Direct-fed microbials(DFM) are considered as a promising technique to improve animal productivity without affecting animal health or harming the environment.The potential of three bacterial DFM to reduce methane(CH4)e...Direct-fed microbials(DFM) are considered as a promising technique to improve animal productivity without affecting animal health or harming the environment.The potential of three bacterial DFM to reduce methane(CH4)emissions,modulate ruminal fermentation,milk production and composition of primiparous dairy cows was examined in this study.As previous reports have shown that DFM respond differently to different diets,two contrasting diets were used in this study.Eight lactating primiparous cows were randomly divided into two groups that were fed a corn silage-based,high-starch diet(HSD) or a grass silage-based,high-fiber diet(HFD).Cows in each dietary group were randomly assigned to four treatments in a 4 × 4 Latin square design.The bacterial DFM used were selected for their proven CH4-reducing effect in vitro.Treatments included control(without DFM) and 3 DFM treatments: Propionibacterium freudenreichii 53-W(2.9 × 10^10 colony forming units(CFU)/cow per day),Lactobacillus pentosus D31(3.6 × 10^11 CFU/cow per day) and Lactobacillus bulgaricus D1(4.6 × 10^10 CFU/cow per day).Each experimental period included 4 weeks of treatment and 1 week of wash-out,with measures performed in the fourth week of the treatment period.Enteric CH4 emissions were measured during 3 consecutive days using respiration chambers.Rumen samples were collected for ruminal fermentation parameters and quantitative microbial analyses.Milk samples were collected for composition analysis.Body weight of cows were recorded at the end of each treatment period.Irrespective of diet,no mitigating effect of DFM was observed on CH4 emissions in dairy cows.In contrast,Propionibacterium increased CH4 intensity by 27%(g CH4/kg milk) in cows fed HSD.There was no effect of DFM on other fermentation parameters and on bacterial,archaeal and protozoal numbers.Similarly,the effect of DFM on milk fatty acid composition was negligible.Propionibacterium and L.pentosus DFM tended to increase body weight gain with HSD.We conclude that,contrary to the effect previously observed in vitro,bacterial DFM Propionibacterium freudenreichii 53-W,Lactobacillus pentosus D31 and Lactobacillus bulgaricus D1 did not alter ruminal fermentation and failed to reduce CH4 emissions in lactating primiparous cows fed high-starch or high-fiber diets.展开更多
Direct-fed microbials(DFMs)are feed additives containing live naturally existing microbes that can benefit animals’health and production performance.Due to the banned or strictly limited prophylactic and growth promo...Direct-fed microbials(DFMs)are feed additives containing live naturally existing microbes that can benefit animals’health and production performance.Due to the banned or strictly limited prophylactic and growth promoting usage of antibiotics,DFMs have been considered as one of antimicrobial alternatives in livestock industry.Microorganisms used as DFMs for ruminants usually consist of bacteria including lactic acid producing bacteria,lactic acid utilizing bacteria and other bacterial groups,and fungi containing Saccharomyces and Aspergillus.To date,the available DFMs for ruminants have been largely based on their effects on improving the feed efficiency and ruminant productivity through enhancing the rumen function such as stabilizing ruminal pH,promoting ruminal fermentation and feed digestion.Recent research has shown emerging evidence that the DFMs may improve performance and health in young ruminants,however,these positive outcomes were not consistent among studies and the modes of action have not been clearly defined.This review summarizes the DFM studies conducted in ruminants in the last decade,aiming to provide the new knowledge on DFM supplementation strategies for various ruminant production stages,and to identify what are the potential barriers and challenges for current ruminant industry to adopt the DFMs.Overall literature research indicates that DFMs have the potential to mitigate ruminal acidosis,improve immune response and gut health,increase productivity(growth and milk production),and reduce methane emissions or fecal shedding of pathogens.More research is needed to explore the mode of action of specific DFMs in the gut of ruminants,and the optimal supplementation strategies to promote the development and efficiency of DFM products for ruminants.展开更多
Direct-fed microbials（DFM）, generally regarded as safe status, are successfully used in improving rumen ecology, gastro-intestinal health, feed efficiency, milk production and growth rate in ruminants. On the other ...Direct-fed microbials（DFM）, generally regarded as safe status, are successfully used in improving rumen ecology, gastro-intestinal health, feed efficiency, milk production and growth rate in ruminants. On the other hand, methanogenesis in rumen, which accounts for a significant loss of ruminant energy and increased greenhouse gas in environment, is of great concern, therefore, use of DFM for improving productivity without compromising the animal health and ecological sustainability is encouraged. The present study was conducted to investigate the methane reducing potential of bacteriocinogenic strain Pediococcus pentosaceus-34. Since, the culture showed no hemolysis on blood agar and DNase activity, hence, it was considered to be avirulent in nature, a prerequisite for any DFM. The culture also showed tolerance to pH 5.0 for 24 h with 0.5% organic acid mixture, whereas when given a shock for 2 h at different p H and organic acids concentrations, it showed growth at pH 3.0 and 4.0 with 0.1 and 1.0% organic acids, respectively, as having good animal probiotics attributes. The total gas production was significantly（P〈0.05） higher in live pedicoccal culture（LPC） and dead pedicoccal culture（DPC） both with wheat straw, when compared to the control. In sugarcane bagasse, gas production was significantly lower（P〈0.05） with LPC compared to the control and DPC both. Methane was reduced by the inclusion of LPC in sugarcane bagasse（0.07 mL CH4 mg–1 dry matter digestibility） with no effect on other rumen fermentation parameters. However, with wheat straw and LPC total gas, in vitro dry matter digestibility, total volatile fatty acids increased significantly but no reduction in methane production was observed in comparison to the control. Therefore, further research is warranted in this direction, if the bacteriocinogenic strains can be used as DFM for ruminants to improve the ruminant productivity.展开更多
