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盐城市1起病毒性脑炎疫情的肠道病毒Echovirus18VP1基因分子特征
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作者 李春香 陈国清 +3 位作者 王瑶 李峰 徐士林 李长城 《江苏预防医学》 CAS 2021年第1期13-16,共4页
目的对盐城市1起病毒性脑炎聚集性疫情分离的Echovirus18(E-18)型肠道病毒进行VP1基因分子进化特征分析。方法通过实时荧光RT-PCR方法,对2019年盐城市病毒性脑炎聚集性疫情标本进行肠道病毒的检测,对非EV71或CVA16其他肠道病毒进行分子... 目的对盐城市1起病毒性脑炎聚集性疫情分离的Echovirus18(E-18)型肠道病毒进行VP1基因分子进化特征分析。方法通过实时荧光RT-PCR方法,对2019年盐城市病毒性脑炎聚集性疫情标本进行肠道病毒的检测,对非EV71或CVA16其他肠道病毒进行分子分型,采用RT-PCR扩增E-18型肠道病毒VP1基因并测序,采用生物信息软件从核苷酸、氨基酸和分子进化3个层面进行分子特征分析。结果该起病毒性脑炎聚集性疫情是由E-18型肠道病毒感染引起,其6例病例;肛拭子肠道病毒核酸通用阳性4例,阳性率66.67%;均为轻症,全部治愈。4株E-18型肠道病毒株VP1基因片段均未见核苷酸的插入或者缺失,长度均为861bp、编码287个氨基酸,其核苷酸、氨基酸同源性分别为99.9%~100.0%和100.0%;与2019年E-18型手足口病盐城株(151/HFMD/JSYC/2019)VP1基因核苷酸、氨基酸同源性分别为99.5%~99.7%和100.0%;与原型株Metcalf VP1基因核苷酸、氨基酸同源性分别为79.0%~79.1%和93.4%。遗传进化树显示,2019年盐城市4株病毒性脑炎代表株与1株手足口病代表株聚集成簇,构成1个独立进化分支,属于C2基因亚群分支毒株。与原型株Metcalf相比,盐城市4株病毒性脑炎代表株涉及19个氨基酸位点的变异,变异率为6.62%,与1株手足口病代表株在VP1基因B-C loop区域发生了R84N氨基酸位点的变异。结论该起病毒性脑炎聚集疫情由E-18型肠道病毒引起,该病毒属于C2基因亚群优势进化分支,与本地手足口病代表株可能有共同的来源。 展开更多
关键词 病毒性脑炎 echovirus 18型肠道病毒 基因型 VP1基因 序列分析
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Molecular Epidemiology of Echovirus 18 Circulating in China's Mainland from 2015 to 2016 被引量:16
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作者 Xiangpeng Chen Tianjiao Ji +3 位作者 Jiayun Guo Wei Wang Wenbo Xu Zhengde Xie 《Virologica Sinica》 SCIE CAS CSCD 2019年第1期50-58,共9页
Echovirus 18(E18), a serotype of Enterovirus B(EV-B) species, is an important pathogen in aseptic meningitis. E18 had rarely been detected in China's Mainland, but became the predominant pathogen associated with v... Echovirus 18(E18), a serotype of Enterovirus B(EV-B) species, is an important pathogen in aseptic meningitis. E18 had rarely been detected in China's Mainland, but became the predominant pathogen associated with viral encephalitis(VE) and meningitis in Hebei province for the first time in 2015. To investigate the molecular epidemiology and genetic characteristics of E18 in China's Mainland, sixteen E18 strains from patient throat swabs with hand, foot, and mouth disease(HFMD) in six provinces in China collected between 2015 and 2016, and four E18 strains isolated from 18 patient cerebrospinal fluid specimens with VE in Hebei Province in 2015 were obtained and sequenced. Combined with the sequences from the GenBank database, we performed an extensive genetic analysis. Phylogenetic analysis of VP1 gene sequences revealed that all E18 strains from China's Mainland after 2015 belonged to subgenotype C2. There were no obvious specific differences in phylogenetic and variation analyses of E18 genome sequences between HFMD and VE/meningitis strains. Potential multiple recombination may have occurred in the 50-untranslated region and in the P2 and P3 nonstructural protein-encoding regions of E18 strains from China. The current E18 strains were potential multiplerecombinant viruses. Overall, these findings supported that E18 caused HFMD, VE, and meningitis, although there were no significant associations between clinical features and viral genomic characteristics. 展开更多
关键词 GENETIC characteristics echovirus 18 (E18) GENOME ENTEROVIRUS Recombination
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Echovirus serotypes circulating in Malaysia from 2002 to 2013 被引量:2
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作者 Jeyanthi Suppiah TS Saraswathy Subramaniam +2 位作者 Amry Khursany Ismail Apandi Yusof Zainah Sa'at 《Asian Pacific Journal of Tropical Medicine》 SCIE CAS 2016年第3期246-249,共4页
Objective:To identify the circulating serotypes of human echovinis in Malaysia from 2002 in 2013.Methods:A toial of 31 retrospective samples from non-polio acute flacid paralysis,hand-food-and-mouth disease,viral meni... Objective:To identify the circulating serotypes of human echovinis in Malaysia from 2002 in 2013.Methods:A toial of 31 retrospective samples from non-polio acute flacid paralysis,hand-food-and-mouth disease,viral meningitis and enterovirus cases were subjected to amplification of partial VPI gene by RT-PCR.Results:Sequencing and phylogeneiic analysis of the partial sequences identified presence of human echovinis and human coxsackie viruses.It was found that echovinis 11 was the commonly circulating serotype followed by echovinis6.echovinis 7.echovinis 3.echovinis 9.echovinis 30 and echovinis I in decreasing order.Additionally two types of human coxsackie virus isolates were detected which were coxsackie A24 and B3.Condusions:From the findings,there is a possibility that echovinis 11 is the predominant serotype among Malaysian patients with echovinis infection.However,a larger sample size will yield a more confident result to support this evidence.____________________ 展开更多
