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FinnGen数据库介绍与数据提取方法
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作者 许奕娴 田国祥 +6 位作者 郑炘凯 沈思 叶新苗 卢浩 李媛洁 吕军 王昊 《中国循证心血管医学杂志》 2024年第5期529-532,共4页
FinnGen研究项目是一个规模庞大的遗传学研究计划,自2017年起,致力于通过分析芬兰人群的遗传数据及其与国家级电子医疗记录之间的关联,以深化对人类健康的理解。该项目计划收集约500,000个样本,占据芬兰总人口的10%。FinnGen利用国家级... FinnGen研究项目是一个规模庞大的遗传学研究计划,自2017年起,致力于通过分析芬兰人群的遗传数据及其与国家级电子医疗记录之间的关联,以深化对人类健康的理解。该项目计划收集约500,000个样本,占据芬兰总人口的10%。FinnGen利用国家级生物银行收集样本,并与众多健康机构、大学、医疗机构、生物银行及国际制药公司展开合作。本研究详细介绍了用户如何在FinnGen平台上下载和利用数据,目的在于促进学术交流和沟通,为科研工作者提供更高质量的科研数据来源。 展开更多
关键词 finngen数据库 全基因组关联研究 纵向研究 下载数据
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可成药全基因组预测腰椎椎管狭窄症治疗靶基因:DgiDB与Finn数据库数据分析
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作者 李涵玉 王超逸 +4 位作者 杨敬言 黄仁俊 赵余炀 郝华焘 于栋 《中国组织工程研究》 北大核心 2026年第12期3171-3181,共11页
背景:腰椎椎管狭窄症是一种常见且严重的退行性脊柱疾病,目前相关的治疗和预防仍具有一定的局限性,筛选腰椎椎管狭窄症的治疗靶基因、探索药物更广泛的应用范围、明确药物的作用机制有着重要的临床意义。目的:通过可成药全基因组的孟德... 背景:腰椎椎管狭窄症是一种常见且严重的退行性脊柱疾病,目前相关的治疗和预防仍具有一定的局限性,筛选腰椎椎管狭窄症的治疗靶基因、探索药物更广泛的应用范围、明确药物的作用机制有着重要的临床意义。目的:通过可成药全基因组的孟德尔随机化分析探讨腰椎椎管狭窄症的潜在治疗靶点。方法:使用收录了50万名芬兰人的基因组和健康信息的芬兰数据库、eQTLGen联盟、药物特征数据库、药物-基因相互作用数据库、蛋白互作数据库、有机小分子生物活性数据库及蛋白质结构数据库,将可成药基因的数据与腰椎椎管狭窄症全基因组关联研究数据进行双样本孟德尔随机化分析和共定位分析,以确定与腰椎椎管狭窄症高度相关的基因。此外,还进行了基因本体论与京都基因与基因组百科全书富集分析、蛋白质网络构建、药物预测和分子对接,为开发更有效、更有针对性的治疗药物提供了有价值的指导。结果与结论:(1)确定了32个与腰椎椎管狭窄症显著相关的可成药基因,其中CCDC77通过孟德尔随机化和共定位分析表现出与腰椎椎管狭窄症结果共享遗传效应的证据;(2)而差异基因主要参与细胞运动的正向调节、血管生成、适应性免疫应答等生物过程,上调基因主要富集在细胞黏附分子通路、缺氧诱导因子1信号通路、白细胞跨内皮迁移信号通路等作用途径;(3)药物富集结果显示大黄素及前列腺素E2为有潜力的治疗腰椎椎管狭窄症的药物;(4)这些发现可为针对腰椎椎管狭窄症的治疗提供有希望的线索,为药物研发提供新的方向,促进基础与临床研究结合,为国内相关领域的研究提供了参考。 展开更多
关键词 腰椎椎管狭窄症 孟德尔随机化 DgiDB数据库 可成药基因 Finn数据库 大黄素 前列腺素E2
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年龄相关性黄斑变性与深静脉血栓形成:全基因组关联数据分析
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作者 刘鸿涛 武欣 +3 位作者 姜鑫雨 沙斐 安琪 李高彪 《中国组织工程研究》 北大核心 2026年第6期1602-1608,共7页
背景:年龄相关性黄斑变性和深静脉血栓形成可能存在共同的病理生理机制,但缺乏直接关系证据,传统研究受混杂因素和反向因果干扰。目的:基于孟德尔随机化设计方法探讨年龄相关性黄斑变性与深静脉血栓形成的因果关系。方法:通过双向两样... 背景:年龄相关性黄斑变性和深静脉血栓形成可能存在共同的病理生理机制,但缺乏直接关系证据,传统研究受混杂因素和反向因果干扰。目的:基于孟德尔随机化设计方法探讨年龄相关性黄斑变性与深静脉血栓形成的因果关系。方法:通过双向两样本孟德尔随机化分析,使用公开的全基因组关联研究获取暴露与结局的单核苷酸多态性,其中从FinnGen数据库获取深静脉血栓形成数据,样本为欧洲人群,样本量为363612例,单核苷酸多态性数量为1048575个;从IEU OpenGWAS项目获取年龄相关性黄斑变性数据,样本为欧洲人群,样本量为105248例,单核苷酸多态性数量为11304110个。使用R 4.4.1软件Two Sample MR包(版本号:0.6.8),采用逆方差加权法评估暴露因素对结局的因果效应,以MR-Egger回归法、加权中位数法、加权模式法和简单模式法进行敏感性分析评估结果的稳健性;使用“heterogeneity”函数进行异质性检验,使用“horizontal pleiotropy”函数和MR-PRESSO评估水平多效性。采用Cochran’s Q检验判断单核苷酸多态性间是否存在统计学异质性,运用留一法分析单个单核苷酸多态性是否对孟德尔随机化分析结果产生过度影响,绘制漏斗图评估单核苷酸多态性的潜在偏倚,绘制森林图展示单核苷酸多态性对暴露和结果的效应估计以及它们的置信区间,绘制散点图评估单核苷酸多态性的效力与它们对结果估计的因果效应大小之间的关系。结果与结论:正向研究和反向研究均表明年龄相关性黄斑变性与深静脉血栓形成之间没有因果关联(P>0.05)。敏感性分析确证结果可靠稳健,无离群值、异质性和水平多效性,单个单核苷酸多态性未明显影响总体效应估计值。虽基于欧洲人群数据,但对中国生物医学探究复杂疾病关联有方法学借鉴价值。未来应开展多中心大样本研究,精准解析中国人群相关疾病内在联系,为防治策略与临床实践提供依据。 展开更多
关键词 年龄相关性黄斑变性 深静脉血栓形成 孟德尔随机化 因果关联 全基因组关联数据 芬兰数据库 欧洲人群
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Causal relationships between gut microbiota and dementia:A twosample,bidirectional,Mendelian randomization study
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作者 Zhao-Lin Ren Hai-Hong Zhou +3 位作者 Chu-Pei Chen Hao He Duo-Lao Wang Zhou Liu 《World Journal of Clinical Cases》 SCIE 2024年第16期2780-2788,共9页