Objective: To evaluate the ability of Bacillus spp. as direct-fed microbials(DFM) to biodegrade al atoxin B1(AFB1) by using an in vitro digestive model simulating in vivo conditions.Methods: Sixty-nine Bacillus isolat...Objective: To evaluate the ability of Bacillus spp. as direct-fed microbials(DFM) to biodegrade al atoxin B1(AFB1) by using an in vitro digestive model simulating in vivo conditions.Methods: Sixty-nine Bacillus isolates were obtained from intestines, and soil samples were screened by using a selective media method against 0.25 and 1.00 μg/m L of AFB1 in modii ed Czapek-Dox medium. Plates were incubated at 37 °C and observed every two days for two weeks. Physiological properties of the three Bacillus spp. candidates were characterized biochemically and by 16 S r RNA sequence analyzes for identii cation. Tolerance to acidic p H, osmotic concentrations of Na Cl, bile salts were tested, and antimicrobial sensitivity proi les were also determined. Bacillus candidates were individually sporulated by using a solid fermentation method and combined. Spores were incorporated into 1 of 3 experimental feed groups: 1) Negative control group, with unmedicated starter broiler feed without AFB1; 2) Positive control group, with negative control feed contaminated with 0.01% AFB1; 3) DFM treated group, with positive control feed supplemented with 109 spores/g. After digestion time(3:15 h), supernatants and digesta were collected for high-performance liquid chromatography l uorescence detection analysis by triplicate.Results: Three out of those sixty-nine DFM candidates showed ability to biodegrade AFB1 in vitro based on growth as well as reduction of l uorescence and area of clearance around each colony in modii ed Czapek-Dox medium which was clearly visible under day light after 48 h of evaluation. Analysis of 16S-DNA identii ed the strains as Bacillus amyloliquefaciens, Bacillus megaterium and Bacillus subtilis. The three Bacillus strains were tolerant to acidic conditions(p H 2.0), tolerant to a high osmotic pressure(Na Cl at 6.5%), and were able to tolerate 0.037% bile salts after 24 h of incubation. No signii cant dif erences(P > 0.05) were observed in the concentrations of AFB1 in neither the supernatants nor digesta samples evaluated by highperformance liquid chromatography with l uorescence detection between positive control or DFM treated groups. Conclusions: In vitro digestion time was not enough to confirm biodegradation of AFB1. Further studies to evaluate the possible biodegradation ef ects of the BacillusDFM when continuously administered in experimentally contaminated feed with AFB1, are in progress.展开更多
Three experiments were conducted to evaluate direct-fed microbial (<strong>DFM</strong>) supplementation on live performance, carcass characteristics, and fecal shedding of <em>E. coli</em> in ...Three experiments were conducted to evaluate direct-fed microbial (<strong>DFM</strong>) supplementation on live performance, carcass characteristics, and fecal shedding of <em>E. coli</em> in feedlot steers. In Exp. 1, 400 steers (BW = 348 kg) were assigned to treatments: <strong>CON</strong> = lactose carrier only, <strong>BOV</strong> =<em> P. freudenreichii </em>(NP24) +<em> L. acidophilus</em> (NP51), <strong>BOVD</strong> = <em>P. freudenreichii</em> (NP24) +<em> L. acidophilus</em> (NP51), and <strong>COMB</strong> = BOV fed for the first 101 d on feed, followed by BOVD for the final 28 d prior to harvest. In Exp. 2 (n = 1800;BW = 354 kg) and Exp. 3 (n = 112;BW = 397 kg), steers were utilized in a randomized complete block design and assigned to DFM treatments using low dose and high dose, respectively. Fecal samples were collected prior to harvest and analyzed for <em>E. coli</em> serogroups. In Exp. 1, DFM reduced (P < 0.01) the concentration of<em> E. coli</em> O157. Prevalence of O157 was reduced by BOVD supplementation in Exp. 2 and 3 (P < 0.01 and P = 0.08, respectively), and concentration of <em>E. coli</em> O157 in positive samples was reduced in both experiments where enumeration was performed (P ≤ 0.02). Weighted mean differences across the three experiments were equal to a 33% reduction in the prevalence of E. coli O157:H7 in BOVD treated cattle. A significant reduction in prevalence of O26, O45, O103, and O121 was observed in Exp. 2 (P ≤ 0.03). These results indicate that high levels of <em>L. acidophilus</em> (NP51) may represent an effective pre-harvest food safety intervention to reduce fecal shedding of several <em>E. coli</em> serogroups.展开更多
Manipulating the gastrointestinal microbial ecosystem to enhance animal performance and reproductive responses has been one of the main goals of animal science researchers and veterinarians.Recent restrictions to the ...Manipulating the gastrointestinal microbial ecosystem to enhance animal performance and reproductive responses has been one of the main goals of animal science researchers and veterinarians.Recent restrictions to the use of antimicrobials as growth promoters led researchers to seek alternative practices that can show promise both from the standpoint of efficacy as well as from the practical and economic aspects.One of the alternatives that surfaced as very promising in the last few decades is the use of direct-fed microbials （DFM） as a means to modulate the effects of the gastrointestinal microbiome on the host immune status, health and productivity.展开更多
