It has recently become evident that the de novo emergence of genes is widespread and documented for a variety of organisms.De novo genes frequently emerge in proximity to existing genes,forming gene overlaps.Here,we p...It has recently become evident that the de novo emergence of genes is widespread and documented for a variety of organisms.De novo genes frequently emerge in proximity to existing genes,forming gene overlaps.Here,we present an analysis of the evolutionary history of a putative de novo gene,lawc,which overlaps with the conserved Trf2 gene,which encodes a general transcription factor in Drosophila melanogaster.We demonstrate that lawc emerged approximately 68 million years ago in the 5'-untranslated region(UTR)of Trf2 and displays an extensive spatiotemporal expression pattern.One of the most remarkable features of the lawc evolutionary history is that its emergence was facilitated by the engagement of Drosophilidae-specific short,highly conserved regions located in Trf2 introns.This represents a unique example of putative de novo gene birth involving conserved DNA regions localized in introns of conserved genes.The observed lawc expression pattern may be due to the overlap of lawc with the 5'-UTR of Trf2.This study not only enriches our understanding of gene evolution but also highlights the complex interplay between genetic conservation and innovation.展开更多
Kinesins are a superfamily of proteins widely present in eukaryotes,playing crucial roles in plant cell wall assembly,cell elongation regulation,gravity sensing,and fertility control.In this study,bioinformatics analy...Kinesins are a superfamily of proteins widely present in eukaryotes,playing crucial roles in plant cell wall assembly,cell elongation regulation,gravity sensing,and fertility control.In this study,bioinformatics analysis of the OsKMP2 gene(LOC_Os02g28850)was performed using online tools such as ExPASy-ProtParam,ProtScale,CD-search,and DNAMAN software.Additionally,qRT-PCR was employed to analyze the tissue expression pattern of OsKMP2.The results showed that the molecular weight of the OsKMP2 is 118.39728 kDa,and it is a hydrophilic and unstable acidic protein.Secondary structure prediction revealed that it primarily consists ofα-helices(69.45%),random coils(25.19%),and extended strands(5.36%).The gene was expressed in various rice tissues,with the highest expression level observed in leaves.These results indicate that the OsKMP2 gene exhibits high evolutionary conservation and functional diversity in rice.展开更多
Mytilus contain abundant antimicrobial peptides(AMPs)that play a key role in the innate immunity.However,heterologous production of these AMPs remains challenging due to their short sequences,multiple disulfide bonds,...Mytilus contain abundant antimicrobial peptides(AMPs)that play a key role in the innate immunity.However,heterologous production of these AMPs remains challenging due to their short sequences,multiple disulfide bonds,and high content of cationic amino acids,which hinder functional expression in prokaryotic systems such as Escherichia coli.To establish a eukaryotic recombinant expression system for the AMPs of mussel and obtain recombinant mussel AMPs for subsequent studies,we reported the successful recombinant expression of myticofensin B1,a novel defensin-like AMP identified previously in Mytiluscoruscus,using the eukaryotic host Pichia pastoris.The codon-optimized gene encoding the mature myticofensin-B1(composed of 65 amino acid residues,including 6 conserved cysteine residues)was cloned into a pPICZαA vector and expressed in P.pastoris GS115.Structural fidelity of the recombinant peptide was confirmed by liquid chromatography-tandem mass spectrometry(LC-MS/MS),showing a molecular weight of 8849.9 Da,which was consistent with the theoretical prediction.Functional assays demonstrated a broad-spectrum antimicrobial activity of the recombinant myticofensin-B1,with stronger inhibition against Gram-negative bacteria.Scanning electron microscopy revealed different effects of the recombinant myticofensin-B1 against different bacteria.In addition,the recombinant myticofensin-B1 exhibited a very low hemolytic activity against sheep red blood cells and weak cytotoxicity against human A549 lung cancer cells.This study establishes P.pastoris as a powerful platform to produce functional mussel AMP and highlights the potential of the recombinant myticofensin-B1 as a therapeutic agent for aquaculture pathogens and infections.展开更多
The pathogenesis-related protein PR10 plays a vital role in plant growth,development,and stress responses.This study systematically identified and analyzed PR10 genes in cultivated peanut(Arachis hypogaea L.),examinin...The pathogenesis-related protein PR10 plays a vital role in plant growth,development,and stress responses.This study systematically identified and analyzed PR10 genes in cultivated peanut(Arachis hypogaea L.),examining their phylogenetic relationships,conserved motifs,gene structures,and syntenic relationships.The analysis identified 54 Ah PR10 genes,which were classified into eight groups based on phylogenetic relationships,supported by gene structure and conserved motif characterization.Analysis of chromosomal distribution and synteny demonstrated that segmental duplications played a crucial role in the expansion of the Ah PR10 gene family.The identified Ah PR10 genes exhibited both constitutive and inducible expression patterns.Significantly,Ah PR10-7,Ah PR10-33,and Ah PR10-41 demonstrated potential importance in peanut resistance to Aspergillus flavus.In vitro fungistatic experiments demonstrated that recombinant Ah PR10-33 effectively inhibited A.flavus mycelial growth.These findings provide valuable insights for future investigations into Ah PR10 functions in protecting peanut from A.flavus infection.展开更多
Due to the unique microstructure and diverse opsin genes of the trinocular compound eye,stomatopoda possess an extraordinary ability to perceive multiple properties of light.They not only can detect natural light(NL)a...Due to the unique microstructure and diverse opsin genes of the trinocular compound eye,stomatopoda possess an extraordinary ability to perceive multiple properties of light.They not only can detect natural light(NL)and linearly polarized light(LPL),but also are the only animals capable of recognizing circularly polarized light(CPL).Here,we integrated single-cell RNA sequencing,previously published Illumina data,and in-situ hybridization(ISH)to quantify and localize functional opsin genes in Oratosquilla oratoria,a common stomatopoda species in the China Sea.A total of high-quality 31777 cells were captured for the first time in the O.oratoria compound eye,which were classified into 25 cell subpopulations,and hypothesized that cluster 22 is a critical cell subpopulation responsible for light(whether NL,LPL,or CPL)response in O.oratoria.Furthermore,we propose that the long-wavelengthsensitive opsin gene(lws)gene family,retinol dehydrogenase(rdh),voltage-gated ion channel(vgic),arrestin(arr),and myosin(myo)collectively mediate the light response in O.oratoria.Considering that very few vision-related opsin genes show differential expression in right-handed CPL(RCPL)-vs.-dark(DL),which provides additional evidence that stomatopoda cannot recognize RCPL.Meanwhile,we believe that UV-stimulated scaffold protein A(uvssa)and red pigment concentrating hormone(rpch)play special contributions in the left-handed CPL(LCPL)environment response.ISH revealing that 16 lws,6 middle-wavelength-sensitive(mws),and 2 ultraviolet(uv)opsin genes were expressed in the photoreceptors of the O.oratoria compound eye.Although the inability to determine the functional types of cell subpopulations limits the resolution of opsin genes,these findings systematically elucidate the specific expression patterns of opsin genes in O.oratoria and represent a significant step toward refining the visual ecological theory of O.oratoria and other stomatopod species.展开更多
