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Duplication and Combination of P-Loop Containing Nucleotide Triphosphate Hydrolases Superfamily 被引量:1
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作者 SANG Jianping GUAN Wei ZOU Xianwu 《Wuhan University Journal of Natural Sciences》 EI CAS 2006年第3期577-580,共4页
In a genome the set of proteins are formed by duplication and combination of domain superfamilies. P-loop containing nucleotide triphosphate (NTP) hydrolases superfamily is massively duplicated and has the most diff... In a genome the set of proteins are formed by duplication and combination of domain superfamilies. P-loop containing nucleotide triphosphate (NTP) hydrolases superfamily is massively duplicated and has the most different partner superfamilies among archaea, bacteria and eukarya, Here, we study the distributions of duplication and combination of p-loop containing NTP hydrolases superfamily in 169 completed genomes. When the total number of domains in a genome is larger, duplication and combination partners of p-loop conraining NTP hydrolases are more. This phenomenon is more obvious in metazoa. The distributions of abundance and corn bination of partners relate to the functions of the protein. Those distributions in metazoa are very different from those in other kingdoms because of complexity of metazoa. Finally the relationship between duplication and combination of p-loop containing NTP hydrolases superfamily in different genomes is described. It fits a power law. 展开更多
关键词 p-loop containing NTP hydrolases COMBINATION DUPLICATION genome
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Science Letters:EHPred: an SVM-based method for epoxide hydrolases recognition and classification 被引量:1
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作者 贾佳 杨亮 张子张 《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》 SCIE CAS CSCD 2006年第1期1-6,共6页
A two-layer method based on support vector machines (SVMs) has been developed to distinguish epoxide hydrolases (EHs) from other enzymes and to classify its subfamilies using its primary protein sequences. SVM classif... A two-layer method based on support vector machines (SVMs) has been developed to distinguish epoxide hydrolases (EHs) from other enzymes and to classify its subfamilies using its primary protein sequences. SVM classifiers were built using three different feature vectors extracted from the primary sequence of EHs: the amino acid composition (AAC), the dipeptide composition (DPC), and the pseudo-amino acid composition (PAAC). Validated by 5-fold cross tests, the first layer SVM clas- sifier can differentiate EHs and non-EHs with an accuracy of 94.2% and has a Matthew’s correlation coefficient (MCC) of 0.84. Using 2-fold cross validation, PAAC-based second layer SVM can further classify EH subfamilies with an overall accuracy of 90.7% and MCC of 0.87 as compared to AAC (80.0%) and DPC (84.9%). A program called EHPred has also been developed to assist readers to recognize EHs and to classify their subfamilies using primary protein sequences with greater accuracy. 展开更多
关键词 Epoxide hydrolases (EHs) Amino acid composition (AAC) Dipeptide composition (DPC) Pseudo-amino acid composition (PAAC) Support vector machines (SVM)
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OBSERVATION ON REGIONAL DIFFERENCES OF SOME DEHYDROGENASES AND HYDROLASES IN RAT EPIDIDYMIS
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作者 Zhang Junhui, Wu Lijun Wu Jingmei +1 位作者 Wu Mingzhang (Shanghai Zo. 2 Medical University) 《中国组织化学与细胞化学杂志》 CAS CSCD 1992年第1期118-125,149-150,共10页
The epididymal epithelia, by secretion, fluid reabsorption and transition, provide a favorable environment for sperm maturation. We observed, with histochemical method, the regional differences of four hydrolases and ... The epididymal epithelia, by secretion, fluid reabsorption and transition, provide a favorable environment for sperm maturation. We observed, with histochemical method, the regional differences of four hydrolases and five dehydrogenases in caput, corpus and cauda of rat epididymis 展开更多
关键词 rat EPIDIDYMIS EPITHELIA in different SEGMENTS SPERMATOZOA in cavity hydrolases DEHYDROGENASES
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Isolation and Identification of an Acidophilic Fungus and Analysis on the Secreted Glycoside Hydrolases
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作者 吕飞龙 李江 +2 位作者 刘亚洁 王剑锋 蔡向鲲 《Agricultural Science & Technology》 CAS 2012年第6期1190-1193,共4页