The Earth's environment is undergoing significant transformation due to mining,pollution,and climate change.Although mining is essential for economic development,it contributes significantly to the release of pote...The Earth's environment is undergoing significant transformation due to mining,pollution,and climate change.Although mining is essential for economic development,it contributes significantly to the release of potentially harmful elements(PHEs)that threaten human health and destabilize microbial communities.Anthropogenic climate change,driven by greenhouse gas emissions,alters water availability and soil composition,further affecting ecosystem balance and microbial diversity.This review aggregates findings from studies covering the last two decades to assess how mining pollution and climate change impact microbial diversity,their adaptation mechanisms,and the associated health risks.It reveals that environmental stressors favour resistant microbial taxa while eliminating sensitive species,thereby reshaping microbial ecosystems.Microorganisms demonstrate genetic,biochemical,and physiological adaptations that enable them to survive in polluted or changing environments,often resulting in a higher prevalence of pathogenic and antibiotic-resistant strains.These variations in microbial dynamics contribute to health challenges such as respiratory infections,foodborne illnesses,and increased exposure in children and immune-compromised individuals.The review highlights the linkages between environmental degradation,microbial ecology,and human health,underscoring the need for integrative policies and interventions to mitigate long-term risks,support microbial ecosystem stability,promote sustainable health and agricultural outcomes.展开更多
The gut microbiota:The human body is colonized by a diverse and complex microbial community–including bacteria,viruses,archaea,and unicellular eukaryotes–that plays a central role in human wellbeing.Indeed,microbiot...The gut microbiota:The human body is colonized by a diverse and complex microbial community–including bacteria,viruses,archaea,and unicellular eukaryotes–that plays a central role in human wellbeing.Indeed,microbiota is crucial for several functions,including host metabolism,physiology,maintenance of the intestinal epithelial integrity,nutrition,and immune function,earning it the designation of a“vital organ”(Guinane and Cotter,2013).展开更多
To explore the adaptive mechanisms of the partial nitritation-anammox(PNA)process under high salinity stress during kitchen wastewater treatment,focusing on their physiological and molecular responses through metageno...To explore the adaptive mechanisms of the partial nitritation-anammox(PNA)process under high salinity stress during kitchen wastewater treatment,focusing on their physiological and molecular responses through metagenomic analysis.An airlift inner-circulation partition bioreactor(AIPBR)was developed,featuring an inner cylinder and a flow guide tube to create distinct oxygen gradients,facilitating the study of microbial adaptation under varying salt conditions.The AIPBR was operated with synthetic wastewater containing ammonium concentrations of 1800±100 mg/L and salinity gradients ranging from 1 to 10 g/L,followed by a fixed salinity period at 6 g/L,with ammonium concentrations approximately 850 mg/L.High-throughput metagenomic analysis revealed shifts in functional genes and metabolic pathways in response to salinity stress.Anammox bacteria adapted by enriching genes involved in the synthesis of osmoprotective compounds and activating energy-producing pathways like the tricarboxylic acid cycle(TCA).These adaptations,along with modifications in membrane composition,were essential for sustaining system stability under elevated salinity.Under prolonged high salinity stress,anaerobic ammonium oxidizing(AnAOB)exhibited improved salt tolerance,maintaining a total nitrogen removal efficiency above 85%and stabilizing after an adaptation phase.The metagenomic data revealed a marked enrichment of genes associated with ion transport,stress response mechanisms,and DNA repair pathways.Changes in microbial community composition favored salt-tolerant species,supporting system stability.These findings highlight the applicability of the developed bioreactor for scaling up the PNA process to handle high-salinity wastewater,providing a promising avenue for sustainable nitrogen removal in challenging environments.展开更多
Soil water content and salinity critically regulate soil microbial composition,plant community structure,and ecosystem multifunctionality(EMF)in semi-arid grasslands.However,the mechanisms through which drought(D),sal...Soil water content and salinity critically regulate soil microbial composition,plant community structure,and ecosystem multifunctionality(EMF)in semi-arid grasslands.However,the mechanisms through which drought(D),saline-alkaline(SA),and their combined(DSA)stress influence these ecological components remain poorly understood.This study investigated these mechanisms along natural gradients in a semi-arid grassland of China by analyzing soil physical-chemical properties,microbial communities,and vegetation characteristics.The results showed that as the environmental stress shifted from the D group to the DSA group and then to the SA group,soil electrical conductivity significantly increased,while urease and phosphatase activities significantly decreased.Soil organic carbon,total nitrogen,total phosphorus,and microbial biomass carbon and nitrogen were lower in the D and SA groups than in the DSA group.Meanwhile,plant biomass showed an increasing trend along the treatment gradient,primarily driven by dominant species,while plant diversity did not exhibit significant differences.Further analysis identified the soil water content and salinity as the key determinants of soil microbial diversity and community complexity.Soil enzyme activities exhibited contrasting relationships with microbial composition,correlating positively with the richness of bacterial amplicon sequence variants(ASVs)but negatively with the richness of fungal ASVs.Notably,microbial biomass,which varied significantly across different groups,emerged as a key predictor of changes in EMF,with its critical role confirmed through structural equation modeling.These findings collectively elucidate the responses of ecological communities to synergistic soil hydro-saline stress in semi-arid ecosystems,while highlighting the critical role of microbial biomass in maintaining EMF.展开更多