Mandarin fish(Siniperca scherzeri) has high market prices and significant market potential in China because of its highquality meat and high nutritional value. However, due to the limited scale of aquaculture, meeting...Mandarin fish(Siniperca scherzeri) has high market prices and significant market potential in China because of its highquality meat and high nutritional value. However, due to the limited scale of aquaculture, meeting the market demand is difficult, making the effective development of the aquaculture potential of mandarin fish an important challenge for the industry. In this study, a 30-d breeding experiment was conducted on mandarin fish larvae under three photoperiod conditions: G1 8 h light:16 h dark(8L:16D), G2 12 h light:12 h dark(12L:12D), and G3 16 h light:8 h dark(16L:8D). The results showed that the G2 group exhibited the best growth performance and development status, with final body weights, weight gain rates, and specific growth rates all higher than those of the other two groups(P < 0.05). Observations of sections from each group revealed that the intestinal villi length and muscle thickness of the G2 group were significantly greater than those of the other two groups(P < 0.05). The G2 group inhibited the transcriptional activation of key circadian rhythm genes, including nr1d2a, nr1d1 and per1, while upregulating the expression of BMAL1 in S. scherzeri.The activation of both the insulin signalling pathway and the Fox O signalling pathway enhanced the efficient secretion of insulin, which subsequently played a critical role in regulating fatty acid metabolism. This active fatty acid metabolism provided an optimal energy supply, ensuring that other nutrients were fully utilized during the growth and development process while minimizing unnecessary nutrient loss. Consequently, this mechanism effectively promoted the overall growth and development of S. scherzeri. This study was the first to elucidate the transcriptomic expression patterns of S. scherzeri under varying photoperiod conditions. In response to the cyclic alternation of day and night, S. scherzeri regulated their metabolic levels and the transcriptional activation of downstream target genes via insulin signalling.展开更多
Xishui National Forest Park in Heilongjiang Province hosts China's most pristine temperate forests and serves as a key site for ecotourism and forest therapy.However,the emission patterns of phytoncides(key bio ac...Xishui National Forest Park in Heilongjiang Province hosts China's most pristine temperate forests and serves as a key site for ecotourism and forest therapy.However,the emission patterns of phytoncides(key bio active compounds) remain poorly understood,limiting their therapeutic application.This study provides the first comprehensive characterization of spatiotemporal dynamics in airborne phytoncides and their synergistic interactions with environmental factors throughout the autumn-early spring seasonal transition in a temperate forest ecosystem.We analyzed the compositional dynamics of phytoncides and terpenoid content variations using thermal desorption-gas chromatography-mass spectrometry(TD-GC-MS) from September 2024 to March 2025.This period encompassed seasonal transitions from autumn to early spring,including diurnal variations in September and snowfall events in November.The method demonstrated detection limits(LODs) ranging from 1.35 to 5.33 ng m-3 and quantification limits(LOQs) from 4.09 to 16.15 ng m-3.Our results revealed pronounced seasonal fluctuations in phytoncide composition.In September,terpenoids,esters,alcohols,and alkanes displayed a diurnal "decrease-increase" trend,whereas aldehydes and ketones peaked at midday.Notably,esters and alcohols were undetectable in November and January.By January,terpenoids reached their lowest proportion(0.17±0.02%) at noon.Five terpenoids(α-pinene,myrcene,D-limonene,camphene,p-cymene) were detected in September,four(α-pinene,D-limonene,camphene,p-cymene) in November,two(D-limonene,p-cymene) in January,and only p-cymene in March.The total concentration and emission rate of the five terpenoids peaked in September afternoons at 1961.58±106.67 ng m^(-3) and653.86±35.56 ng m^(-3) h^(-1),respectively.Nocturnal emissions(32131.95±2522.21 ng m^(-3)) significantly surpassed daytime levels(14473.04±958.49 ng m^(-3)),with emission rates escalating from 1447.30±95.85 ng m^(-3) h^(-1)(day) to 5355.33±420.37 ng m^(-3) h^(-1)(night),marking a3.7-fold increase.Snowfall dramatically elevated terpenoid concentrations(pre-snowfall:158.58±14.12 ng m^(-3);post-snowfall:1080.57±57.76 ng m^(-3)) and emission rates(pre-snowfall:52.86±4.71 ng m^(-3) h^(-1);post-snowfall:360.19±19.25 ng m^(-3) h^(-1)),reflecting a 6.8-fold surge.This study underscores the profound influence of light intensity,seasonal shifts,and climatic conditions on airborne phytoncide levels,offering a scientific foundation for optimizing forest therapy and ecotourism strategies.展开更多
BACKGROUND Laryngeal squamous cell carcinoma(LSCC)is a prevalent head and neck malignancy with suboptimal survival rates due to late detection and therapeutic resistance.AIM To investigate chaperonin-containing TCP1 s...BACKGROUND Laryngeal squamous cell carcinoma(LSCC)is a prevalent head and neck malignancy with suboptimal survival rates due to late detection and therapeutic resistance.AIM To investigate chaperonin-containing TCP1 subunit 3(CCT3)expression and its clinical implications,and its effects on LSCC cell growth.METHODS Systematic data on CCT3 mRNA expression were collected from biomedical databases,and integrated further based on the standardized mean difference and the summary receiver operating characteristic curve.Single-cell RNA-seq data were mined to validate the expression level of CCT3 mRNA.In-house immunohistochemistry was performed to explore the CCT3 protein levels of clinical LSCC samples and their relationship with clinical parameters.The growth function of LSCC cell was analyzed using CRISPR knockout screening.CCT3-related signaling pathway analyses were conducted using gene set enrichment analysis.Protein-protein interaction network construction was performed to identify hub genes.RESULTS CCT3 mRNA was significantly overexpressed in 269 LSCC tissues cases across multiple independent datasets(standardized mean difference=32,area under the curve=0.93);At the translational level,the in-house immunohistochemical analysis further demonstrated the consistent upregulation of CCT3 protein in 88 cases of LSCC samples(58 non-LSCC samples vs 30 LSCC samples,P=1.4e^(-14)).Analysis of clinical parameters showed no significant differences among subgroup.Functional characterization with clustered regularly interspaced short palindromic repeats--mediated gene knockout revealed that depletion of CCT3 potently suppressed LSCC cell viability in vitro.Gene set enrichment analysis indicated that CCT3 was markedly associated with several key oncogenic pathways,including extracellular matrix receptor interaction and cell cycle regulation pathways.CONCLUSION CCT3 upregulation in LSCC may influence cellular growth by regulating related pathways,indicating its potential as a biomarker and therapeutic target for LSCC.展开更多
Under the influence of human activities,landscape fragmentation in the Wei River Basin(WRB)has become increasingly severe.Upstream development has intensified soil erosion,and industrial and agricultural pollution in ...Under the influence of human activities,landscape fragmentation in the Wei River Basin(WRB)has become increasingly severe.Upstream development has intensified soil erosion,and industrial and agricultural pollution in the middle reaches has degraded water quality.Rapid urbanization has further caused habitat fragmentation and biodiversity loss.Collectively,these challenges threaten human well-being and hinder sustainable development,making the construction and optimization of an ecological security pattern(ESP)urgently necessary.However,existing studies often fail to systematically integrate future landscape ecological risk(LER)assessment with ESP optimization.This study evaluated regional LER using the“ecological patches-ecological resistance surface(ERS)-ecological corridor”framework,combined with land-use predictions under three development scenarios,and optimized the ESP by adjusting the ERS and extracting ecological corridors.The results indicate that the LER in the WRB follows an“inverted N”distribution,with low-risk areas concentrated in forested mountain regions and high-risk areas mainly in cultivated land subject to intensive human activity.Across future scenarios,ESPs showed fewer ecological breakpoints and improved landscape connectivity than the 2020 baseline.Scenario-based differences emerged in the spatial configuration of ERS adjustments,with the ecological protection scenario yielding the lowest LER and most favorable ESP.This study demonstrates the deep integration of multi-scenario simulation with LER assessment,providing a new framework for ESP optimization.The findings have guiding significance for ecological protection and coordinated development in the WRB and offer a novel paradigm for sustainable development in ecologically fragile basins worldwide.展开更多