[Objective] This study aimed to isolate an acidophilic fungus and analyze the acidophilic enzymes secreted by this fungus. [Method] A heterotrophic fungus was isolated from the leaching solution of a uranium ore in Ji... [Objective] This study aimed to isolate an acidophilic fungus and analyze the acidophilic enzymes secreted by this fungus. [Method] A heterotrophic fungus was isolated from the leaching solution of a uranium ore in Jiangxi Province using oligotrophic acid selective medium (pH 2.5), and was named RBS-6. This strain was then identified according to its colony morphology and molecular indicator rDNA-ITS. Finally, the glycoside hydrolases secreted by RBS-6 were analyzed. [Result] This fungus RBS-6 was acidophilic, and grew best at pH4.0. Its rDNA-ITS sequence shared the highest homology (98%) with that of Phialophora sp. CGMCC 3329 (GU 082377). So it was identified as a fungus of Phialophora sp., and was temporarily named as Phialophora sp. RBS-6. It can produce six glycoside hydrolases, in cluding α-galactosidase glucosidase, β-glucosidase, β-mannanase and β-glucanase. All the enzymes were acidophilic, for which the optimum reaction pH was 3.0-4.0. Among them, β-glucanase exhibited the highest activity at pH 3.5 and 50 ℃; in addition, it was heat-stable as 58% of the enzyme activity was remained after incubation at 50 ℃ for 60 min. [Conclusion] The isolated fungus which was identified as an acidophilic member of Phialophora sp., was a new strain producing acidophilic enzymes. This study supplied new data for the research on Phialophora fungi. 展开更多
关键词 Acidophilic fungus Phialophora sp. RBS-6 RDNA-ITS Glycoside hydrolase Enzyme production analysis
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Bacterial UDP-Glucose Hydrolases and P2 Receptor-Mediated Responses to Infection: A Commentary
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作者 Ifor R. Beacham John P. Headrick 《Advances in Infectious Diseases》 2013年第2期100-104,共5页
UDP-glucose hydrolases are a group of relatively little known membrane-bound or periplasmic enzymes found in Salmonella enterica and E. coli. UDP-glucose is an agonist for a specific P2 receptor (P2Y14) found on epith... UDP-glucose hydrolases are a group of relatively little known membrane-bound or periplasmic enzymes found in Salmonella enterica and E. coli. UDP-glucose is an agonist for a specific P2 receptor (P2Y14) found on epithelial cells and cells associated with innate immunity. It is also recognised as a ‘danger signal’. Cells respond to mechanical damage by releasing UDP-glucose which activates P2Y14 to trigger an innate immune response;it is postulated that a similar response to bacterial infection may be protective against infection. However, the UDP-glucose hydrolases may constitute virulence factors able to abrogate this response by degradation of the released UDP-glucose. 展开更多
关键词 UDP-GLUCOSE HYDROLASE P2Y14 Receptor Virulence Factor Salmonella ENTERICA E. coli
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Glycoside hydrolases: effective tools to enhance the bioactivities and improve the properties of food-derived polysaccharides
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作者 Meifen Hu Wenjie Xi +4 位作者 Nuo Chen Xingye Wei Haifeng Liu Jin'ao Duan Ping Xiao 《Food Science and Human Wellness》 2025年第12期4755-4775,共21页
Food-derived polysaccharides are gaining popularity across diverse food applications due to their wideranging bioactivities and distinctive properties.The specific targeting of glycoside hydrolases towards glycosidic ... Food-derived polysaccharides are gaining popularity across diverse food applications due to their wideranging bioactivities and distinctive properties.The specific targeting of glycoside hydrolases towards glycosidic bonds lays the groundwork for synthesizing and exploring specific structural segments of polysaccharides,offering crucial implications in the food industry.However,macromolecular polysaccharides demonstrate limited biological activities as their active centers are tightly enveloped,posing challenges for traversing cell membrane barriers.By selectively cleaving partial glycosidic linkages in polysaccharides,glycoside hydrolases decrease the polymerization of polysaccharide molecules and effectively change the structural characteristics,where a series of smaller polysaccharide fragments can be generated for improving the bioactivities and properties in some respects.This review examines the role of glycoside hydrolases in degrading food-derived polysaccharides,the structure-function relationships,reaction conditions,and the current application status of degraded polysaccharides is discussed in particular.In addition,we also highlight challenges and future directions worth attention in the application of enzymes and polysaccharides.Overall,the present review will provide an efficient method for producing bioactivity-enhanced polysaccharides,which can improve the effectiveness and safety of functional foods to safeguard human wellness. 展开更多
关键词 Glycoside hydrolases Enzymatically degraded polysaccharides Enhanced bioactivity Property improvement
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Landscape profiling method for mining novel PET hydrolases: Advances and industrial implications
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作者 Yi Zheng Tianyuan Su Qingsheng Qi 《Green Carbon》 2025年第4期429-430,共2页
Polyethylene terephthalate(PET),a synthetic polyester that is widely used in packaging,textiles,and bottles,poses a significant environmental challenge because of its resistance to biodegradation.