BACKGROUND Existing evidence suggests that gut microbiota represent a significant environmental risk factor for various forms of dementia,including Alzheimer's dementia,vascular dementia,and dementia in other dise... BACKGROUND Existing evidence suggests that gut microbiota represent a significant environmental risk factor for various forms of dementia,including Alzheimer's dementia,vascular dementia,and dementia in other diseases classified elsewhere.However,the exact causal relationships between gut microbiota and the different forms of dementia or their subtypes remain unclear.AIM To investigate putative causal relationships between gut microbiota and dementia or its subtypes using Mendelian randomization(MR)analysis.METHODS A bidirectional,two-sample,MR analysis was conducted utilizing publicly available gut microbiota-related genome-wide association study(GWAS)summary data from the MiBioGen consortium alongside GWAS summary statistics for dementia and its subtypes from the FinnGen consortium.Instrumental variables were selected according to the fundamental tenets of MR and their strengths were evaluated using the F-statistic.Five MR methods were employed,and the robustness of our findings was validated.To account for multiple comparisons,we applied the Bonferroni method for P-value adjustment.RESULTS We identified several gut microbiota taxa exhibiting putative causal relationships with dementia or its subtypes,potentially serving as risk or protective factors for the disease.In addition,reverse MR analysis indicated that the relative abundance of several gut microbiota taxa might be influenced by dementia or its subtypes.An exhaustive sensitivity analysis confirmed the absence of heterogeneity and horizontal pleiotropy.After applying correction for multiple testing,we observed that the order Bacillales(odds ratio:0.830,95%confidence interval:0.740-0.932,P=0.00155,Padjust=0.0311)exhibited a strong association with Alzheimer’s disease-related dementia.CONCLUSION The results suggest that gut microbiota is causally associated with dementia.Our findings provide novel insights into the pathophysiology of dementia and have important implications for its treatment and prevention. 展开更多
关键词 Mendelian randomization finngen MiBioGen Gut microbiota DEMENTIA Alzheimer’s disease Vascular dementia
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Causal Associations Between the Gut Microbiome and Aortic Aneurysm:A Mendelian Randomization Study
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作者 Yan Lv Dexin Shen +4 位作者 Ge Zhang Bo Wang Haiyu Wang Jinying Zhang Junnan Tang 《Cardiovascular Innovations and Applications》 2024年第1期484-495,共12页
Background:Observational studies have indicated an association between the gut microbiota and the occurrence and progression of aortic aneurysm(AA).However,the causal relationship between the gut microbiota and AA and... Background:Observational studies have indicated an association between the gut microbiota and the occurrence and progression of aortic aneurysm(AA).However,the causal relationship between the gut microbiota and AA and its subtypes remains unclear.This study used Mendelian randomization(MR)to gain new insights into the relationship between the gut microbiota and AA,including AA subtypes.Methods:We used summary data from a genome-wide association study of gut microbiota to determine genetically predicted microbial taxa.Additionally,we predicted causal relationships between the gut microbiota and AA,including AA subtypes.MR was conducted with two-sample MR with the inverse variance weighting,MR-Egger,weighted median,and weighted mode methods to assess the causal relationships.Heterogeneity and pleiotropy were evaluated with the MR-Egger method,Cochran’s Q test,and the MR-PRESSO Global test.The strength of the causal relationships between exposures and outcomes was assessed with Bonferroni correction.The stability of the MR results was evaluated with leave-one-out analyses.Reverse MR analysis