Traditional Chinese medicine(TCM)is a holistic medical system that classifies and treats diseases based on the concept of patterns.These patterns describe the pathophysiological process of a disease at a specific stag...Traditional Chinese medicine(TCM)is a holistic medical system that classifies and treats diseases based on the concept of patterns.These patterns describe the pathophysiological process of a disease at a specific stage,reflecting both external signs and internal features.TCM patterns are central to pattern differentiation,treatment,clinical practice,and theoretical development in TCM.However,scientific explanation of TCM patterns remains limited because of subjective diagnostic criteria,the absence of a standardized experimental medical system,and unclear biological mechanisms,which restrict the modernization and globalization of TCM.Addressing challenges such as strong subjectivity in diagnosis,lack of standardized experimental systems,and unclear biological mechanisms is necessary to clarify the scientific meaning of TCM patterns and to provide technical approaches for the modernization and globalization of TCM.A strategy focused on“pathogenic factors,genetic predisposition,and disease progression stages”was adopted.This approach included the following:(Ⅰ)constructing disease-pattern integrated biological models with animal models,organoids,and multi-organ chips;(Ⅱ)applying multi-omics technologies,such as spatial omics,single-cell omics,and dynamic metabolic flux omics;(Ⅲ)using artificial intelligence(AI)and big data for data integration and prediction of pattern evolution;and(Ⅳ)validating formula–pattern associations through the“pattern differentiation through formula efficacy”approach.These strategies directly address the main obstacles in TCM pattern research by providing objective,quantifiable,and reproducible methodologies.Constructing disease-pattern integrated models enabled cross-scale research platforms.Applying multi-omics technologies allowed analysis of complex biological bases.AI and big data approaches addressed challenges related to heterogeneous data.The“formula-based pattern differentiation”approach supported precise interventions and the development of new drugs.This interdisciplinary framework advances TCM pattern research by moving from empirical description to objective quantification.By integrating innovative approaches,the study establishes a foundation for systematic,evidence-based TCM diagnosis and treatment,supporting accuracy and promoting international recognition and modernization of TCM.The study shows that combining multi-omics technologies,AI-driven data analysis,and disease-pattern models enables objective quantification of TCM patterns and clarifies their biological mechanisms.展开更多
Dear Editor,Understanding patterns of species diversity is a primary research focus in macroecology,with its distribution patterns having been described and theoretically validated on a global scale(Peters et al.,2016...Dear Editor,Understanding patterns of species diversity is a primary research focus in macroecology,with its distribution patterns having been described and theoretically validated on a global scale(Peters et al.,2016;Sonne et al.,2025).Numerous studies have found that species richness of different taxa tends to decrease with increasing elevation and is modulated by latitudinal gradients(Peters et al.,2016;Dolson et al.,2024).This principle provides a crucial scientific basis for regional conservation planning.However,it still exhibits significant variations across different mountain ranges and taxa.展开更多
Urban forests are essential components of green infrastructure,however,rapid urbanization-induced changes in landscape patterns may affect their ecosystem services through complex ecological processes.A total of 184 s...Urban forests are essential components of green infrastructure,however,rapid urbanization-induced changes in landscape patterns may affect their ecosystem services through complex ecological processes.A total of 184 sample plots in the built-up areas of Nanchang,China,were used as research sites.Urbanization intensities were categorized by the rate of impervious surface area,and forest types were classified into landscape and relaxation forest,attached forest(AF),road forest(RF),and ecological public welfare forest.This study aimed to explore the spatial variations in vegetation characteristics and landscape pattern indices of different forest types under rapid urbanization.The results indicated that the largest patch index(LPI),aggregation index(AI),and percentage of landscape(PLAND)in RF and AF were lower than those in the other forest types(p<0.05).With increasing urbanization intensity,the mean perimeter-area ratio increased by 130.84%,whereas the PLAND,LPI,and AI decreased by 22−86%(p<0.05).Redundancy analysis and variation partitioning suggested that the interpretation rate of landscape pattern indices for variations in vegetation characteristics increased from low to heavy urbanization areas.Especially,the landscape shape index,patch connection index,PLAND,and mean patch size were significantly correlated with vegetation characteristics(e.g.,tree richness,herb coverage,and tree height).In the future,appropriate landscape layout superiority cases should be considered in different urbanization areas and forest types;for instance,increasing the patch connection index will beneficially improve the diversity of trees and herbs in heavy urbanization areas and the RF.This study serves as a reference for maximizing the ecosystem services of urban forests.展开更多
[Objectives]To investigate the structure and function of the lipoxygenase(LOX)gene family in Physcomitrella patens.[Methods]This study employed bioinformatics methods to identify and predict LOX gene family members.Qu...[Objectives]To investigate the structure and function of the lipoxygenase(LOX)gene family in Physcomitrella patens.[Methods]This study employed bioinformatics methods to identify and predict LOX gene family members.Quantitative real-time PCR(qRT-PCR)was utilized to analyze the expression patterns of LOX genes at different stages of Botrytis cinerea infection.[Results]The P.patens LOX gene family comprises eight putative proteins,including two 12-LOX-type members and six 13-LOX-type members.Among the eight LOX proteins,PpLOX7 exhibited the lowest molecular weight and shortest amino acid sequence.PpLOX7 was identified as a basic protein with an isoelectric point(pI)of 8.54,while all other members were acidic.Subcellular localization analysis indicated that PpLOX7 was localized to the chloroplast,whereas the remaining members were distributed in the cytoplasm.Secondary structure prediction showed that all eight proteins were predominantly composed of random coils andα-helixes.Chromosomal mapping revealed that the LOX genes were distributed across 7 of the 27 chromosomes in P.patens,with PpLOX1 and PpLOX2 tandemly arranged on chromosome 15.The qRT-PCR analysis demonstrated distinct expression patterns among the eight PpLOX genes following B.cinerea infection.PpLOX1-3 and PpLOX7 were upregulated to varying degrees,suggesting their potential involvement in the early defense response of P.patens against B.cinerea.Notably,PpLOX2 exhibited highly significant differential expression,making it a key candidate for further investigation.[Conclusions]This study provides foundational insights into the functional roles of the LOX gene family in P.patens during biotic stress responses.展开更多
Background:Scutellaria baicalensis Georgi is a medicinal plant prized for its bioactive flavonoid derivatives.Flavonoid O-methyltransferases(OMTs)in this species play a vital role in enhancing these compounds’pharmac...Background:Scutellaria baicalensis Georgi is a medicinal plant prized for its bioactive flavonoid derivatives.Flavonoid O-methyltransferases(OMTs)in this species play a vital role in enhancing these compounds’pharmacological activities,including their antioxidant,anti-inflammatory,and anticancer effects.However,a comprehensive genomic overview of the OMT gene family in S.baicalensis is lacking.Methods:This study conducted a genome-wide identification of the OMT gene family in S.baicalensis using bioinformatics approaches.The identified genes were characterized through phylogenetic,physicochemical,and structural analyses.Furthermore,the response of methoxylated flavonoids and key SbOMT genes to drought stress was investigated.Results:A total of 54 SbOMTs were identified and classified into 9 CCoAOMT and 45 COMT subfamily members.These proteins,with lengths from 129 to 695 amino acids and molecular weights from 14.42 to 76.94 kDa,were predominantly acidic.Subcellular localization predicted 43% to be cytoplasmic.Structurally,the CCoAOMT subfamily was more conserved than the COMT subfamily.Promoter analysis revealed hormone-and stress-responsive cis-elements.Under drought stress,the root content of methoxylated flavonoids(wogonin,wogonoside,and oroxylin A)decreased initially and then increased.The expression of SbOMT06,SbOMT41,SbOMT27,and SbOMT29 was positively correlated with this accumulation,suggesting their involvement in biosynthesis.Conclusion:This study provides foundational insights into the SbOMT gene family,revealing key candidates likely involved in methoxyflavonoid biosynthesis.The findings advance our understanding of the molecular mechanisms in S.baicalensis and offer valuable resources for future metabolic engineering and pathway optimization efforts.展开更多
