20th century,the scientific community has increasingly recognized that the rapid rise in atmospheric greenhouse gases,particularly CO_(2)from human activities,is the primary driver of global warm... Since the mid-to-late 20th century,the scientific community has increasingly recognized that the rapid rise in atmospheric greenhouse gases,particularly CO_(2)from human activities,is the primary driver of global warming.This escalation has led to pressing climate challenges,including sea-level rise and more frequent extreme weather events[1,2].Among the limited strategies available to mitigate CO_(2)emissions,carbon capture and storage have emerged as a key approach.To this end,various adsorbents—such as metalorganic frameworks(MOFs),zeolites,and carbon materials—have been developed for CO_(2)capture[3-6]. 展开更多
关键词 global warmingthis high throughput computational screening climate challengesincluding greenhouse gases capture storage macrocycles CO extreme weather events
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Laser-emission vibrational microscopy of microdroplet arrays for high-throughput screening of hyperlipidemia
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作者 Zhonghao Li Zhihan Cai +9 位作者 Yuhan Wang Yuliang Liu Guifeng Li Xi Yang Ming Deng Yu-Cheng Chen Jichun Yang Yang Luo Chaoyang Gong Tao Zhu 《Light: Science & Applications》 2025年第12期3925-3934,共10页
The mechanical properties of biological fluids serve as early indicators of disease,offering valuable insights into complex physiological and pathological processes.However,the existing technologies struggle to achiev... The mechanical properties of biological fluids serve as early indicators of disease,offering valuable insights into complex physiological and pathological processes.However,the existing technologies struggle to achieve high-throughput measurement,limiting their widespread applications in disease diagnosis.Here,we propose laser-emission vibrational microscopy of microdroplets for high-throughput measurement of the intrinsic mechanical properties of fluids.The microdroplet array supporting high Q-factor(104)whispering gallery modes(WGM)lasing was massively fabricated on a superhydrophobic surface with inkjet printing.Ultrasound was employed to actuate the mechanical vibrations of the microdroplets,and the vibration amplitude was quantified using time-resolved laser spectra.We found that the stimulus-response of the laser emission is strongly dependent on the liquid viscosity.Fast mapping of the microdroplets’viscosities was achieved by stage scanning.High-throughput screening of hyperlipidemia disease was also demonstrated by performing over 2000 measurements within 25 min.Thanks to the small volume of the microdroplets,a single drop of blood can support over seven million measurements.The high-throughput ability and small sample consumption make it a promising tool for clinical diagnoses based on mechanical properties. 展开更多
关键词 laser emission vibrational microscopy intrinsic mechanical properties disease diagnosisherewe microdroplet array high throughput screening hyperlipidemia mechanical properties biological fluids
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Exploring stable Lieb lattices in twodimensional binary metal-inorganic frameworks:a high-throughput screening approach
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作者 Kai Zhang Yifan Li +3 位作者 Dayong Wang Haifeng Lv Xiaojun Wu Jinlong Yang 《npj Computational Materials》 2025年第1期4094-4103,共10页
The Lieb lattice is fundamental in condensed matter physics for hosting exotic electronic and topological states.Through high-throughput computational screening of 1470 binary metal-inorganic frameworks(MIFs),we ident... The Lieb lattice is fundamental in condensed matter physics for hosting exotic electronic and topological states.Through high-throughput computational screening of 1470 binary metal-inorganic frameworks(MIFs),we identified 24 stable Lieb lattice structures,including 22 new materials.These comprise 15 nonmagnetic,2 ferromagnetic(FM)half-metals,and 7 antiferromagnetic semiconductors,with critical temperatures reaching 877 K.Key electronic features include flat bands,Dirac cones,and van Hove singularities.HfCl_(2)and WO_(2)are FM half-metals with large spin gaps(5.37 eV and 3.57 eV),enabling full spin polarization.Be_(2)C and ReF_(2)exhibit nodal loops and quasi-flat bands,respectively,hosting nontrivial topology confirmed by edge-state analysis.NineMIFs are zerodimensional electrides with work functions as low as 2.64 eV.Thirteen structures are ground-state phases,ensuring stability.These Lieb lattices offer promising platforms for high-temperature electronic,spintronic,and topological applications. 展开更多