Background The enteric methane inhibitor 3-nitrooxypropanol(3-NOP)inhibits the key enzyme in ruminal methanogenesis,but whether short-term(ST)and long-term(LT)dietary supplementation has similar effects on rumen micro...Background The enteric methane inhibitor 3-nitrooxypropanol(3-NOP)inhibits the key enzyme in ruminal methanogenesis,but whether short-term(ST)and long-term(LT)dietary supplementation has similar effects on rumen microbiota in beef cattle and how microbes change after 3-NOP withdrawal have not been studied.This study investigated changes in rumen bacteria,archaea,and protozoa after ST and LT dietary supplementation and removal of 3-NOP using metataxonomic analysis.Results A total of 143 rumen samples were collected from two beef cattle studies with 3-NOP supplementation.The ST study(95 samples)used eight ruminally cannulated beef cattle in a 4×4 Latin square design with four 28-d of 3-NOP treatments[mg/kg of dry matter(DM)]:control:0,low:53,med:161,and high:345.The LT study(48 samples)was a completely randomized design with two 3-NOP treatments[control:0,and high:280 mg/kg of DM)fed for 112-d followed by a 16-d withdrawal(without 3-NOP).Bacterial and archaeal communities were significantly affected by 3-NOP supplementation but limited effects on protozoal communities were observed.Under ST supplementation,the relative abundances of Prevotella,Methanobrevibacter(Mbb.)ruminantium,Methanosphaera sp.ISO3-F5,and Entodinium were increased(Q<0.05),whereas those of Mbb.gottschalkii and Epidinium were decreased(Q<0.05)with 3-NOP supplementation.In LT study,relative abundances of Mbb.ruminantium,and Methanosphaera sp.Group5 were increased(Q<0.05),while those of Saccharofermentans and Mbb.gottschalkii were decreased(Q<0.05)with 3-NOP supplementation.Comparison between 3-NOP supplementation and the withdrawal revealed increased relative abundances of Clostridia UCG-014 and Oscillospiraceae NK4A214 group and decreased those of Eubacterium nodatum group and Methanosphaera sp.Group5(P<0.05)after 3-NOP withdrawal.Further comparison of rumen microbiota between control and 3-NOP withdrawal showed significantly higher(P=0.029)relative abundances of Eggerthellaceae DNF00809,p-1088-a5 gut group,and Family XII UCG-001 in control group while no significant differences were detected for archaea and protozoa.Microbial network analysis revealed that microbial interactions differed by both 3-NOP dose and durations.Conclusions Both ST and LT supplementation affected overall rumen microbial profile,with individual microbial groups responded to 3-NOP supplementation differently.After 3-NOP withdrawal,not all microbes showed recovery,indicating that the 3-NOP driven shifts were only partially reversible.These findings provide an understanding of the effects of 3-NOP on rumen microbial communities and their adaptability to methane mitigation strategies.展开更多
Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a po...Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a potential role during this critical transitional period.However,its involvement in post-weaning diarrhea remains poorly understood.Here,we aim to elucidate the role and underlying mechanisms of Prevotella in alleviating diarrhea in weaned piglets.Results To model unsanitary housing conditions,piglets were housed in uncleaned pens containing residual fecal matter from previous occupants and exposed to cold stress by maintaining the ambient temperature at 19℃,below the optimal 28℃.Under these conditions,piglets were orally administered either a blank medium(CON,n=10×2)or Prevotella copri at 1×10^(8)CFU(Pc,n=10×2)on d 1,3,and 5.After 28 d,cold stress induced a diarrhea incidence of 33.45%in the CON group,while P.copri supplementation significantly reduced the diarrhea rate to 19.73%.Treatment with P.copri markedly improved intestinal morphology in the small intestine,decreased serum levels of lipopolysaccharide(LPS)and intestinal fatty acid-binding protein(i-FABP),and enhanced total antioxidant capacity(T-AOC)and catalase(CAT)activity.Quantitative PCR and 16S rRNA gene sequencing revealed that P.copri significantly increased the colonic abundance of Prevotella,reshaping both the composition and functional profile of the gut microbiota.Moreover,P.copri enhanced the modularity and robustness of microbial ecological networks.Untargeted metabolomic profiling of colonic contents revealed a significant enrichment of metabolites involved in the arachidonic acid pathway following P.copri supplementation.In parallel,untargeted metabolomics of P.copri culture supernatants identified differential metabolic pathways including metabolic pathways,biosynthesis of secondary metabolites,and biosynthesis of antibiotics.In vitro assays demonstrated that P.copri-derived metabolites inhibited the growth of three common porcine intestinal pathogens.Furthermore,both P.copri metabolites and arachidonic acid enhanced intestinal barrier integrity and suppressed TNF-α-induced inflammation and apoptosis in Caco-2 cells through activation of the AHR–Nrf2 signaling pathway.Conclusions These findings highlight the role of P.copri in maintaining gut homeostasis and provide new insights into microbiota-based interventions for early-life intestinal disorders.展开更多