关键词 echovirus VPI MALAYSIA PHYLOGENETIC SEROTYPE
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Epidemiology and control measures of an outbreak of neonatal echovirus 11 infections in Guangdong, China: A retrospective analysis 被引量:1
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作者 Chunxiao Fang Xiaoming Zhang +2 位作者 Xuemin Huang Fengqin Xu Danyang Zhao 《Biosafety and Health》 CAS CSCD 2023年第4期227-232,共6页
The objective of this study was to investigate the outbreak of echovirus 11 (ECHO 11) infection in newborns at a hospital in Guangdong Province, China, and to study the effectiveness of prevention and control measures... The objective of this study was to investigate the outbreak of echovirus 11 (ECHO 11) infection in newborns at a hospital in Guangdong Province, China, and to study the effectiveness of prevention and control measures to infer the epidemiological characteristics of ECHO 11 and explore the effective measures for its prevention and control. We performed retrospective analyses of hospital records and laboratory test data. In this outbreak, ten cases of ECHO 11 infection were identified, of which nine cases were nosocomial infections. Most of the cases (90%) were severe, and three died. The onset time interval of 10 patients was 1-4 days, most of which occur in 1-2 days. There were eight (80%) males and two females (20%). The gestational age of the patients was 31 to 40 weeks (mean, 35+4 weeks;median, 35+4 weeks). The onset time was 3-26 days (average 9 days;median 8 days). The birth weights of the patients ranged from 1,650 g to 3,450 g (mean 2,385 g;median 2,250 g). We concluded that neonatal infection with ECHO 11 will lead to serious symptoms and high mortality, and is prone to outbreaks of nosocomial infection. We speculate that ECHO 11 is most likely to spread via contact transmission;however, we do not rule out the possibility of droplet transmission. Prevention and control measures can effectively prevent and control hospital enteroviral infections. 展开更多
关键词 echovirus 11 Nosocomial infection OUTBREAK EPIDEMIOLOGY Control measures
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Genetic characterizations and molecular epidemiology of human echovirus 30 isolated from Ningxia,China 被引量:1
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作者 Fang Yuan Xinfeng Wei +10 位作者 Xueping Ma Jiangtao Ma Xuemin Ma Xiaoqiang Sun Min Cao Juan Zhou Wei Zhang Hui Chen Rui Wang Jichen Li Qiang Sun 《Biosafety and Health》 CAS CSCD 2023年第6期346-354,共9页
In October 2017,a small outbreak of echovirus 30(E30)associated with aseptic meningitis in nine cases occurred at a primary school in the Ningxia Hui Autonomous Region.That year,we observed a significant increase in E... In October 2017,a small outbreak of echovirus 30(E30)associated with aseptic meningitis in nine cases occurred at a primary school in the Ningxia Hui Autonomous Region.That year,we observed a significant increase in E30 levels in an acute flaccid paralysis(AFP)case surveillance system.To investigate their phylogenetic relationships,we determined the whole genomic sequences of 12 strains isolated from aseptic meningitis cases,AFP cases,and healthy children.We found that the E30 strains circulating in Ningxia belong to two lineages(H and J).The strains isolated in 2010,2012,and 2016 belonged to the H lineage.In 2017,a new lineage,J,emerged as the dominant lineage.Phylogenetic trees were constructed based on the whole genome andP1,P2,andP3 regions;clustering with other types of enterovirus species B was found,suggesting that recombination events had occurred.The recombination sites were mainly in regions2B,2C,and3D.This study confirmed that the E30 strains in Ningxia in 2010,2012,and 2016 had different recombination patterns and were recombined with different enteroviruses.The 2017 epidemic E30 originated from another new lineage with a complex recombination pattern and formed an independent transmission chain in Ningxia. 展开更多