关键词 MINING novel pet hydrolases polyethylene terephthalate synthetic polyester biodegradation polyethylene terephthalate pet landscape profiling
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Microplastics affect activity and spatial distribution of C,N, and P hydrolases in rice rhizosphere 被引量:2
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作者 Yaoyao Tong Jina Ding +7 位作者 Mouliang Xiao Muhammad Shahbaz Zhenke Zhu Ming Chen Yakov Kuzyakov Yangwu Deng Jianping Chen Tida Ge 《Soil Ecology Letters》 CSCD 2023年第3期13-24,共12页
Microplastics provide a new ecological niche for microorganisms,and the accumulation levels of microplastics(MPs)in terrestrial ecosystems are higher than those in marine ecosystems.Here,we applied the zymography to i... Microplastics provide a new ecological niche for microorganisms,and the accumulation levels of microplastics(MPs)in terrestrial ecosystems are higher than those in marine ecosystems.Here,we applied the zymography to investigate how MPs–polyethylene[PE],and polyvinyl chloride[PVC])at two levels(0.01%and 1%soil weight)impacted the spatial distribution of soil hydrolases,nutrient availability,and rice growth in paddy soil.MPs increased the above-ground biomass by 13.0%–15.5%and decreased the below-ground biomass by 8.0%–15.1%.Addition of 0.01%and 1%MPs reduced soil NH4+content by 18.3%–63.2%and 52.2%–80.2%,respectively.The average activities of N-and P-hydrolases increased by 0.8%–4.8%and 1.9%–6.3%with addition of MPs,respectively.The nutrient uptake by rice plants and the enzyme activities in hotspots increased with MP content in soil.The accumulation of MPs in paddy soil could provide an ecological niche that facilitates microbial survival,alters the spatial distribution of soil hydrolases,and decreases nutrient availability. 展开更多
关键词 MPs accumulation Soil zymography Microbial hotspots Soil nutrients Soil hydrolases
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Machine learning meets enzyme engineering: examples in the design of polyethylene terephthalate hydrolases
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作者 Rohan Ali Yifei Zhang 《Frontiers of Chemical Science and Engineering》 CSCD 2024年第12期105-116,共12页
The trend of employing machine learning methods has been increasing to develop promising biocatalysts.Leveraging the experimental findings and simulation data,these methods facilitate enzyme engineering and even the d... The trend of employing machine learning methods has been increasing to develop promising biocatalysts.Leveraging the experimental findings and simulation data,these methods facilitate enzyme engineering and even the design of new-to-nature enzymes.This review focuses on the application of machine learning methods in the engineering of polyethylene terephthalate(PET)hydrolases,enzymes that have the potential to help address plastic pollution.We introduce an overview of machine learning workflows,useful methods and tools for protein design and engineering,and discuss the recent progress of machine learning-aided PET hydrolase engineering and de novo design of PET hydrolases.Finally,as machine learning in enzyme engineering is still evolving,we foresee that advancements in computational power and quality data resources will considerably increase the use of data-driven approaches in enzyme engineering in the coming decades. 展开更多
关键词 machine learning artificial intelligence enzyme engineering polyethylene terephthalate hydrolase enzyme design
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Effects of nitrogen enrichment on soil enzyme activities in grassland ecosystems in China:A multilevel meta-analysis 被引量:2
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作者 Jibo SHI Muhammad KHASHI U RAHMAN +3 位作者 Ruonan MA Qiang LI Yingxin HUANG Guangdi LI 《Pedosphere》 2025年第1期84-96,共13页