Land-use change and associated landscape pattern modifications are key drivers of biodiversity dynamics.However,the influence of landscape heterogeneity on soil microbial diversity remains poorly understood.This study...Land-use change and associated landscape pattern modifications are key drivers of biodiversity dynamics.However,the influence of landscape heterogeneity on soil microbial diversity remains poorly understood.This study analyzed soil microbial communities(bacteria and fungi)and soil properties(organic carbon,pH,available potassium,nitrogen,and phosphorus)across 74 sites in Hainan,China,covering six land-use types(rubber,areca,banana,farmland,longan,and mango).We evaluated the effects of both landscape composition(habitat coverage and patch richness)and configuration heterogeneity(patch density and largest patch index)on soil microbial community structure and diversity.Results show that land-use types and landscape patterns weakly affect microbial composition but strongly shape diversity in a taxon-specific way.Bacterial Chao1 richness and fungal Shannon diversity varied significantly among land-use types,mainly due to soil available phosphorus.Rubber coverage positively correlated with bacterial and fungal diversity,while the largest patch index negatively affected only fungal diversity.Available phosphorus reduced this negative effect.This study demonstrates that land-use change and landscape heterogeneity differentially influence soil microbial composition and diversity,with available phosphorus emerging as a key determinant.Our findings highlight the need for careful landscape planning and soil nutrient management to preserve soil microbial diversity.展开更多
Recently,Prevotella spp.,a major genus of gram-negative commensal bacteria in humans,have emerged as a key microbial contributor to host metabolism due to its ability to ferment dietary fibers,produce beneficial short...Recently,Prevotella spp.,a major genus of gram-negative commensal bacteria in humans,have emerged as a key microbial contributor to host metabolism due to its ability to ferment dietary fibers,produce beneficial short-chain fatty acids,and influence immune responses.However,their diversity and functional differences have created challenges for their development and therapeutic use.Recent studies have shown that specific Prevotella species,such as P.copri,P.intestinalis,and P.histicola,can strengthen gut barrier integrity and reduce metabolic imbalances.Notably,Prevotella populations can be increased through high-fiber or herbal-based treatments.Traditional herbal medicines,including fiber-rich decoctions,also demonstrate the potential to boost endogenous Prevotella communities,enhance microbial fermentation,and improve glucose and lipid balance.This perspective examines the context-dependent roles of Prevotella spp.,with emphasis on the functional heterogeneity of key species such as P.copri,suggests a framework for combining herbal modulation with species-level microbiota profiling,and outlines a research plan to explore microbe-herb synergy in treating obesity,type 2 diabetes,and related metabolic disorders.This strategy offers a new,ecology-based approach to complement standard metabolic interventions.展开更多
Background:The Colorectal Cancer(CRC)pathogenesis and therapeutic efficacy are influenced by the gut microbiome,making it a promising biomarker for predicting treatment responses and adverse effects.This systematic re...Background:The Colorectal Cancer(CRC)pathogenesis and therapeutic efficacy are influenced by the gut microbiome,making it a promising biomarker for predicting treatment responses and adverse effects.This systematic review aims to outline the gut microbiome composition in individuals with CRC undergoing the same therapeutic regimen and evaluate interindividual microbiome profile variations to better understand how these differences may influence therapeutic outcomes.Methods:Key studies investigating the microbiome’s role in therapeutic approaches for CRC were searched in both PubMed and Cochrane databases on 12 and 22 March 2025,respectively.Eligible studies included free full-text English-language randomized clinical trials and human observational studies reporting on gut microbiome composition and treatment outcomes.RoB 2 and ROBINS-I were employed in the evaluation of bias for randomized trials and observational studies,respectively.Data extracted was narratively analyzed.Results:Six studies involving a total of 361 individuals were included.Therapeutic interventions,either standard treatments and/or those targeting the gut microbiome,generally increased probiotic taxa and reduced pro-carcinogenic bacteria.However,no consistent pattern of improved clinical outcomes was observed,suggesting that treatment mechanisms,the tumor’s nature,and individual characteristics play critical roles in microbiome modulation.Conclusion:The gut microbiome holds significant potential in clinical settings.Nonetheless,further research is needed to better understand its functional aspects and to consider the influence of treatment mechanisms,the tumor’s nature,and individual characteristics as modulators,in order to optimize clinical outcomes.展开更多
Microbial contamination and the resulting corrosion in aircraft fuel system pose a serious threat to flight safety.Revealing the corrosion behavior and mechanism of fuel-degrading microorganisms on tank materials is c...Microbial contamination and the resulting corrosion in aircraft fuel system pose a serious threat to flight safety.Revealing the corrosion behavior and mechanism of fuel-degrading microorganisms on tank materials is crucial for developing effective mitigation strategies.In this study,the corrosion mechanisms of two representative hydrocarbon-degrading bacteria,Alcanivorax dieselolei and Microbacterium oxydans,toward AA7075 aluminum alloy,were systematically investigated.A combination of biofilm characterization,electrochemical testing,and surface/corrosion product characterization was employed.Both strains markedly accelerated the corrosion of AA7075,as evidence by the progressive decrease in polarization resistance and the pronounced rightward shift of the potentiodynamic polarization curves.Moreover,the difference between the pitting potential(E_(pit))and the corrosion potential(E_(corr))(ΔE=E_(pit)‒E_(corr))decreased due to microbial activities,indicating a pronounced tendency toward accelerated pitting corrosion.Corrosion morphology analysis revealed that both microbes promoted localized pitting corrosion.Furthermore,analysis of aviation kerosene composition indicated that both bacteria accelerated the degradation of C8 and C9 alkanes.These findings highlight the multiple threats of microbial contamination,material degradation,and fuel quality deterioration in fuel systems and underscore the need for targeted protection strategies for marine aviation operations.展开更多