The performance of data restore is one of the key indicators of user experience for backup storage systems.Compared to the traditional offline restore process,online restore reduces downtime during backup restoration,...The performance of data restore is one of the key indicators of user experience for backup storage systems.Compared to the traditional offline restore process,online restore reduces downtime during backup restoration,allowing users to operate on already restored files while other files are still being restored.This approach improves availability during restoration tasks but suffers from a critical limitation:inconsistencies between the access sequence and the restore sequence.In many cases,the file a user needs to access at a given moment may not yet be restored,resulting in significant delays and poor user experience.To this end,we present Histore,which builds on the user’s historical access sequence to schedule the restore sequence,in order to reduce users’access delayed time.Histore includes three restore approaches:(i)the frequency-based approach,which restores files based on historical file access frequencies and prioritizes ensuring the availability of frequently accessed files;(ii)the graph-based approach,which preferentially restores the frequently accessed files as well as their correlated files based on historical access patterns,and(iii)the trie-based approach,which restores particular files based on both users’real-time and historical access patterns to deduce and restore the files to be accessed in the near future.We implement a prototype of Histore and evaluate its performance from multiple perspectives.Trace-driven experiments on two datasets show that Histore significantly reduces users’delay time by 4-700×with only 1.0%-14.5%additional performance overhead.展开更多
Enhancing the kinetic stability of glasses typically requires deepening their thermodynamic stability,which increases structural rigidity and degrades ductility;decoupling these properties remains a major challenge.He...Enhancing the kinetic stability of glasses typically requires deepening their thermodynamic stability,which increases structural rigidity and degrades ductility;decoupling these properties remains a major challenge.Here,we demonstrate that spatial patterning in metallic glasses produces exceptional kinetic ultrastability that coexists with a thermodynamically metastable,high-energy state and excellent plasticity.Guided by atomistic simulations using replica exchange molecular dynamics and machine learning interatomic potentials,we reveal that oxygen,through reaction-diffusion-coupled pattern dynamics,self-organizes into oxygen-centered pinned structures(OPSs)that serve as localized kinetic constraints.These motifs drastically slow structural relaxation,delivering kinetic stability comparable to ultrastable glasses even as the system retains the high inherent energy of rapidly quenched states.The OPSs’topology yields a spatially uniform activation of plastic events,promoting strain delocalization under mechanical load.By geometrically tailoring oxygen patterns,we increase the glass transition onset temperature(Tonset)by about 200 K with negligible loss of deformability.Our findings establish a practicable paradigm for decoupling kinetic and thermodynamic stability and point to a scalable,additive route for designing amorphous materials that combine hyperstability with plasticity.展开更多
Owing to the exceptional optoelectronic properties,metal halide perovskites have emerged as leading semiconductor materials for next-generation display technologies,providing perovskite light-emitting diodes(Pe LEDs)g...Owing to the exceptional optoelectronic properties,metal halide perovskites have emerged as leading semiconductor materials for next-generation display technologies,providing perovskite light-emitting diodes(Pe LEDs)great potential for high-quality color displays with a wide color gamut and pure color emission.Although laboratory-scale Pe LEDs have achieved neartheoretical efficiencies,challenges such as achieving uniform large-area films,improving material stability,and enhancing patterning precision remain barriers to commercialization.This review presents a systematic analysis of scalable manufacturing and precision patterning strategies for Pe LEDs,focusing on their applications in large-area lighting and full-color displays.Fabrication methods are categorized into film deposition techniques(spin-coating,blade-coating,and thermal evaporation)and patterning strategies,including top-down(photolithography,laser/e-beam lithography,and nanoimprinting)and bottom-up(patterned crystal growth,inkjet printing,and electrohydrodynamic jet printing)approaches.In this review,we discuss the advantages and limitations of each strategy,highlight current challenges,and outlook possible pathways towards scalable,high-performance Pe LEDs for advanced optoelectronic applications.展开更多
Tajikistan represents a core region of the biodiversity hotspot in Central Asian mountains and has exceptional vascular plant diversity.However,the species diversity of the country faces urgent conservation challenges...Tajikistan represents a core region of the biodiversity hotspot in Central Asian mountains and has exceptional vascular plant diversity.However,the species diversity of the country faces urgent conservation challenges.There has been a lack of a comprehensive and multidimensional assessment to inform strategic conservation planning.Therefore,this study integrated 4 key biodiversity indices including species richness(SR),phylogenetic diversity(PD),threatened species richness(TSR),and endemic species richness(ESR)to map species diversity distribution patterns,identify conservation gaps,and elucidate their effects of climatic factors.This study revealed that species diversity shows a clear trend of decreasing from the western region to the eastern region of Tajikistan.The central–western mountains(specifically the Gissar-Darvasian and Zeravshanian regions)emerge as irreplaceable biodiversity hotspots.However,we found a severe spatial mismatch between these priority areas and the existing protected areas(PAs).Protection coverage for all hotspots was alarmingly low,ranging from 31.00%to 38.00%.Consequently,a critical 64.80%of integrated priority areas fall outside of the current PAs,representing a major conservation gap.This study identified precipitation seasonality and isothermality as the principal drivers,collectively explaining over 50.00%of the diversity variation and suggesting high vulnerability to hydrological shifts.Furthermore,we detected significant geographic sampling bias in the public biodiversity databases,with the most critical hotspot being systematically under-sampled.This study provides a robust scientific basis for conservation action,highlighting the urgent need to strategically expand PAs in the under-protected southwestern region and to mitigate critical sampling gaps through targeted data digitization and field surveys.These measures are indispensable for securing Tajikistan’s unique biodiversity and achieving the Kunming-Montreal Global Biodiversity Framework Target 3(“30×30 Protection”).展开更多
Wide-field mesoscopy provides the capabilities of cortex-wide field of view(FOV),cellular resolution and high frame rate for neuronal imaging in the mouse brain.However,inherent background fluorescence degrades the im...Wide-field mesoscopy provides the capabilities of cortex-wide field of view(FOV),cellular resolution and high frame rate for neuronal imaging in the mouse brain.However,inherent background fluorescence degrades the image quality and hinders neuronal signal extraction.To address this problem,we first introduce a cortex-wide,high-resolution lineillumination mesoscope with a moving slit designed for in vivo mouse brain imaging.This system achieves a 6.6×6.6 mm FOV,microscale cellular resolution,a high frame rate of 10 Hz,as well as the background rejection ability.Furthermore,we integrated patterned illumination into the system to enhance the background suppression.Experimental results show that the proposed system successfully captures neurodynamics in the living mouse brain.Compared with conventional wide-field mesoscopes,the cortex-wide patterned line-illumination mesoscope(PLIM)achieves a threefold increase in the signal-to-background ratio(SBR).With patterned illumination integrated,the SBR enhancement further reaches four-anda-half-fold.展开更多
基金funded by a grant from the Russian Science Foundation № 24-24-00354
文摘It has recently become evident that the de novo emergence of genes is widespread and documented for a variety of organisms.De novo genes frequently emerge in proximity to existing genes,forming gene overlaps.Here,we present an analysis of the evolutionary history of a putative de novo gene,lawc,which overlaps with the conserved Trf2 gene,which encodes a general transcription factor in Drosophila melanogaster.We demonstrate that lawc emerged approximately 68 million years ago in the 5'-untranslated region(UTR)of Trf2 and displays an extensive spatiotemporal expression pattern.One of the most remarkable features of the lawc evolutionary history is that its emergence was facilitated by the engagement of Drosophilidae-specific short,highly conserved regions located in Trf2 introns.This represents a unique example of putative de novo gene birth involving conserved DNA regions localized in introns of conserved genes.The observed lawc expression pattern may be due to the overlap of lawc with the 5'-UTR of Trf2.This study not only enriches our understanding of gene evolution but also highlights the complex interplay between genetic conservation and innovation.