Nitrogen(N)enrichment has resulted in widespread alteration of grassland ecosystem processes and functions mainly through disturbance in soil enzyme activities.However,we lack a comprehensive understanding of how N de... Nitrogen(N)enrichment has resulted in widespread alteration of grassland ecosystem processes and functions mainly through disturbance in soil enzyme activities.However,we lack a comprehensive understanding of how N deposition affects specific key soil enzymes that mediate plant-soil feedback of grassland.Here,with a meta-analysis on 1446 cases from field observations in China,we show that N deposition differently affects soil enzymes associated with soil biochemical processes.Specifically,N-promoted C,N,and P-acquiring hydrolase activities significantly increased by 8.73%,7.67%,and 8.69%,respectively,related to an increase in microbial-specific enzyme secretion.The increased relative N availability and soil acidification were two potential mechanisms accounting for the changes in soil enzyme activities with N enrichment.The mixed N addition in combination of NH_(4)NO_(3) and urea showed greater stimulation effect on soil enzyme activities.However,the high rate and long-term N addition tended to weaken the positive responses of soil C-,Nand P-acquiring hydrolase activities to N enrichment.Spatially increased mean annual precipitation and temperature primarily promoted the positive effects of N enrichment on N-and P-acquiring hydrolase activities,and the stimulation of C-and N-acquiring hydrolase activities by N enrichment was intensified with the increase in soil depth.Finally,multimodal inference showed that grassland type was the most important regulator of responses of microbial C,N,and P-acquiring hydrolase activities to N enrichment.This meta-analysis provides a comprehensive insight into understanding the key role of N enrichment in shaping soil enzyme activities of grassland ecosystems. 展开更多
关键词 C N and P-acquiring hydrolases grassland type model selection N addition OXIDASE soil acidification
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Analysis on Tissue-specific Expression of Dp XTH1 and Dp XTH2 Genes in Dahlia 被引量:1
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作者 张萍萍 王蕾 +4 位作者 陈驰 王利芬 郑必平 钱力鑫 谈建中 《Agricultural Science & Technology》 CAS 2015年第8期1596-1599,共4页
[Objective] This study aimed to investigate the functions and related mechanisms of xyloglucan Endotransglycosylase/hydrolases (XTHs) during the growth and development of dahlia. [Method] Using /3-actin as the refer... [Objective] This study aimed to investigate the functions and related mechanisms of xyloglucan Endotransglycosylase/hydrolases (XTHs) during the growth and development of dahlia. [Method] Using /3-actin as the reference gene, the rela- tive transcription levels of DpXTH1 and DpXTH2 genes in roots, stems, leaves and petals of dahlia were analyzed by real-time RT-PCR. [Result] The DpXTH1 and DpXTH2 were not expressed in the roots, but expressed abundantly in the petals of dahlia. There were little expressions in the stems and leaves of dahlia. [Conclusion] The DpXTH1 and DpXTH2 were petal-specific genes and closely related to the growth and development of petals in dahlia. 展开更多
关键词 DAHLIA Xyloglucan endotransglycosylase/hydrolases XTH gene Expres-sion specificity Real-time fluorescence quantitative PCR
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The glycoside hydrolase 7 member VdGH7a regulates Verticillium dahliae pathogenicity and induces host defenses by interacting with GhOLP1
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作者 Junyuan Lü Shichao Liu +7 位作者 Jinglong Zhou Zili Feng Feng Wei Lihong Zhao Haiqiang Li Heqin Zhu Yalin Zhang Hongjie Feng 《Journal of Integrative Agriculture》 2025年第11期4294-4309,共16页
Plant pathogens secrete various cell wall-degrading enzymes that compromise host cell wall integrity and facilitate pathogen invasion.This study identified VdGH7a,a glycoside hydrolase family 7(GH7)cellobiohydrolase f... Plant pathogens secrete various cell wall-degrading enzymes that compromise host cell wall integrity and facilitate pathogen invasion.This study identified VdGH7a,a glycoside hydrolase family 7(GH7)cellobiohydrolase from Verticillium dahliae,which demonstrated hydrolytic activity against 1,4-β-glucan.Notably,VdGH7a induced cell death in Nicotiana benthamiana when signal peptides were present,though this effect was inhibited by the carbohydrate-binding type-1(CBM1)protein domain.The deletion of VdGH7a substantially reduced V.dahliae pathogenicity in cotton plants,as demonstrated by the mutants’inability to penetrate cellophane membrane.These knockout mutants also exhibited reduced carbon source utilization capacity and increased sensitivity to osmotic and cell wall stresses.Through yeast two-hybrid screening,bi-molecular fluorescence complementation(BiFC),and luciferase complementation imaging(LCI),we identified that VdGH7a interacts with an osmotin-like protein(GhOLP1)in cotton.Virus-induced gene silencing of GhOLP1 resulted in decreased salicylic acid(SA)content and reduced resistance to V.dahliae in cotton,while heterologous overexpression of GhOLP1 in Arabidopsis enhanced both resistance and SA signaling pathway gene expression.These results reveal a virulence mechanism wherein the secreted protein VdGH7a from V.dahliae interacts with GhOLP1 to activate host immunity and contribute significantly to plant resistance against V.dahliae. 展开更多