This study establishes and validates a method for the precise quantification of aquatic microbial loads using microbial diversity absolute quantitative sequencing.By adding synthetic spike-in DNA to water samples from...This study establishes and validates a method for the precise quantification of aquatic microbial loads using microbial diversity absolute quantitative sequencing.By adding synthetic spike-in DNA to water samples from the Dahei River prior to DNA extraction and 16S rRNA gene sequencing,it generates standard curves to convert sequencing data into absolute microbial copy numbers.The method,which is proved highly accurate(R^(2)>0.99),reveals a clear contrast between the river sites:the upstream community has not only a significantly higher total microbial load but also a completely different makeup of species compared to the downstream site.This approach effectively overcomes the limitations of relative abundance analysis,providing a powerful tool for environmental monitoring,and proposes key steps for future standardization to ensure data comparability and integration.展开更多
Objective Evidence suggests that depleted gut microbialα-diversity is associated with hypertension;however,whether metabolic markers affect this relationship remains unknown.We aimed to determine the potential metabo...Objective Evidence suggests that depleted gut microbialα-diversity is associated with hypertension;however,whether metabolic markers affect this relationship remains unknown.We aimed to determine the potential metabolites mediating the associations ofα-diversity with blood pressure(BP)and BP variability(BPV).Methods Metagenomics and plasma targeted metabolomics were conducted on 523 Chinese participants from the MetaSalt study.The 24-hour,daytime,and nighttime BP and BPV were calculated based on ambulatory BP measurements.Linear mixed models were used to characterize the relationships betweenα-diversity(Shannon and Chao1 index)and BP indices.Mediation analyses were performed to assess the contribution of metabolites to the observed associations.The influence of key metabolites on hypertension was further evaluated in a prospective cohort of 2,169 participants.Results Gut microbial richness(Chao1)was negatively associated with 24-hour systolic BP,daytime systolic BP,daytime diastolic BP,24-hour systolic BPV,and nighttime systolic BPV(P<0.05).Moreover,26 metabolites were strongly associated with richness(Bonferroni P<0.05).Among them,four key metabolites(imidazole propionate,2-hydroxy-3-methylbutyric acid,homovanillic acid,and hydrocinnamic acid)mediated the associations between richness and BP indices(proportions of mediating effects:14.1%–67.4%).These key metabolites were also associated with hypertension in the prospective cohort.For example,each 1-standard deviation unit increase in hydrocinnamic acid significantly reduced the risk of prevalent(OR[95%CI]=0.90[0.82,0.99];P=0.03)and incident hypertension(HR[95%CI]=0.83[0.71,0.96];P=0.01).Conclusion Our results suggest that gut microbial richness correlates with lower BP and BPV,and that certain metabolites mediate these associations.These findings provide novel insights into the pathogenesis and prevention of hypertension.展开更多
Organic management practices and spontaneous fermentations have become focal points in wine research due to increasing consumer interest in healthy foods and sustainable agriculture.In this study,‘Cabernet Sauvignon&...Organic management practices and spontaneous fermentations have become focal points in wine research due to increasing consumer interest in healthy foods and sustainable agriculture.In this study,‘Cabernet Sauvignon'grapes sourced from organic and conventional management vineyard(OMV/CMV)in the Ningxia region were subjected to spontaneous fermentation.The microbial,oenological,and aroma profiles of grape must and resulting wines were assessed using high-throughput sequencing(HTS),high-performance liquid chromatography(HPLC),gas chromatography with mass spectrometry(GC-MS),and sensory evaluations.Network analysis was applied to explore relationships among microorganisms,volatile compounds,and aroma attributes.Results showed that organic management significantly increased microbial species richness,α-diversity,and the variety and concentration of aroma compounds,favoring the production of natural wines with complex aroma profiles.Relative abundance of Saccharomyces in OMV reduced,promoting the prevalence of other yeast species during fermentation.Bacterial succession in wines from OMV remained stable,with Pantoea as the dominant genus.Among oenological parameters,OMV wines significantly induced glycerol content,while reduced total acidity,tartaric acid,and citric acid content.These wines exhibited significantly higher levels of fermentative(+16%)and varietal(+72%)volatiles,as well as enhanced floral and sweet fruity aromas,along with distinct nail polish and vegetal notes.Additionally,Saccharomyces,Hanseniaspora,Metschnikowia,and Pantoea were strongly correlated with specific volatile compounds and aroma characteristics.This study provides valuable data that can inform spontaneous fermentation practices and guide vineyard management for natural wine production.展开更多