基金Supported by College Student Innovation and Entrepreneurship Training Program(S202210553003)Hunan Provincial Education Department Outstanding Youth Research Project(23B0820).
文摘Kinesins are a superfamily of proteins widely present in eukaryotes,playing crucial roles in plant cell wall assembly,cell elongation regulation,gravity sensing,and fertility control.In this study,bioinformatics analysis of the OsKMP2 gene(LOC_Os02g28850)was performed using online tools such as ExPASy-ProtParam,ProtScale,CD-search,and DNAMAN software.Additionally,qRT-PCR was employed to analyze the tissue expression pattern of OsKMP2.The results showed that the molecular weight of the OsKMP2 is 118.39728 kDa,and it is a hydrophilic and unstable acidic protein.Secondary structure prediction revealed that it primarily consists ofα-helices(69.45%),random coils(25.19%),and extended strands(5.36%).The gene was expressed in various rice tissues,with the highest expression level observed in leaves.These results indicate that the OsKMP2 gene exhibits high evolutionary conservation and functional diversity in rice.
基金supported by the National Natural Science Foundation of China(32271580,42020104009)the Fundamental Research Funds for Zhejiang Provincial Universities and Research Institutes(JX6311101923)。
文摘Mytilus contain abundant antimicrobial peptides(AMPs)that play a key role in the innate immunity.However,heterologous production of these AMPs remains challenging due to their short sequences,multiple disulfide bonds,and high content of cationic amino acids,which hinder functional expression in prokaryotic systems such as Escherichia coli.To establish a eukaryotic recombinant expression system for the AMPs of mussel and obtain recombinant mussel AMPs for subsequent studies,we reported the successful recombinant expression of myticofensin B1,a novel defensin-like AMP identified previously in Mytiluscoruscus,using the eukaryotic host Pichia pastoris.The codon-optimized gene encoding the mature myticofensin-B1(composed of 65 amino acid residues,including 6 conserved cysteine residues)was cloned into a pPICZαA vector and expressed in P.pastoris GS115.Structural fidelity of the recombinant peptide was confirmed by liquid chromatography-tandem mass spectrometry(LC-MS/MS),showing a molecular weight of 8849.9 Da,which was consistent with the theoretical prediction.Functional assays demonstrated a broad-spectrum antimicrobial activity of the recombinant myticofensin-B1,with stronger inhibition against Gram-negative bacteria.Scanning electron microscopy revealed different effects of the recombinant myticofensin-B1 against different bacteria.In addition,the recombinant myticofensin-B1 exhibited a very low hemolytic activity against sheep red blood cells and weak cytotoxicity against human A549 lung cancer cells.This study establishes P.pastoris as a powerful platform to produce functional mussel AMP and highlights the potential of the recombinant myticofensin-B1 as a therapeutic agent for aquaculture pathogens and infections.
基金supported by the National Key R&D Program of China(2022YFD1200400)the National Natural Science Foundation of China(32301851)。
文摘The pathogenesis-related protein PR10 plays a vital role in plant growth,development,and stress responses.This study systematically identified and analyzed PR10 genes in cultivated peanut(Arachis hypogaea L.),examining their phylogenetic relationships,conserved motifs,gene structures,and syntenic relationships.The analysis identified 54 Ah PR10 genes,which were classified into eight groups based on phylogenetic relationships,supported by gene structure and conserved motif characterization.Analysis of chromosomal distribution and synteny demonstrated that segmental duplications played a crucial role in the expansion of the Ah PR10 gene family.The identified Ah PR10 genes exhibited both constitutive and inducible expression patterns.Significantly,Ah PR10-7,Ah PR10-33,and Ah PR10-41 demonstrated potential importance in peanut resistance to Aspergillus flavus.In vitro fungistatic experiments demonstrated that recombinant Ah PR10-33 effectively inhibited A.flavus mycelial growth.These findings provide valuable insights for future investigations into Ah PR10 functions in protecting peanut from A.flavus infection.
基金Supported by the Natural Science Foundation of Shandong Province(No.ZR2021QD110)the National Natural Science Foundation of China(No.42106128)。
文摘Due to the unique microstructure and diverse opsin genes of the trinocular compound eye,stomatopoda possess an extraordinary ability to perceive multiple properties of light.They not only can detect natural light(NL)and linearly polarized light(LPL),but also are the only animals capable of recognizing circularly polarized light(CPL).Here,we integrated single-cell RNA sequencing,previously published Illumina data,and in-situ hybridization(ISH)to quantify and localize functional opsin genes in Oratosquilla oratoria,a common stomatopoda species in the China Sea.A total of high-quality 31777 cells were captured for the first time in the O.oratoria compound eye,which were classified into 25 cell subpopulations,and hypothesized that cluster 22 is a critical cell subpopulation responsible for light(whether NL,LPL,or CPL)response in O.oratoria.Furthermore,we propose that the long-wavelengthsensitive opsin gene(lws)gene family,retinol dehydrogenase(rdh),voltage-gated ion channel(vgic),arrestin(arr),and myosin(myo)collectively mediate the light response in O.oratoria.Considering that very few vision-related opsin genes show differential expression in right-handed CPL(RCPL)-vs.-dark(DL),which provides additional evidence that stomatopoda cannot recognize RCPL.Meanwhile,we believe that UV-stimulated scaffold protein A(uvssa)and red pigment concentrating hormone(rpch)play special contributions in the left-handed CPL(LCPL)environment response.ISH revealing that 16 lws,6 middle-wavelength-sensitive(mws),and 2 ultraviolet(uv)opsin genes were expressed in the photoreceptors of the O.oratoria compound eye.Although the inability to determine the functional types of cell subpopulations limits the resolution of opsin genes,these findings systematically elucidate the specific expression patterns of opsin genes in O.oratoria and represent a significant step toward refining the visual ecological theory of O.oratoria and other stomatopod species.
基金The Science and Technology Plan of Dalian under contract Nos 2023RO058 and 2022RQ060the Liaoning Province Natural Science Planning Fund Project under contract No. 2022-BS-273+1 种基金the Liaoning Provincial Department of Education Basic Research Project under contract No. LJKQZ20222357the Discipline Construction Funding for Marine Science Subject of Dalian Ocean University。
文摘Mandarin fish(Siniperca scherzeri) has high market prices and significant market potential in China because of its highquality meat and high nutritional value. However, due to the limited scale of aquaculture, meeting the market demand is difficult, making the effective development of the aquaculture potential of mandarin fish an important challenge for the industry. In this study, a 30-d breeding experiment was conducted on mandarin fish larvae under three photoperiod conditions: G1 8 h light:16 h dark(8L:16D), G2 12 h light:12 h dark(12L:12D), and G3 16 h light:8 h dark(16L:8D). The results showed that the G2 group exhibited the best growth performance and development status, with final body weights, weight gain rates, and specific growth rates all higher than those of the other two groups(P < 0.05). Observations of sections from each group revealed that the intestinal villi length and muscle thickness of the G2 group were significantly greater than those of the other two groups(P < 0.05). The G2 group inhibited the transcriptional activation of key circadian rhythm genes, including nr1d2a, nr1d1 and per1, while upregulating the expression of BMAL1 in S. scherzeri.The activation of both the insulin signalling pathway and the Fox O signalling pathway enhanced the efficient secretion of insulin, which subsequently played a critical role in regulating fatty acid metabolism. This active fatty acid metabolism provided an optimal energy supply, ensuring that other nutrients were fully utilized during the growth and development process while minimizing unnecessary nutrient loss. Consequently, this mechanism effectively promoted the overall growth and development of S. scherzeri. This study was the first to elucidate the transcriptomic expression patterns of S. scherzeri under varying photoperiod conditions. In response to the cyclic alternation of day and night, S. scherzeri regulated their metabolic levels and the transcriptional activation of downstream target genes via insulin signalling.