关键词 Verticillium dahliae glycoside hydrolase PATHOGENICITY INTERACT host immunity
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Discovery of soluble epoxide hydrolase inhibitors based on the skeleton of piperine:synthesis,properties,molecular dynamics simulation,and their potentials in acute lung injury
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作者 Juan Zhang Xue-Tao Yang +5 位作者 Min Zhang Qi-Meng Zhu Da-Hong Yao Xiao-Chi Ma Bruce D.Hammock Cheng-Peng Sun 《Acupuncture and Herbal Medicine》 2025年第2期193-204,共12页
Objective:Soluble epoxide hydrolase(sEH)emerges as a target of interest for inflammatory diseases.Piperine is a natural amide alkaloid from Piper nigrum and displays an inhibitory effect toward sEH,its chemical struct... Objective:Soluble epoxide hydrolase(sEH)emerges as a target of interest for inflammatory diseases.Piperine is a natural amide alkaloid from Piper nigrum and displays an inhibitory effect toward sEH,its chemical structural transformation was carried out in order to obtain a library of sEH inhibitors based on its skeleton.Methods:Structural transformation of piperine was carried out by chemical methods,and piperine derivatives were assayed for their sEH potentials.A mouse acute lung injury model was constructed by lipopolysaccharide(LPS).Hematoxylin and eosin(H&E)staining,immunofluorescence staining,Western Blot,and enzyme-linked immunosorbent assay were used for investigating the protective potential of sEH inhibitor 11h.Results:Piperine derivatives 11e,11h,11j,and 11o showed inhibitory potentials toward sEH with values of half maximal inhibitory concentration(IC50)from 20 to 70 nM.Compound 11h attenuated the pathological course of LPS-mediated acute lung injury(ALI)in vivo.Furthermore,levels of cytokines tumor necrosis factor alpha(TNF-α),interleukin 6(IL-6),myeloperoxidase(MPO),and lactate dehydrogenase(LDH)were decreased after administration of 11h.The LPS-mediated inflammation and redox unbalance,including expressions of cyclooxygenase-2(COX-2),heme oxygenase-1(HO-1),intercellular cell adhesion molecule-1(ICAM-1),vascular cell adhesion molecule-1(VCAM-1),p-p65/p65,glutamate-cysteine ligase modifier subunit(GCLM),and nuclear factor erythroid-2-related factor 2(Nrf2),were ameliorated through nuclear factor kappa B(NF-κB)and Nrf2 pathways via enhancing levels of epoxyeicosatrienoic acids(EETs)in LPS-exposed ALI mice after compound 11h treatment.Molecular docking demonstrated that the aromatic unsaturated group of 11h occupied a hydrophobic pocket and its urea group formed three hydrogen bonds with Asp333,Tyr381,and Tyr465,which stabilized the active conformation of the ligand.Conclusions:These findings demonstrated that compound 11h may serve as a lead compound for developing sEH inhibitors and treating inflammation related to diseases,such as ALI. 展开更多
关键词 Inflammation PIPERINE Soluble epoxide hydrolase Structure-activity relationship
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Intestinal microbiota composition and bile salt hydrolase activity in fast and slow growing broiler chickens:implications for growth performance and production efficiency
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作者 Hye Won Kim Na Kyung Kim +6 位作者 Patricia G.Wolf Kristoffer Brandvold Joshua M.Rehberger Tom G.Rehberger Ryan N.Dilger Alexandra H.Smith Roderick I.Mackie 《Journal of Animal Science and Biotechnology》 2025年第6期2751-2767,共17页
Background Body weight is an important indicator of the overall health and production efficiency in broiler chickens.In broiler houses,body weight of chicks is variable despite the same genetics,hatching and feeding p... Background Body weight is an important indicator of the overall health and production efficiency in broiler chickens.In broiler houses,body weight of chicks is variable despite the same genetics,hatching and feeding practices within a production system.The objective of this study was to investigate the intestinal microbiota and bile salt hydrolase(BSH)activity in slow and fast growing broiler chickens,which belonged to the 10th and 90th percentile body weight groups,respectively.Methods A total of 