Sedimentary microbial communities play an important role in driving biogeochemical cycles in river ecosystems.The Yellow River is one of the rivers with the highest turbidity over the world.However,limited is known ab...Sedimentary microbial communities play an important role in driving biogeochemical cycles in river ecosystems.The Yellow River is one of the rivers with the highest turbidity over the world.However,limited is known about the microbial variation and its influencing factors in the Yellow River.In this study,we examined the microbial communities and their influencing factors in the sediment of Upper and Mid–Lower reaches of the Yellow River.The results showed that Gammaproteobacteria were most dominant(with Hydrogenophilaceae being the predominant family)in the studied Yellow River sediments.Phyla of Deltaproteobacteria,Nitrospirae and family of Bacillaceae,Geobaceraceae were more abundant in the Mid–Lower reaches than in the Upper reaches,while phyla of Gammaproteobacteria,Verrucomicrobia and family of Caldilineaceae,Llumatobacteraceae were more abundant in the Upper reaches than in the Mid–Lower reaches.The microbial communities were predominantly affected by nutrient factors(such as NH_(4)^(+),TN and TP),followed by the spatial and the content of Chla in the Mid–Lower reaches,while they were by predominantly affected by spatial factors,followed by the nutrient factors and the content of Chla in the Upper reaches.The dominant microbial taxa were mostly correlated with COD,NH_(4)^(+),TP and temperature,but they responded differently to these physiochemical factors between the Upper and Mid–Lower reaches.In summary,the sedimentary microbial communities differ between the Upper and Mid–Lower reaches and respond differently to the environmental and spatial factors in the sediment of the Yellow River.展开更多
基金Funding for the study was from Danone Research,Palaiseau,France.MP and DM acknowledge support from METHLAB a FACCE ERA-GAS project in collaboration with the French National Research Agency(ANR)
文摘Direct-fed microbials(DFM) are considered as a promising technique to improve animal productivity without affecting animal health or harming the environment.The potential of three bacterial DFM to reduce methane(CH4)emissions,modulate ruminal fermentation,milk production and composition of primiparous dairy cows was examined in this study.As previous reports have shown that DFM respond differently to different diets,two contrasting diets were used in this study.Eight lactating primiparous cows were randomly divided into two groups that were fed a corn silage-based,high-starch diet(HSD) or a grass silage-based,high-fiber diet(HFD).Cows in each dietary group were randomly assigned to four treatments in a 4 × 4 Latin square design.The bacterial DFM used were selected for their proven CH4-reducing effect in vitro.Treatments included control(without DFM) and 3 DFM treatments: Propionibacterium freudenreichii 53-W(2.9 × 10^10 colony forming units(CFU)/cow per day),Lactobacillus pentosus D31(3.6 × 10^11 CFU/cow per day) and Lactobacillus bulgaricus D1(4.6 × 10^10 CFU/cow per day).Each experimental period included 4 weeks of treatment and 1 week of wash-out,with measures performed in the fourth week of the treatment period.Enteric CH4 emissions were measured during 3 consecutive days using respiration chambers.Rumen samples were collected for ruminal fermentation parameters and quantitative microbial analyses.Milk samples were collected for composition analysis.Body weight of cows were recorded at the end of each treatment period.Irrespective of diet,no mitigating effect of DFM was observed on CH4 emissions in dairy cows.In contrast,Propionibacterium increased CH4 intensity by 27%(g CH4/kg milk) in cows fed HSD.There was no effect of DFM on other fermentation parameters and on bacterial,archaeal and protozoal numbers.Similarly,the effect of DFM on milk fatty acid composition was negligible.Propionibacterium and L.pentosus DFM tended to increase body weight gain with HSD.We conclude that,contrary to the effect previously observed in vitro,bacterial DFM Propionibacterium freudenreichii 53-W,Lactobacillus pentosus D31 and Lactobacillus bulgaricus D1 did not alter ruminal fermentation and failed to reduce CH4 emissions in lactating primiparous cows fed high-starch or high-fiber diets.
基金The authors acknowledge funding support from Ministry of Alberta Agriculture Results Driven Agriculture Research(2018F097R and 2021F124R)NSERC Discovery Grant.
文摘Direct-fed microbials(DFMs)are feed additives containing live naturally existing microbes that can benefit animals’health and production performance.Due to the banned or strictly limited prophylactic and growth promoting usage of antibiotics,DFMs have been considered as one of antimicrobial alternatives in livestock industry.Microorganisms used as DFMs for ruminants usually consist of bacteria including lactic acid producing bacteria,lactic acid utilizing bacteria and other bacterial groups,and fungi containing Saccharomyces and Aspergillus.To date,the available DFMs for ruminants have been largely based on their effects on improving the feed efficiency and ruminant productivity through enhancing the rumen function such as stabilizing ruminal pH,promoting ruminal fermentation and feed digestion.Recent research has shown emerging evidence that the DFMs may improve performance and health in young ruminants,however,these positive outcomes were not consistent among studies and the modes of action have not been clearly defined.This review summarizes the DFM studies conducted in ruminants in the last decade,aiming to provide the new knowledge on DFM supplementation strategies for various ruminant production stages,and to identify what are the potential barriers and challenges for current ruminant industry to adopt the DFMs.Overall literature research indicates that DFMs have the potential to mitigate ruminal acidosis,improve immune response and gut health,increase productivity(growth and milk production),and reduce methane emissions or fecal shedding of pathogens.More research is needed to explore the mode of action of specific DFMs in the gut of ruminants,and the optimal supplementation strategies to promote the development and efficiency of DFM products for ruminants.