基金supported by the Key Research and Development Plan Project of Heilongjiang Province (2022ZX02C13)。
文摘Xishui National Forest Park in Heilongjiang Province hosts China's most pristine temperate forests and serves as a key site for ecotourism and forest therapy.However,the emission patterns of phytoncides(key bio active compounds) remain poorly understood,limiting their therapeutic application.This study provides the first comprehensive characterization of spatiotemporal dynamics in airborne phytoncides and their synergistic interactions with environmental factors throughout the autumn-early spring seasonal transition in a temperate forest ecosystem.We analyzed the compositional dynamics of phytoncides and terpenoid content variations using thermal desorption-gas chromatography-mass spectrometry(TD-GC-MS) from September 2024 to March 2025.This period encompassed seasonal transitions from autumn to early spring,including diurnal variations in September and snowfall events in November.The method demonstrated detection limits(LODs) ranging from 1.35 to 5.33 ng m-3 and quantification limits(LOQs) from 4.09 to 16.15 ng m-3.Our results revealed pronounced seasonal fluctuations in phytoncide composition.In September,terpenoids,esters,alcohols,and alkanes displayed a diurnal "decrease-increase" trend,whereas aldehydes and ketones peaked at midday.Notably,esters and alcohols were undetectable in November and January.By January,terpenoids reached their lowest proportion(0.17±0.02%) at noon.Five terpenoids(α-pinene,myrcene,D-limonene,camphene,p-cymene) were detected in September,four(α-pinene,D-limonene,camphene,p-cymene) in November,two(D-limonene,p-cymene) in January,and only p-cymene in March.The total concentration and emission rate of the five terpenoids peaked in September afternoons at 1961.58±106.67 ng m^(-3) and653.86±35.56 ng m^(-3) h^(-1),respectively.Nocturnal emissions(32131.95±2522.21 ng m^(-3)) significantly surpassed daytime levels(14473.04±958.49 ng m^(-3)),with emission rates escalating from 1447.30±95.85 ng m^(-3) h^(-1)(day) to 5355.33±420.37 ng m^(-3) h^(-1)(night),marking a3.7-fold increase.Snowfall dramatically elevated terpenoid concentrations(pre-snowfall:158.58±14.12 ng m^(-3);post-snowfall:1080.57±57.76 ng m^(-3)) and emission rates(pre-snowfall:52.86±4.71 ng m^(-3) h^(-1);post-snowfall:360.19±19.25 ng m^(-3) h^(-1)),reflecting a 6.8-fold surge.This study underscores the profound influence of light intensity,seasonal shifts,and climatic conditions on airborne phytoncide levels,offering a scientific foundation for optimizing forest therapy and ecotourism strategies.
基金Supported by the National Natural Science Foundation of China,No.82160213 and No.U22A2022the Guangxi Natural Science Foundation,No.2023GXNSFAA026029,No.2024GXNSFBA010059,and No.2024GXNSFAA010079。
文摘BACKGROUND Laryngeal squamous cell carcinoma(LSCC)is a prevalent head and neck malignancy with suboptimal survival rates due to late detection and therapeutic resistance.AIM To investigate chaperonin-containing TCP1 subunit 3(CCT3)expression and its clinical implications,and its effects on LSCC cell growth.METHODS Systematic data on CCT3 mRNA expression were collected from biomedical databases,and integrated further based on the standardized mean difference and the summary receiver operating characteristic curve.Single-cell RNA-seq data were mined to validate the expression level of CCT3 mRNA.In-house immunohistochemistry was performed to explore the CCT3 protein levels of clinical LSCC samples and their relationship with clinical parameters.The growth function of LSCC cell was analyzed using CRISPR knockout screening.CCT3-related signaling pathway analyses were conducted using gene set enrichment analysis.Protein-protein interaction network construction was performed to identify hub genes.RESULTS CCT3 mRNA was significantly overexpressed in 269 LSCC tissues cases across multiple independent datasets(standardized mean difference=32,area under the curve=0.93);At the translational level,the in-house immunohistochemical analysis further demonstrated the consistent upregulation of CCT3 protein in 88 cases of LSCC samples(58 non-LSCC samples vs 30 LSCC samples,P=1.4e^(-14)).Analysis of clinical parameters showed no significant differences among subgroup.Functional characterization with clustered regularly interspaced short palindromic repeats--mediated gene knockout revealed that depletion of CCT3 potently suppressed LSCC cell viability in vitro.Gene set enrichment analysis indicated that CCT3 was markedly associated with several key oncogenic pathways,including extracellular matrix receptor interaction and cell cycle regulation pathways.CONCLUSION CCT3 upregulation in LSCC may influence cellular growth by regulating related pathways,indicating its potential as a biomarker and therapeutic target for LSCC.
基金supported by the National Natural Science Foundation of China[Grant No.42361040].
文摘Under the influence of human activities,landscape fragmentation in the Wei River Basin(WRB)has become increasingly severe.Upstream development has intensified soil erosion,and industrial and agricultural pollution in the middle reaches has degraded water quality.Rapid urbanization has further caused habitat fragmentation and biodiversity loss.Collectively,these challenges threaten human well-being and hinder sustainable development,making the construction and optimization of an ecological security pattern(ESP)urgently necessary.However,existing studies often fail to systematically integrate future landscape ecological risk(LER)assessment with ESP optimization.This study evaluated regional LER using the“ecological patches-ecological resistance surface(ERS)-ecological corridor”framework,combined with land-use predictions under three development scenarios,and optimized the ESP by adjusting the ERS and extracting ecological corridors.The results indicate that the LER in the WRB follows an“inverted N”distribution,with low-risk areas concentrated in forested mountain regions and high-risk areas mainly in cultivated land subject to intensive human activity.Across future scenarios,ESPs showed fewer ecological breakpoints and improved landscape connectivity than the 2020 baseline.Scenario-based differences emerged in the spatial configuration of ERS adjustments,with the ecological protection scenario yielding the lowest LER and most favorable ESP.This study demonstrates the deep integration of multi-scenario simulation with LER assessment,providing a new framework for ESP optimization.The findings have guiding significance for ecological protection and coordinated development in the WRB and offer a novel paradigm for sustainable development in ecologically fragile basins worldwide.
基金supported by the National Key Research and Development Program of China(2022YFC3500100)the National Natural Science Foundation of China(82230126 and U24A20800)+3 种基金Noncommunicable Chronic Diseases-National Science and Technology Major Project(2023ZD0502600 and 2023ZD0502601)National Science Fund for Excellent Young Scholars(82222075)the Incubation Program for the Science and Technology Development of Chinese Medicine Guangdong Laboratory(HQL2024PZ045 and HQCML-C-2024003)Guangdong Provincial Key Laboratory of Pattern and Formula(2022B1212010012).