关键词 lieb lattice electronic topological statesthrough van hove singularitieshfcl condensed matter physics high throughput screening flat bandsdirac conesand stable lieb lattice antiferromagnetic semiconductorswith
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From biomass waste to CO_(2)capture:a multi-fidelity machine learning workflow for high-throughput screening of activated carbons
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作者 Faezeh Hajiali Naoko Ellis Bhushan Gopaluni 《npj Computational Materials》 2025年第1期3964-3975,共12页
Rising atmospheric CO_(2)levels threaten climate stability,demanding transformative solutions in carbon capture,utilization,and storage.Porous activated carbons(ACs)derived from sustainable waste sources offer a promi... Rising atmospheric CO_(2)levels threaten climate stability,demanding transformative solutions in carbon capture,utilization,and storage.Porous activated carbons(ACs)derived from sustainable waste sources offer a promising route for cost-effective and eco-friendly carbon capture,thanks to their tunable surface chemistry and high surface areas.However,optimizing ACs for peak CO_(2)uptake is often hindered by complex,resource-intensive experimental workflows and the scarcity of highquality data.This study presents a machine learning-driven framework that combines a multi-headed one-dimensional convolutional neural network(MH1DCNN)with multi-fidelity Bayesian optimization(MFBO)to efficiently navigate large design spaces by balancing exploration of uncertain regions with exploitation of known high-performing candidates.The MH1DCNN captures nonlinear relationships between physicochemical properties and CO_(2)uptake,serving as a deployable low-fidelity model.Using 841 literature-reported samples as high-cost,high-fidelity data and MH1DCNN-generated predictions as low-cost,low-fidelity evaluations,MFBO fuses these information sources through a probabilistic surrogate model,enabling rapid and cost-effective optimization.This approach reduces high-fidelity evaluation requirements by over75%and identifies top-performing candidates using only 13 high-fidelity acquisitions.This scalable,data-driven strategy supports the development of closedloop experiment-analysis-planning systems for future autonomous laboratories and accelerates sustainable materials discovery. 展开更多
关键词 sustainable materials discovery carbon capturethanks carbon capture activated carbons acs derived sustainable waste sources machine learning high throughput screening multi fidelity bayesian optimization
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Drug discovery from traditional Chinese herbal medicine using high content imaging technology 被引量:2
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作者 Min Fu 《Journal of Traditional Chinese Medical Sciences》 2021年第3期198-204,共7页
Traditional Chinese medicine(TCM) has been widely used in China and other Asia countries for thousands of years to treat or prevent human diseases. Chinese herbal medicine, one of the most important components of TCM,... Traditional Chinese medicine(TCM) has been widely used in China and other Asia countries for thousands of years to treat or prevent human diseases. Chinese herbal medicine, one of the most important components of TCM, has unique diversities in chemical components, and thus results in a wide range of biological activities. However, pharmaceutical industry is facing a major challenge to develop a large population of novel natural products and drugs, and considerable efforts have not resulted in highvolume of novel drug discovery and productivity. At present, increasing attention has been paid to Chinese herb medicine modernization in combination with the cutting-age technologies of drug discovery, especially the high throughput selection. High content imaging is an image-based high throughput screening method by using automated microscopy and image analysis software to capture and analyze phenotypes at a large scale to investigate multiple biological features simultaneously in the biological complex. Here, we described the pipeline of the state-of-the-art high content imaging technology, summarized the applications of the high content imaging technology in drug discovery from traditional Chinese herbal medicine, and finally discussed the current challenges and future perspectives for development of high throughput image-based screening technology in novel drug research and discovery. 展开更多
关键词 Traditional Chinese medicine(TCM) Chinese herbal medicine high throughput screening(HTS) high content imaging
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Identification and optimization of a potent and highly selective D3 dopamine receptor agonist
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作者 Amy E MORITZ R Benjamin FREE +11 位作者 Warren WEINER Muzna BACHANI Trevor DOYLE Noel SOUTHALL Marc FERRER Jonathan A JAVITCH Joseph STEINER Ara ABRAMYAN Lei SHI Jeffrey AUBé Kevin FRANKOWSKI David R SIBLEY 《中国药理学与毒理学杂志》 CAS CSCD 北大核心 2017年第10期950-951,共2页