关键词 echovirus 30(E30) Complete genome sequence Molecular epidemiology
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Seroepidemiology of echovirus 30 in Korean children
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作者 Joo Young Lee Yumi Seo +2 位作者 Ui Yoon Choi Jong-Hyun Kim Jin Han Kang 《World Journal of Pediatrics》 SCIE CAS CSCD 2017年第6期611-614,共4页
Background:Although aseptic meningitis associated with echovirus type 30 has emerged as a global public health concern,no data have been reported on children's immune status against echovirus type 30.The current s... Background:Although aseptic meningitis associated with echovirus type 30 has emerged as a global public health concern,no data have been reported on children's immune status against echovirus type 30.The current study aimed to investigate the seropositivity among Korean children for antibodies against echovirus 30.Methods:Two hundred and fifty residual serum samples were collected at St.Paul's Hospital.Individuals were categorized by age into four groups:group 1 (3 months-2 years),group 2 (3-6 years),group 3 (7-10 years) and group 4 (11-15 years).Neutralizing antibodies against echovirus 30 were measured.Results:Seroprotective neutralizing antibodies against echovirus 30 were detected in 129 (49%) individuals.Seropositivity rates were 23%,48%,55% and 73% in groups 1-4,respectively.For antibody titers,1:256-1:512 was the highest neutralizing antibody titer range in group 2,while 1:1024-1:2048 in group 3 and 4.Among the seropositive individuals in group 3 and 4,6% and 12% had neutralizing antibody titers of 1:2048,respectively.Conclusions:The seropositivity rate increased significantly with age..The distribution of neutralizing antibody titers varied by age group,and higher ranges of neutralizing antibody titers were observed in higher age groups.These findings suggest high susceptibility to echovirus 30 infection in children younger than 2 years old.Echovirus 30 infection in childhood may have contributed to increased neutralizing antibody titers with age. 展开更多
关键词 echovirus 30 Korea SEROEPIDEMIOLOGY
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2009年云南省 Echo30分离株 KM/A363/09全基因组序列分析 被引量:1
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作者 白巍 陈俊英 +4 位作者 潘玥 朱艳菊 邵聪文 刘建生 马绍辉 《中华微生物学和免疫学杂志》 CAS CSCD 北大核心 2014年第5期388-392,共5页
目的:对2009年从中国云南省1名脑炎患儿粪便标本中分离到的Echo30云南分离株KM/A363/09进行全基因组测序和分析,了解该株病毒的遗传特性。方法设计针对Echo30引物,提取病毒RNA、RT-PCR扩增和产物直接测序获得全基因组序列,利用Gen... 目的:对2009年从中国云南省1名脑炎患儿粪便标本中分离到的Echo30云南分离株KM/A363/09进行全基因组测序和分析,了解该株病毒的遗传特性。方法设计针对Echo30引物,提取病毒RNA、RT-PCR扩增和产物直接测序获得全基因组序列,利用Geneious和Mega5.1软件进行核苷酸、氨基酸序列比对及其系统进化分析,应用RDP3和SimPlot3.5.1重组软件对序列进行重组分析。结果该分离株全基因组核苷酸序列长度为7425 bp,编码2194个氨基酸。其核苷酸和氨基酸序列与其原型株Bastianni的同源性分别为81.2%和95.8%;与其他Echo30型毒株的各区段核苷酸和氨基酸同源性分别为81.2%~88.6%和95.8%~97.8%;进化分析发现KM/A363/09毒株属于中国Echo30分支中的一支。而且发现KM/A363/09株基因序列在非结构区可能存在重组事件。结论云南分离株KM/A363/09属于中国Echo30分支中的一支,而中国分离株已经发生一定的进化。 展开更多
关键词 ECHO30 全基因序列 序列分析 echovirus 30
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用ELISA方法检测埃可病毒感染的特异性IgM抗体 被引量:7
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作者 刘民 李晓眠 +2 位作者 宋力 孟英韬 苏征 《中华实验和临床病毒学杂志》 CAS CSCD 北大核心 2002年第1期82-84,共3页
目的 研究埃可病毒感染的无菌性脑膜炎的诊断方法。方法 采用埃可病毒混合抗原包被酶标板 ,用抗人γ链处理人脑脊液标本 ,通过酶标二抗及底物显色 ,建立了抗埃可病毒IgM的间接ELISA检测方法 ;并用特异性试验、对照和重复性试验证实方... 目的 研究埃可病毒感染的无菌性脑膜炎的诊断方法。方法 采用埃可病毒混合抗原包被酶标板 ,用抗人γ链处理人脑脊液标本 ,通过酶标二抗及底物显色 ,建立了抗埃可病毒IgM的间接ELISA检测方法 ;并用特异性试验、对照和重复性试验证实方法的可靠性和实用性。结果 在临床诊断为无菌性脑膜炎的 78例患者脑脊液中有 14例阳性 (17 9% ) ,而细菌性脑膜炎的 36例患者脑脊液中仅有 1例阳性 (2 8% ) ,2 8例脑外伤患者脑脊液均为阴性。ELISA阳性的 5份脑脊液中和试验 4例阳性 ,而ELISA阴性的 5份脑脊液中和试验均为阴性 ;该方法与脊髓灰质炎病毒、柯萨奇A组病毒 7型和柯萨奇B组病毒 1~ 6型无交叉反应 ;ELISA阳性的 6份标本经特异性IgM破坏和阻断试验均全部转为阴性。结论 本方法快速、简便、可靠 。 展开更多
关键词 酶联免疫吸附测定 埃可病毒感染 无菌性脑膜炎 IGM抗体 ELISA
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