文摘Traditional Chinese medicine(TCM)is a holistic medical system that classifies and treats diseases based on the concept of patterns.These patterns describe the pathophysiological process of a disease at a specific stage,reflecting both external signs and internal features.TCM patterns are central to pattern differentiation,treatment,clinical practice,and theoretical development in TCM.However,scientific explanation of TCM patterns remains limited because of subjective diagnostic criteria,the absence of a standardized experimental medical system,and unclear biological mechanisms,which restrict the modernization and globalization of TCM.Addressing challenges such as strong subjectivity in diagnosis,lack of standardized experimental systems,and unclear biological mechanisms is necessary to clarify the scientific meaning of TCM patterns and to provide technical approaches for the modernization and globalization of TCM.A strategy focused on“pathogenic factors,genetic predisposition,and disease progression stages”was adopted.This approach included the following:(Ⅰ)constructing disease-pattern integrated biological models with animal models,organoids,and multi-organ chips;(Ⅱ)applying multi-omics technologies,such as spatial omics,single-cell omics,and dynamic metabolic flux omics;(Ⅲ)using artificial intelligence(AI)and big data for data integration and prediction of pattern evolution;and(Ⅳ)validating formula–pattern associations through the“pattern differentiation through formula efficacy”approach.These strategies directly address the main obstacles in TCM pattern research by providing objective,quantifiable,and reproducible methodologies.Constructing disease-pattern integrated models enabled cross-scale research platforms.Applying multi-omics technologies allowed analysis of complex biological bases.AI and big data approaches addressed challenges related to heterogeneous data.The“formula-based pattern differentiation”approach supported precise interventions and the development of new drugs.This interdisciplinary framework advances TCM pattern research by moving from empirical description to objective quantification.By integrating innovative approaches,the study establishes a foundation for systematic,evidence-based TCM diagnosis and treatment,supporting accuracy and promoting international recognition and modernization of TCM.The study shows that combining multi-omics technologies,AI-driven data analysis,and disease-pattern models enables objective quantification of TCM patterns and clarifies their biological mechanisms.
基金supported by the Guizhou Provincial Science and Technology Projects(Grant Nos.ZK[2022]540 and[2023]099)the Survey of Amphibian and Reptile Resources in Leigongshan Nature Reserve and Literature Publishing Services(P5226002023000019).
文摘Dear Editor,Understanding patterns of species diversity is a primary research focus in macroecology,with its distribution patterns having been described and theoretically validated on a global scale(Peters et al.,2016;Sonne et al.,2025).Numerous studies have found that species richness of different taxa tends to decrease with increasing elevation and is modulated by latitudinal gradients(Peters et al.,2016;Dolson et al.,2024).This principle provides a crucial scientific basis for regional conservation planning.However,it still exhibits significant variations across different mountain ranges and taxa.
基金supported by the National Natural Science Foundation of China(32460380,42007042)State Key Laboratory of Subtropical Silviculture(SKLSSKF2023-06)+2 种基金Natural Science Foundation of Jiangxi Province(20242BAB25389)National Undergraduate Innovation and Entrepreneurship Training Program(202410410029X)Jiangxi Province Graduate Student Innovation Special Fund Project(YC2024-S330).
文摘Urban forests are essential components of green infrastructure,however,rapid urbanization-induced changes in landscape patterns may affect their ecosystem services through complex ecological processes.A total of 184 sample plots in the built-up areas of Nanchang,China,were used as research sites.Urbanization intensities were categorized by the rate of impervious surface area,and forest types were classified into landscape and relaxation forest,attached forest(AF),road forest(RF),and ecological public welfare forest.This study aimed to explore the spatial variations in vegetation characteristics and landscape pattern indices of different forest types under rapid urbanization.The results indicated that the largest patch index(LPI),aggregation index(AI),and percentage of landscape(PLAND)in RF and AF were lower than those in the other forest types(p<0.05).With increasing urbanization intensity,the mean perimeter-area ratio increased by 130.84%,whereas the PLAND,LPI,and AI decreased by 22−86%(p<0.05).Redundancy analysis and variation partitioning suggested that the interpretation rate of landscape pattern indices for variations in vegetation characteristics increased from low to heavy urbanization areas.Especially,the landscape shape index,patch connection index,PLAND,and mean patch size were significantly correlated with vegetation characteristics(e.g.,tree richness,herb coverage,and tree height).In the future,appropriate landscape layout superiority cases should be considered in different urbanization areas and forest types;for instance,increasing the patch connection index will beneficially improve the diversity of trees and herbs in heavy urbanization areas and the RF.This study serves as a reference for maximizing the ecosystem services of urban forests.
基金Supported by the Science and Technology Program of Guizhou Provence(Qiankehejichu-ZK[2023]Yiban 271).
文摘[Objectives]To investigate the structure and function of the lipoxygenase(LOX)gene family in Physcomitrella patens.[Methods]This study employed bioinformatics methods to identify and predict LOX gene family members.Quantitative real-time PCR(qRT-PCR)was utilized to analyze the expression patterns of LOX genes at different stages of Botrytis cinerea infection.[Results]The P.patens LOX gene family comprises eight putative proteins,including two 12-LOX-type members and six 13-LOX-type members.Among the eight LOX proteins,PpLOX7 exhibited the lowest molecular weight and shortest amino acid sequence.PpLOX7 was identified as a basic protein with an isoelectric point(pI)of 8.54,while all other members were acidic.Subcellular localization analysis indicated that PpLOX7 was localized to the chloroplast,whereas the remaining members were distributed in the cytoplasm.Secondary structure prediction showed that all eight proteins were predominantly composed of random coils andα-helixes.Chromosomal mapping revealed that the LOX genes were distributed across 7 of the 27 chromosomes in P.patens,with PpLOX1 and PpLOX2 tandemly arranged on chromosome 15.The qRT-PCR analysis demonstrated distinct expression patterns among the eight PpLOX genes following B.cinerea infection.PpLOX1-3 and PpLOX7 were upregulated to varying degrees,suggesting their potential involvement in the early defense response of P.patens against B.cinerea.Notably,PpLOX2 exhibited highly significant differential expression,making it a key candidate for further investigation.[Conclusions]This study provides foundational insights into the functional roles of the LOX gene family in P.patens during biotic stress responses.
基金funded by the National Natural Science Foundation of China(82404814,82404863)Start-up Research Fund of Nanjing Agricultural University(130-804141)+1 种基金the National Administration of Traditional Chinese Medicine High-level Key Discipline Construction Project(zyyzdxk-2023293)Scientific research Project of Jiangsu Institute of Product Quality Supervision and Inspection(KJ2025008).
文摘Background:Scutellaria baicalensis Georgi is a medicinal plant prized for its bioactive flavonoid derivatives.Flavonoid O-methyltransferases(OMTs)in this species play a vital role in enhancing these compounds’pharmacological activities,including their antioxidant,anti-inflammatory,and anticancer effects.However,a comprehensive genomic overview of the OMT gene family in S.baicalensis is lacking.Methods:This study conducted a genome-wide identification of the OMT gene family in S.baicalensis using bioinformatics approaches.The identified genes were characterized through phylogenetic,physicochemical,and structural analyses.Furthermore,the response of methoxylated flavonoids and key SbOMT genes to drought stress was investigated.Results:A total of 54 SbOMTs were identified and classified into 9 CCoAOMT and 45 COMT subfamily members.These proteins,with lengths from 129 to 695 amino acids and molecular weights from 14.42 to 76.94 kDa,were predominantly acidic.Subcellular localization predicted 43% to be cytoplasmic.Structurally,the CCoAOMT subfamily was more conserved than the COMT subfamily.Promoter analysis revealed hormone-and stress-responsive cis-elements.Under drought stress,the root content of methoxylated flavonoids(wogonin,wogonoside,and oroxylin A)decreased initially and then increased.The expression of SbOMT06,SbOMT41,SbOMT27,and SbOMT29 was positively correlated with this accumulation,suggesting their involvement in biosynthesis.Conclusion:This study provides foundational insights into the SbOMT gene family,revealing key candidates likely involved in methoxyflavonoid biosynthesis.The findings advance our understanding of the molecular mechanisms in S.baicalensis and offer valuable resources for future metabolic engineering and pathway optimization efforts.