OBJECTIVE Dopamine receptors(DRs) are involved in the development and treatment of many neuropsychiatric disorders.Currently available dopaminergic drugs modulate both DRD2 and DRD3,leading to side effects and uncerta... OBJECTIVE Dopamine receptors(DRs) are involved in the development and treatment of many neuropsychiatric disorders.Currently available dopaminergic drugs modulate both DRD2 and DRD3,leading to side effects and uncertainty as to the roles each DR subtype plays physiologically.Our lab employed high throughput screening paradigms to discover highly selective modulators for the DRD3.METHODS The NIH Molecular Libraries Program 400,000 + small molecule library was screened using the Discove Rx Path Hunter?β-arrestin assay for compounds that activate the DRD3 without effects on the DRD2.Confirmation and counter-screens assessed selectivity and mechanisms of action.We identified 62 potential agonists,and chose the most promising to perform a structure-activity relationship(SAR) study to increase potency while maintaining selectivity.The lead compound identified through this process,ML417,was also characterized using bioluminescence resonance energy transfer(BRET)-based β-arrestin recruitment and G-protein activation assays as well as p-ERK assays.Potential neuroprotective properties of this compound were assessed using a SHSY5 Y neuronal cell model.RESULTS ML417 displays potent,DRD3-selective agonist activity in multiple functional assays.Binding and functional GPCR screens(>165 receptors) show ML417 has limited cross-reactivity with other GPCRs.ML417 also displays superior(compared to the reference compound pramipexole),dose-dependent protection against a decrease in neurite length induced by 10 μmol·L^(-1) of the neurotoxin,6-hydroxydopamine,in the SHSY5 Y cell model.CONCLUSION We have discovered and characterized ML417,a potent and highly selective DRD3 agonist.This compound will be useful as a research tool,and may prove useful as a therapeutic drug lead. 展开更多
关键词 Dopamine receptor high throughput screening subtype selectivity NEUROPROTECTION
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High throughput computational screening and interpretable machine learning for iodine capture of metal-organic frameworks 被引量:1
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作者 Haoyi Tan Yukun Teng Guangcun Shan 《npj Computational Materials》 2025年第1期1263-1271,共9页
The removal of leaked radioactive iodine isotopes in humid air environments holds significant importance in nuclear waste management and nuclear accident mitigation.In this study,highthroughput computational screening... The removal of leaked radioactive iodine isotopes in humid air environments holds significant importance in nuclear waste management and nuclear accident mitigation.In this study,highthroughput computational screening and machine learning were combined to reveal the iodine capture performance of 1816 metal-organic framework(MOF)materials under humid air conditions.Initially,the relationship between the structural characteristics of MOF materials(including density,surface area and pore features)and their adsorption properties was explored,with the aim of identifying the optimal structural parameters for iodine capture.Subsequently,two machine learning regression algorithms—Random Forest and CatBoost,were employed to predict the iodine adsorption capabilities of MOF materials.In addition to 6 structural features,25 molecular features(encompassing the types of metal and ligand atoms as well as bonding modes)and 8 chemical features(including heat of adsorption and Henry’s coefficient)were incorporated to enhance the prediction accuracy of the machine learning algorithms.Feature importance was assessed to determine the relative influence of various features on iodine adsorption performance,in which the Henry’s coefficient and heat of adsorption to iodine were found the two most crucial chemical factors.Furthermore,four types of molecular fingerprints were introduced for providing comprehensive and detailed structural information of MOF materials.The 20 most significant Molecular ACCess Systems(MACCS)bits were picked out,revealing that the presence of six-membered ring structures and nitrogen atomsin theMOFframeworkwere the key structural factors that enhanced iodine adsorption,followed by the presence of oxygen atoms.This work combined high-throughput computation,machine learning,and molecular fingerprints to comprehensively and systematically elucidate the multifaceted factors governing the iodine adsorption performance of MOFs in humid environments,establishing a robust and profound guideline framework for accelerating the screening and targeted design of high-performance MOF materials. 展开更多
