It is known that long non-coding RNAs(lncRNAs)play vital roles in biological processes and contribute to the progression,development,and treatment of various diseases.Obviously,understanding associations between disea...It is known that long non-coding RNAs(lncRNAs)play vital roles in biological processes and contribute to the progression,development,and treatment of various diseases.Obviously,understanding associations between diseases and lncRNAs significantly enhances our ability to interpret disease mechanisms.Nevertheless,the process of determining lncRNA-disease associations is costly,labor-intensive,and time-consuming.Hence,it is expected to foster computational strategies to uncover lncRNA-disease relationships for further verification to save time and resources.In this study,a collaborative filtering and graph attention network-based LncRNA-Disease Association(CFGANLDA)method was nominated to expose potential lncRNA-disease associations.First,it takes into account the advantages of using biological information from multiple sources.Next,it uses a collaborative filtering technique in order to address the sparse data problem.It also employs a graph attention network to reinforce both linear and non-linear features of the associations to advance prediction performance.The computational results indicate that CFGANLDA gains better prediction performance compared to other state-of-the-art approaches.The CFGANLDA’s area under the receiver operating characteristic curve(AUC)metric is 0.9835,whereas its area under the precision-recall curve(AUPR)metric is 0.9822.Statistical analysis using 10-fold cross-validation experiments proves that these metrics are significant.Furthermore,three case studies on prostate,liver,and stomach cancers attest to the validity of CFGANLDA performance.As a result,CFGANLDA method proves to be a valued tool for lncRNA-disease association prediction.展开更多
The Savitzky-Golay(SG)filter,which employs polynomial least-squares approximations to smooth data and estimate derivatives,is widely used for processing noisy data.However,noise suppression by the SG filter is recogni...The Savitzky-Golay(SG)filter,which employs polynomial least-squares approximations to smooth data and estimate derivatives,is widely used for processing noisy data.However,noise suppression by the SG filter is recognized to be limited at data boundaries and high frequencies,which can significantly reduce the signal-to-noise ratio(SNR).To solve this problem,a novel method synergistically integrating Principal Component Analysis(PCA)with SG filtering is proposed in this paper.This approach avoids the is-sue of excessive smoothing associated with larger window sizes.The proposed PCA-SG filtering algorithm was applied to a CO gas sensing system based on Cavity Ring-Down Spectroscopy(CRDS).The perform-ance of the PCA-SG filtering algorithm is demonstrated through comparison with Moving Average Filtering(MAF),Wavelet Transformation(WT),Kalman Filtering(KF),and the SG filter.The results demonstrate that the proposed algorithm exhibits superior noise reduction capabilities compared to the other algorithms evaluated.The SNR of the ring-down signal was improved from 11.8612 dB to 29.0913 dB,and the stand-ard deviation of the extracted ring-down time constant was reduced from 0.037μs to 0.018μs.These results confirm that the proposed PCA-SG filtering algorithm effectively improves the smoothness of the ring-down curve data,demonstrating its feasibility.展开更多
基金supported by the Vietnam Ministry of Education and Training under project code B2023-SPH-14。
文摘It is known that long non-coding RNAs(lncRNAs)play vital roles in biological processes and contribute to the progression,development,and treatment of various diseases.Obviously,understanding associations between diseases and lncRNAs significantly enhances our ability to interpret disease mechanisms.Nevertheless,the process of determining lncRNA-disease associations is costly,labor-intensive,and time-consuming.Hence,it is expected to foster computational strategies to uncover lncRNA-disease relationships for further verification to save time and resources.In this study,a collaborative filtering and graph attention network-based LncRNA-Disease Association(CFGANLDA)method was nominated to expose potential lncRNA-disease associations.First,it takes into account the advantages of using biological information from multiple sources.Next,it uses a collaborative filtering technique in order to address the sparse data problem.It also employs a graph attention network to reinforce both linear and non-linear features of the associations to advance prediction performance.The computational results indicate that CFGANLDA gains better prediction performance compared to other state-of-the-art approaches.The CFGANLDA’s area under the receiver operating characteristic curve(AUC)metric is 0.9835,whereas its area under the precision-recall curve(AUPR)metric is 0.9822.Statistical analysis using 10-fold cross-validation experiments proves that these metrics are significant.Furthermore,three case studies on prostate,liver,and stomach cancers attest to the validity of CFGANLDA performance.As a result,CFGANLDA method proves to be a valued tool for lncRNA-disease association prediction.
文摘The Savitzky-Golay(SG)filter,which employs polynomial least-squares approximations to smooth data and estimate derivatives,is widely used for processing noisy data.However,noise suppression by the SG filter is recognized to be limited at data boundaries and high frequencies,which can significantly reduce the signal-to-noise ratio(SNR).To solve this problem,a novel method synergistically integrating Principal Component Analysis(PCA)with SG filtering is proposed in this paper.This approach avoids the is-sue of excessive smoothing associated with larger window sizes.The proposed PCA-SG filtering algorithm was applied to a CO gas sensing system based on Cavity Ring-Down Spectroscopy(CRDS).The perform-ance of the PCA-SG filtering algorithm is demonstrated through comparison with Moving Average Filtering(MAF),Wavelet Transformation(WT),Kalman Filtering(KF),and the SG filter.The results demonstrate that the proposed algorithm exhibits superior noise reduction capabilities compared to the other algorithms evaluated.The SNR of the ring-down signal was improved from 11.8612 dB to 29.0913 dB,and the stand-ard deviation of the extracted ring-down time constant was reduced from 0.037μs to 0.018μs.These results confirm that the proposed PCA-SG filtering algorithm effectively improves the smoothness of the ring-down curve data,demonstrating its feasibility.