was also performed to examine reverse causality.Results:Through MR analysis,after Bonferroni correction,specific microbial taxa were found to have a causal relationship in AA and its subtypes.Specifically,the phylum Lentisphaerae(OR=0.82,P=0.001),class Lentisphaeria(OR=0.81,P=0.0028),and family Bifidobacteriaceae(OR=0.79,P<0.001)were negatively associated with AA risk,whereas the genus Family XIII UCG001(OR=1.33,P<0.001)was positively associated with AA risk.Regarding subtypes,elevated levels of the genus Bilophila(OR=1.36,P<0.001)were closely associated with abdominal aortic aneurysm(AAA)occurrence.Lower levels of the family Bifidobacteriaceae(OR=0.71,P<0.001)and phylum Lentisphaerae(OR=0.81,P=0.0025),and higher levels of the genus Ruminococcaceae UCG014(OR=1.30,P<0.001)exhibited strong causal relationships with thoracic aortic aneurysm(TAA).Conclusion:Our study suggests that specific components of the gut microbiota have causal effects,either beneficial or detrimental,on AA risk,thus providing potentially valuable biomarkers for early diagnosis and potential therapeutic targets. 展开更多
关键词 aortic aneurysm gut microbiome Mendelian randomization finngen
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Future risk of falls induced by ankle-foot sprains history:An observational and mendelian randomization study
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作者 Xiao'ao Xue Weichu Tao +9 位作者 Qianru Li Yi Li Yiran Wang Le Yu Xicheng Gu Tian Xia Rong Lu Ru Wang He Wang Yinghui Hua 《Sports Medicine and Health Science》 2025年第3期214-223,共10页
Background:Ankle-foot sprains are the most common musculoskeletal injuries,which can impair balance and theoretically increase the risk of falls,but still,there is a lack of evidence supporting the direct association ... Background:Ankle-foot sprains are the most common musculoskeletal injuries,which can impair balance and theoretically increase the risk of falls,but still,there is a lack of evidence supporting the direct association between ankle-foot sprains and the future risk of falls.Methods:UK Biobank cohort was utilized to measure the association between ankle-foot sprains and fall risk with covariates adjusted.Then,the two-sample Mendelian randomization(MR)analysis was applied based on the genetically predicated ankle-foot sprains from FinnGen to validate causal relationship.Finally,genetically predicated cerebellar neuroimaging features were used to explore the mediating role of maladaptive neuroplasticity between ankle-foot sprains and falls by two-step MR analyses.Results:Patients with ankle-foot sprains history exhibited a slightly increased risk of falls than the matched controls before and after adjustment for covariates(odd ratio[OR]ranged from 1.632 to 1.658).Two-sample MR analysis showed that ankle-foot sprains led to a higher risk of falls(OR=1.036)and a lower fractional anisotropy of superior cerebellar peduncle(SCP)(left,β=0.052;right,β=0.053).A trend of mediating effect was observed for the fractional anisotropy of right SCP in the causal effects of ankle-foot sprains on falls(β=0.003).Conclusion:The history of ankle-foot sprains is associated with a slightly increased risk of falls.These findings improve our understanding of the clinical consequences of ankle-foot sprains in terms of fall risk and suggest the importance of adopting more efficient strategies for managing residual functional deficits after the injuries. 展开更多
关键词 Leg injuries Accidental falls Postural balance Mendelian randomization analysis UK biobank finngen
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