基金supported in part by National Key R&D Program of China(2022YFB4501200),National Natural Science Foundation of China(62332018)Science and Technology Program(2024NSFTD0031,2024YFHZ0339 and 2025ZNSFSC0497).
文摘The performance of data restore is one of the key indicators of user experience for backup storage systems.Compared to the traditional offline restore process,online restore reduces downtime during backup restoration,allowing users to operate on already restored files while other files are still being restored.This approach improves availability during restoration tasks but suffers from a critical limitation:inconsistencies between the access sequence and the restore sequence.In many cases,the file a user needs to access at a given moment may not yet be restored,resulting in significant delays and poor user experience.To this end,we present Histore,which builds on the user’s historical access sequence to schedule the restore sequence,in order to reduce users’access delayed time.Histore includes three restore approaches:(i)the frequency-based approach,which restores files based on historical file access frequencies and prioritizes ensuring the availability of frequently accessed files;(ii)the graph-based approach,which preferentially restores the frequently accessed files as well as their correlated files based on historical access patterns,and(iii)the trie-based approach,which restores particular files based on both users’real-time and historical access patterns to deduce and restore the files to be accessed in the near future.We implement a prototype of Histore and evaluate its performance from multiple perspectives.Trace-driven experiments on two datasets show that Histore significantly reduces users’delay time by 4-700×with only 1.0%-14.5%additional performance overhead.
基金supported by the National Natural Science Foundation of China(Grants Nos.T2325004)the Advanced Materials-National Science and Technology Major Project(Grant No.2024ZD0606900)+3 种基金the Talent Hub for‘AI+New Materials’Basic Researchsupported by the Strategic Priority Research Program of the Chinese Academy of Sciences(Grant Nos.XDB0620103 and XDB0510301)the National Natural Science Foundation of China(Grant No.12472112)R.S.acknowledges the Young Scientists Fund of the National Natural Science Foundation of China(51801046).
文摘Enhancing the kinetic stability of glasses typically requires deepening their thermodynamic stability,which increases structural rigidity and degrades ductility;decoupling these properties remains a major challenge.Here,we demonstrate that spatial patterning in metallic glasses produces exceptional kinetic ultrastability that coexists with a thermodynamically metastable,high-energy state and excellent plasticity.Guided by atomistic simulations using replica exchange molecular dynamics and machine learning interatomic potentials,we reveal that oxygen,through reaction-diffusion-coupled pattern dynamics,self-organizes into oxygen-centered pinned structures(OPSs)that serve as localized kinetic constraints.These motifs drastically slow structural relaxation,delivering kinetic stability comparable to ultrastable glasses even as the system retains the high inherent energy of rapidly quenched states.The OPSs’topology yields a spatially uniform activation of plastic events,promoting strain delocalization under mechanical load.By geometrically tailoring oxygen patterns,we increase the glass transition onset temperature(Tonset)by about 200 K with negligible loss of deformability.Our findings establish a practicable paradigm for decoupling kinetic and thermodynamic stability and point to a scalable,additive route for designing amorphous materials that combine hyperstability with plasticity.
基金supported by 14th Five-Year Plan Key R&D Plan,Ministry of Science and Technology of the People’s Republic of China,2024YFB3409002National Natural Science Foundation of China,12302142+4 种基金HKUSTHKUST(GZ)Collaborative Research Scheme,G035Yangcheng Scholars Research Project-Leading Talent Training Project,2024312156Guangzhou-HKUST(GZ)Joint Funding Scheme,2023A03J0157Guangzhou Basic and Applied Basic Research Project,2024A04J4765Shenzhen Basic Research Project,JCYJ20220530114417040。
文摘Owing to the exceptional optoelectronic properties,metal halide perovskites have emerged as leading semiconductor materials for next-generation display technologies,providing perovskite light-emitting diodes(Pe LEDs)great potential for high-quality color displays with a wide color gamut and pure color emission.Although laboratory-scale Pe LEDs have achieved neartheoretical efficiencies,challenges such as achieving uniform large-area films,improving material stability,and enhancing patterning precision remain barriers to commercialization.This review presents a systematic analysis of scalable manufacturing and precision patterning strategies for Pe LEDs,focusing on their applications in large-area lighting and full-color displays.Fabrication methods are categorized into film deposition techniques(spin-coating,blade-coating,and thermal evaporation)and patterning strategies,including top-down(photolithography,laser/e-beam lithography,and nanoimprinting)and bottom-up(patterned crystal growth,inkjet printing,and electrohydrodynamic jet printing)approaches.In this review,we discuss the advantages and limitations of each strategy,highlight current challenges,and outlook possible pathways towards scalable,high-performance Pe LEDs for advanced optoelectronic applications.
基金the Chinese Academy of Sciences Research Center for Ecology and Environment of Central Asia(RCEECA),the construction and joint research for the China-Tajikistan“Belt and Road”Joint Laboratory on Biodiversity Conservation and Sustainable Use(2024YFE0214200)the Shanghai Cooperation Organization Partnership and International Technology Cooperation Plan of Science and Technology Projects(2023E01018,2025E01056)the Chinese Academy of Sciences President’s International Fellowship Initiative(PIFI)(2024VBC0006).
文摘Tajikistan represents a core region of the biodiversity hotspot in Central Asian mountains and has exceptional vascular plant diversity.However,the species diversity of the country faces urgent conservation challenges.There has been a lack of a comprehensive and multidimensional assessment to inform strategic conservation planning.Therefore,this study integrated 4 key biodiversity indices including species richness(SR),phylogenetic diversity(PD),threatened species richness(TSR),and endemic species richness(ESR)to map species diversity distribution patterns,identify conservation gaps,and elucidate their effects of climatic factors.This study revealed that species diversity shows a clear trend of decreasing from the western region to the eastern region of Tajikistan.The central–western mountains(specifically the Gissar-Darvasian and Zeravshanian regions)emerge as irreplaceable biodiversity hotspots.However,we found a severe spatial mismatch between these priority areas and the existing protected areas(PAs).Protection coverage for all hotspots was alarmingly low,ranging from 31.00%to 38.00%.Consequently,a critical 64.80%of integrated priority areas fall outside of the current PAs,representing a major conservation gap.This study identified precipitation seasonality and isothermality as the principal drivers,collectively explaining over 50.00%of the diversity variation and suggesting high vulnerability to hydrological shifts.Furthermore,we detected significant geographic sampling bias in the public biodiversity databases,with the most critical hotspot being systematically under-sampled.This study provides a robust scientific basis for conservation action,highlighting the urgent need to strategically expand PAs in the under-protected southwestern region and to mitigate critical sampling gaps through targeted data digitization and field surveys.These measures are indispensable for securing Tajikistan’s unique biodiversity and achieving the Kunming-Montreal Global Biodiversity Framework Target 3(“30×30 Protection”).
基金support from the National Natural Science Foundation of China(Grant No.61971256)。
文摘Wide-field mesoscopy provides the capabilities of cortex-wide field of view(FOV),cellular resolution and high frame rate for neuronal imaging in the mouse brain.However,inherent background fluorescence degrades the image quality and hinders neuronal signal extraction.To address this problem,we first introduce a cortex-wide,high-resolution lineillumination mesoscope with a moving slit designed for in vivo mouse brain imaging.This system achieves a 6.6×6.6 mm FOV,microscale cellular resolution,a high frame rate of 10 Hz,as well as the background rejection ability.Furthermore,we integrated patterned illumination into the system to enhance the background suppression.Experimental results show that the proposed system successfully captures neurodynamics in the living mouse brain.Compared with conventional wide-field mesoscopes,the cortex-wide patterned line-illumination mesoscope(PLIM)achieves a threefold increase in the signal-to-background ratio(SBR).With patterned illumination integrated,the SBR enhancement further reaches four-anda-half-fold.