300 Ross 308 broiler chickens(100 per cohort from three independent cohorts)were selected and mucosal samples from the jejunum,ileum,and cecum were collected at day of arrival,11 and 25(n=450).Then,bacterial counts,16S rRNA amplicon sequencing,species specific real-time qPCR,as well as BSH activity were analyzed.Results Results of bacterial counts showed no significant difference between slow and fast growing cohorts(P>0.05),but they tended to be higher in the slow growing chickens in all measured bacterial groups in cecum.The 16S rRNA amplicon sequencing revealed higher relative abundance of E.coli-Shigella(71.3%−79.8%)at day of arrival,while the most abundant microorganisms at d 25 was Candidatus Arthromitus(slow:44.5%;fast:27.4%)in small intestine.qPCR results indicated significant differences in bacterial populations between the slow and fast growing chickens,especially higher total bacteria,Enterococcus,and Clostridium cluster I in the slow growing chickens at d 25.BSH activity was higher in the slow growing chickens than the fast growing chickens[slow:0.476ΔOD/protein(μg/mL);fast:0.258ΔOD/protein(μg/mL);P<0.0001],and correlation analysis highlighted associations between BSH activity,body weight,feed intake,body weight gain,and bacterial counts.Conclusions We postulate that high total bacteria and Enterococcus abundance are associated with high BSH activity,impacting low feed intake and body weight gain,ultimately resulting in separation into slow and fast growing birds.The findings of this study contribute to understanding the relationship between gut microbiota,BSH activity,and host physiology in broiler chickens,with potential implications for poultry production. 展开更多
关键词 Bile salt hydrolase activity Broiler chickens Fast growing Gut microbiota Slow growing
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Distribution of Soil Enzyme Activities and Microbial Biomass Along a Latitudinal Gradient in Farmlands of Songliao Plain,Northeast China 被引量:26
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作者 LIU Xiu-Mei LI Qi +1 位作者 LIANG Wen-Ju JIANG Yong 《Pedosphere》 SCIE CAS CSCD 2008年第4期431-440,共10页
Soil enzymes activities and microbial biomass have an important influence on nutrient cycling. The spatial distribution of soil enzymes activities and microbial biomass were examined along a latitudinal gradient in fa... Soil enzymes activities and microbial biomass have an important influence on nutrient cycling. The spatial distribution of soil enzymes activities and microbial biomass were examined along a latitudinal gradient in farmlands of Songliao Plain, Northeast China to assess the impact of climatic changes along the latitudinal transect on nutrient cycling in agroecosystems. Top soils (0-20 cm depth) were sampled in fields at 7 locations from north (Hallun) to south (Dashiqiao) in the end of October 2005 after maize harvest. The contents of total C, N, and P, C/N, available N, and available P increased with the latitude. The activities of invertase and acid phosphatase, microbial biomass (MB) C and N, and MBC/MBN were significantly correlated with latitude (P 〈 0.05, r^2 = 0.198, 0.635, 0.558, 0.211 and 0.317, respectively), that is, increasing with the latitude. Significant positive correlations (P 〈 0.05) were observed between invertase activity and the total N and available P, and between acid phosphatase activity and the total C, C/N, available N, total P and available P. The urease, acid phosphatase, and dehydrogenase activities were significantly correlated with the soil pH and electrical conductivity (EC) (P 〈 0.05). MBC and MBN were positively correlated with the total C, C/N, and available P (P 〈 0.05). The MBC/MBN ratio was positively correlated with the total C, total N, C/N, and available N (P 〈 0.05). The spatial distribution of soil enzyme activities and microbial biomass resulted from the changes in soil properties such as soil organic matter, soil pH, and EC, partially owing to variations in temperature and rainfall along the latitudinal gradient. 展开更多
关键词 farmlands hydrolases latitudinal gradient microbial biomass soil organic matter
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hOGG1 Ser326Cys polymorphism modifies the significance of the environmental risk factor for colon cancer 被引量:19
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作者 Jae-Il Kim Young-Jin Park +5 位作者 Ki-Hong Kim Ji-Il Kim Byung-Joo Song Meung-Soo Lee Chul-Num Kim Seok-Hyo Chang 《World Journal of Gastroenterology》 SCIE CAS CSCD 2003年第5期956-960,共5页