关键词 removal leaked radioactive iodine isotopes iodine capture high throughput computational screening nuclear waste management interpretable machine learning humid air conditions metal organic frameworks machine learning
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A general protocol for phosphorescent platinum(Ⅱ)complexes:generation,high throughput virtual screening and highly accurate predictions
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作者 Shuai Wang ChiYung Yam +4 位作者 LiHong Hu Faan-Fung Hung Shuguang Chen Chi-Ming Che GuanHua Chen 《Materials Futures》 2025年第2期208-217,共10页
The utilization of phosphorescent metal complexes as emissive dopants for organic light-emitting diodes(OLEDs)has been the subject of intense research.Cyclometalated Pt(Ⅱ)complexes are particularly popular triplet em... The utilization of phosphorescent metal complexes as emissive dopants for organic light-emitting diodes(OLEDs)has been the subject of intense research.Cyclometalated Pt(Ⅱ)complexes are particularly popular triplet emitters due to their color-tunable emissions.To make them viable for practical applications as OLED emitters,it is essential to develop Pt(Ⅱ)complexes with high radiative decay rate constants(k_(r))and photoluminescence quantum yields(PLQY).To this end,an efficient and accurate prediction tool is highly desirable.In this work,we propose a general yet powerful protocol achieving metal complex generation,high throughput virtual screening(HTVS),and fast predictions with high accuracy.More than 3600 potential structures are generated in a synthesis-friendly manner.Moreover,three HTVS-machine learning(ML)models are established using different algorithms with carefully designed features that are suitable for metal complexes.Specifically,30 potential candidates are filtered out by HTVS-ML models with a three-tier screening rule and put into accurate predictions with experimental calibrationΔ-learning method.The highly accurate prediction approach further reduces the stress of experiments and inspires greater confidence in identifying the most promising complexes as excellent emitters.As a result,12 promising complexes(k_(r)>10^(5) s^(−1) and PLQY>0.6)with the same superior core structures are confirmed from over 3600 Pt-complexes.Experiments revealed that two very close complexes have excellent emission properties and are consistent with the prediction results,providing strong evidence for the efficacy of the proposed protocol.We expect this protocol will become a valuable tool,expediting the rational design and rapid development of novel OLED materials with desired properties. 展开更多
关键词 phosphorescent emitters OLED GENERATION high throughput virtual screening machine learning
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Molecular descriptors for high-throughput virtual screening of fluorescence emitters with inverted singlet-triplet energy gaps
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作者 Yu Pang Juanjuan Wang +1 位作者 Junfang Yang Qian Peng 《npj Computational Materials》 2025年第1期3385-3392,共8页
The discovery of fluorescence materials with an inverted singlet-triplet(IST)energy gap,where the singlet excited state(S_(1))lies below the triplet excited state(T_(1)),mark a transformative advancement in organic li... The discovery of fluorescence materials with an inverted singlet-triplet(IST)energy gap,where the singlet excited state(S_(1))lies below the triplet excited state(T_(1)),mark a transformative advancement in organic light-emitting diodes(OLEDs)technology.However,designing the potential IST emitters are greatly challenging,and their IST energy gap,arising from double electron excitation,can only be accurately described by time-consuming post-Hartree-Fock(HF)methods,which blocks large-scale high-throughput screening speed.Here,we develop a four-orbital model to elucidate detailly the roles of double excitations in the IST formation,and establish two molecular descriptors(K_(S)and O_(D))based on exchange integral and molecular orbital energy.By these descriptors,we rapidly identify 41 IST candidates out of 3,486 molecules.The descriptors-aided approach achieves a screening success rate of 90%and reduces computational costs by 13 times compared to full post-HF calculations.Importantly,wepredicted a series of excellent non-traditional near-infrared IST emitters from a dataset of 1028 compounds with emission wavelengths ranging from 852.2 to 1002.3 nm,which open new avenues for designing highly efficient near-infrared OLED materials. 展开更多
关键词 molecular descriptors double electron organic light emitting diodes high throughput virtual screening inverted singlet triplet energy gap ist emitters fluorescence emitters fluorescence materials
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