AIM:To determine the association of hOGG1 (8-oxoguanine glycosylase I,OGG1) polymorphism of Ser326Cys substitution with colon cancer risk and possible interaction with known environmental risk factors. METHODS:A case-... AIM:To determine the association of hOGG1 (8-oxoguanine glycosylase I,OGG1) polymorphism of Ser326Cys substitution with colon cancer risk and possible interaction with known environmental risk factors. METHODS:A case-control study with 125 colon cancer cases and 247 controls was conducted, RESULTS:There was no major difference in Ser326Cys genotype distribution between cases and controls.The meat intake tended to increase the odds ratio for colon cancer with an OR of 1.72 (95 % confidence interval;CI=1.12-2.76). Such tendency was more prominent in Cys/Cys carriers (OR=4.31,95 % CI=1.64-11.48),but meat intake was not a significant risk factor for colon cancer in Ser/Ser or Ser/ Cys carriers.The OR for colon cancer was elevated with marginal significance in smokers who were Cys/Cys carriers (OR=2.75,95 % CI=1.07-7.53) but not in Ser/Ser or Ser/ Cys carriers. CONCLUSION:These results suggest that the hOGG1 Ser326Cys polymorphism is probably not a major contributor to individual colon cancer susceptibility overall,but the Cys/ Cys genotype may alter the impact of some environmental factors on colon cancer development. 展开更多
关键词 Base Sequence Case-Control Studies Colonic Neoplasms DNA DNA-Formamidopyrimidine Glycosylase Diet Female Genotype Humans Male MEAT Middle Aged N-Glycosyl hydrolases Odds Ratio Polymorphism Genetic Risk Factors SMOKING
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Arylsulfatase,β-galactosidase and lysozyme in gastric cancer cells and its relationship to invasion 被引量:5
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作者 YI YongFen and HUANG YouRong 《World Journal of Gastroenterology》 SCIE CAS CSCD 1998年第1期57-59,共3页
IM To study the distribution of arylsulfatase, βgalactosidase and lysozyme in gastric cancer cells, and its relationship to differentiation and invasion of gastric cancer cells.METHODS Histochemical, immunohistoc... IM To study the distribution of arylsulfatase, βgalactosidase and lysozyme in gastric cancer cells, and its relationship to differentiation and invasion of gastric cancer cells.METHODS Histochemical, immunohistochemical and ruthenium red (RR) electrocytochemical technique for three types of hydrolases and proteoglycans in pericancerous matrix in 33 cases of gastric cancer were observed under light and electron microscopy.RESULTS The expression intensities of arylsulfatase, βglactosidase and lysozyme in mucinous cell carcinomas were more intensive than those in welldifferentiated and poorlydifferentiated adenocarcinomas (P<005-001). The fibrous tissues smooth muscle and proteoglycans close to the cancer cells were degraded. They were found in the region far from the cancer cells. Expression of three enzymes mentioned above was low in adenocarcinoma cells, and fibrous tissues and RR granules were present and intact near the welldifferentiated and poorly differentiated adenocarcinoma cells.CONCLUSION Mucinous cell carcinoma may release various hydrolases into extracellular matrix, inducing degradation of pericancerous matrix and facilitating cancer cell invasion and metastasis.. 展开更多
关键词 tomach neoplasms hydrolases PROTEOGLYCANS HISTOCHEMISTRY neoplasm invasiveness ARYLSULFATASE betagalactosidase MURAMIDASE
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CYP1A1,CYP2E1 and EPHX1 polymorphisms in sporadic colorectal neoplasms 被引量:3
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作者 Glaucia Maria M Fernandes Anelise Russo +7 位作者 Marcela Alcantara Proenca Nathalia Fernanda Gazola Gabriela Helena Rodrigues Patrícia Matos Biselli-Chicote Ana Elizabete Silva Joao Gomes Netinho érika Cristina Pavarino Eny Maria Goloni-Bertollo 《World Journal of Gastroenterology》 SCIE CAS 2016年第45期9974-9983,共10页
AIM To investigate the contribution of polymorphisms in the CYP1A1, CYP2E1 and EPHX1 genes on sporadic colorectal cancer(SCRC) risk. METHODS Six hundred forty-one individuals(227 patients with SCRC and 400 controls) w... AIM To investigate the contribution of polymorphisms in the CYP1A1, CYP2E1 and EPHX1 genes on sporadic colorectal cancer(SCRC) risk. METHODS Six hundred forty-one individuals(227 patients with SCRC and 400 controls) were enrolled in the study. The variables analyzed were age, gender, tobacco and alcohol consumption, and clinical and histopathological tumor parameters. The CYP1A1 *2A, CYP1A1 *2C CYP2E1 *5B and CYP2E1 *6 polymorphisms were analyzed by polymerase chain reaction-restriction fragment length polymorphism(PCR-RFLP). The EPHX1 Tyr113 His, EPHX1 His139 Arg and CYP1A1 *2C polymorphisms were detected by real-time PCR. Chisquared test and binary logistic regression were used in the statistical analysis. Haplotype analysis was conducted using the Haploview program, version 2.05.RESULTS Age over 6 2 years was a risk factor for SCRC development(OR = 7.54, 95%CI: 4.94-11.50, P < 0.01). Male individuals were less susceptible to SCRC(OR = 0.55, 95%CI: 0.35-0.85, P < 0.01). The CYP2E1*5B polymorphism was associated with SCRC in the codominant(heterozygous genotype: OR = 2.66, 95%CI: 1.64-4.32, P < 0.01), dominant(OR = 2.82, 95%CI: 1.74-4.55, P < 0.01), overdominant(OR = 2.58, 95%CI: 1.59-4.19, P < 0.01), and log-additive models(OR = 2.84, 95%CI: 1.78-4.52, P < 0.01). The CYP2E1*6 polymorphism was associated with an increased SCRC risk in codominant(heterozygous genotype: OR = 2.81, 95%CI: 1.84-4.28, P < 0.01; homozygous polymorphic : OR = 7. 3 2, 9 5 % C I : 1.85-28.96, P < 0.01), dominant(OR = 2.97, 95%CI: 1.97-4.50, P < 0.01), recessive(OR = 5.26, 95%CI: 1.35-20.50, P = 0.016), overdominant(OR = 2.64, 95%CI: 1.74-4.01, P < 0.01), and log-additive models(OR = 2.78, 95%CI: 1.91-4.06, P < 0.01). The haplotype formed by the minor alleles of the CYP2E1*5B(C) and CYP2E1*6(A) polymorphisms was associated with SCRC(P = 0.002). However, the CYP1A1 *2A, CYP1A1 *2C, EPHX1 Tyr113 His and EPHX1 His139 Arg polymorphisms were not associated with SCRC.CONCLUSION In conclusion, the results demonstrated that CYP2E1*5B and CYP2E1*6 minor alleles play a role in the development of SCRC. 展开更多
关键词 Single-nucleotide polymorphisms Colorectal neoplasms Cytochrome P-450 CYP2E1 Cytochrome P-450 CYP1A1 Epoxide hydrolases 1
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New possibility for PET plastic recycling by a tailored hydrolytic enzyme 被引量:2
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作者 Shijie Yu Qinghai Li +1 位作者 Yanguo Zhang Hui Zhou 《Green Energy & Environment》 SCIE EI CAS CSCD 2024年第2期163-165,共3页
Plastic waste puts a huge burden on the ecosystem due to the current lack of mature recycling technology.Poly(ethylene terephthalate)(PET)is one of the most produced plastics in the world.Enzymatic decomposition holds... Plastic waste puts a huge burden on the ecosystem due to the current lack of mature recycling technology.Poly(ethylene terephthalate)(PET)is one of the most produced plastics in the world.Enzymatic decomposition holds the promise of recovering monomers from PET plastic,and the monomers can be used to regenerate new PET products.However,there are still limitations in the activity and thermal stability of the existing PET hydrolases.The recent study by Lu et al.introduced a novel PET hydrolase via machine learning-aided engineering.The obtained PET hydrolase showed excellent activity and thermal stability in the hydrolysis of PET and is capable of directly degrading large amounts of postconsumer PET products.This approach provides an effective method for recycling PET waste and is expected to improve the current state of plastic pollution worldwide. 展开更多
关键词 Plastic waste Poly(ethylene terephthalate) HYDROLYSIS Machine learning Enzymatic depolymerization hydrolases
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EPHX1 A415G基因多态性与胃肠道肿瘤易感性的Meta分析
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作者 王东风 刘伟 +4 位作者 张冬 许发培 仲坚 姚成云 孙静锋 《临床肿瘤学杂志》 CAS 2014年第4期329-333,共5页
目的:探讨微粒体环氧化物水解酶( EPHX1) A415G基因多态性与胃肠道肿瘤易感性的关系。方法计算机检索PubMed、EMBASE、CBM、维普、万方及中国知网数据库,检索时间截至2013年5月,收集关于EPHX1 A415G基因多态性与胃肠道肿瘤易感性... 目的:探讨微粒体环氧化物水解酶( EPHX1) A415G基因多态性与胃肠道肿瘤易感性的关系。方法计算机检索PubMed、EMBASE、CBM、维普、万方及中国知网数据库,检索时间截至2013年5月,收集关于EPHX1 A415G基因多态性与胃肠道肿瘤易感性的研究。由2名评价者按照纳入和排除标准独立选择文献、提取资料、评价质量。采用STATA 11.0软件进行Meta分析,计算合并OR值及其95%CI并行敏感性分析和发表偏倚的评估。结果最终纳入18篇文献,包括5852例胃肠道肿瘤患者和8710例对照人群。纳入的结果在GG vs. AA、GA vs. AA、GG/GA vs. AA和GG vs. GA/AA基因型的比较模型中均无异质性。各遗传模型Meta分析结果显示,EPHX1 A415G基因多态性与胃肠道肿瘤遗传易感性的关联性无统计学意义[GG vs. AA:OR=1.063,95%CI:0.888~1.273;GA vs. AA: OR=0.935,95%CI:0.867~1.009;GG/GA vs. AA: OR=0.948,95%CI:0.882~1.020;GG vs. GA/AA:OR=1.091,95%CI:0.913~1.304]。结论 EPHX1 A415G基因多态性与胃肠道肿瘤易感性之间无明显相关性。 展开更多
关键词 微粒体环氧化物水解酶 基因多态性 胃肠道肿瘤 META分析 Microsomal EPOXIDE HYDROLASE 1
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