基金a part of a PhD project of Sanjay Kumar that was supported by NDRI (ICAR) fellowshipNational Initiative on Climate Resilient Agriculture, India (NICRA) for providing partial support
文摘Direct-fed microbials（DFM）, generally regarded as safe status, are successfully used in improving rumen ecology, gastro-intestinal health, feed efficiency, milk production and growth rate in ruminants. On the other hand, methanogenesis in rumen, which accounts for a significant loss of ruminant energy and increased greenhouse gas in environment, is of great concern, therefore, use of DFM for improving productivity without compromising the animal health and ecological sustainability is encouraged. The present study was conducted to investigate the methane reducing potential of bacteriocinogenic strain Pediococcus pentosaceus-34. Since, the culture showed no hemolysis on blood agar and DNase activity, hence, it was considered to be avirulent in nature, a prerequisite for any DFM. The culture also showed tolerance to pH 5.0 for 24 h with 0.5% organic acid mixture, whereas when given a shock for 2 h at different p H and organic acids concentrations, it showed growth at pH 3.0 and 4.0 with 0.1 and 1.0% organic acids, respectively, as having good animal probiotics attributes. The total gas production was significantly（P〈0.05） higher in live pedicoccal culture（LPC） and dead pedicoccal culture（DPC） both with wheat straw, when compared to the control. In sugarcane bagasse, gas production was significantly lower（P〈0.05） with LPC compared to the control and DPC both. Methane was reduced by the inclusion of LPC in sugarcane bagasse（0.07 mL CH4 mg–1 dry matter digestibility） with no effect on other rumen fermentation parameters. However, with wheat straw and LPC total gas, in vitro dry matter digestibility, total volatile fatty acids increased significantly but no reduction in methane production was observed in comparison to the control. Therefore, further research is warranted in this direction, if the bacteriocinogenic strains can be used as DFM for ruminants to improve the ruminant productivity.
基金Supported by the Autogenous Vaccine Research Project of the Poultry Health Laboratory,Poultry Science Department,University of Arkansas
文摘Objective: To evaluate the ability of Bacillus spp. as direct-fed microbials(DFM) to biodegrade al atoxin B1(AFB1) by using an in vitro digestive model simulating in vivo conditions.Methods: Sixty-nine Bacillus isolates were obtained from intestines, and soil samples were screened by using a selective media method against 0.25 and 1.00 μg/m L of AFB1 in modii ed Czapek-Dox medium. Plates were incubated at 37 °C and observed every two days for two weeks. Physiological properties of the three Bacillus spp. candidates were characterized biochemically and by 16 S r RNA sequence analyzes for identii cation. Tolerance to acidic p H, osmotic concentrations of Na Cl, bile salts were tested, and antimicrobial sensitivity proi les were also determined. Bacillus candidates were individually sporulated by using a solid fermentation method and combined. Spores were incorporated into 1 of 3 experimental feed groups: 1) Negative control group, with unmedicated starter broiler feed without AFB1; 2) Positive control group, with negative control feed contaminated with 0.01% AFB1; 3) DFM treated group, with positive control feed supplemented with 109 spores/g. After digestion time(3:15 h), supernatants and digesta were collected for high-performance liquid chromatography l uorescence detection analysis by triplicate.Results: Three out of those sixty-nine DFM candidates showed ability to biodegrade AFB1 in vitro based on growth as well as reduction of l uorescence and area of clearance around each colony in modii ed Czapek-Dox medium which was clearly visible under day light after 48 h of evaluation. Analysis of 16S-DNA identii ed the strains as Bacillus amyloliquefaciens, Bacillus megaterium and Bacillus subtilis. The three Bacillus strains were tolerant to acidic conditions(p H 2.0), tolerant to a high osmotic pressure(Na Cl at 6.5%), and were able to tolerate 0.037% bile salts after 24 h of incubation. No signii cant dif erences(P > 0.05) were observed in the concentrations of AFB1 in neither the supernatants nor digesta samples evaluated by highperformance liquid chromatography with l uorescence detection between positive control or DFM treated groups. Conclusions: In vitro digestion time was not enough to confirm biodegradation of AFB1. Further studies to evaluate the possible biodegradation ef ects of the BacillusDFM when continuously administered in experimentally contaminated feed with AFB1, are in progress.
文摘Three experiments were conducted to evaluate direct-fed microbial (<strong>DFM</strong>) supplementation on live performance, carcass characteristics, and fecal shedding of <em>E. coli</em> in feedlot steers. In Exp. 1, 400 steers (BW = 348 kg) were assigned to treatments: <strong>CON</strong> = lactose carrier only, <strong>BOV</strong> =<em> P. freudenreichii </em>(NP24) +<em> L. acidophilus</em> (NP51), <strong>BOVD</strong> = <em>P. freudenreichii</em> (NP24) +<em> L. acidophilus</em> (NP51), and <strong>COMB</strong> = BOV fed for the first 101 d on feed, followed by BOVD for the final 28 d prior to harvest. In Exp. 2 (n = 1800;BW = 354 kg) and Exp. 3 (n = 112;BW = 397 kg), steers were utilized in a randomized complete block design and assigned to DFM treatments using low dose and high dose, respectively. Fecal samples were collected prior to harvest and analyzed for <em>E. coli</em> serogroups. In Exp. 1, DFM reduced (P < 0.01) the concentration of<em> E. coli</em> O157. Prevalence of O157 was reduced by BOVD supplementation in Exp. 2 and 3 (P < 0.01 and P = 0.08, respectively), and concentration of <em>E. coli</em> O157 in positive samples was reduced in both experiments where enumeration was performed (P ≤ 0.02). Weighted mean differences across the three experiments were equal to a 33% reduction in the prevalence of E. coli O157:H7 in BOVD treated cattle. A significant reduction in prevalence of O26, O45, O103, and O121 was observed in Exp. 2 (P ≤ 0.03). These results indicate that high levels of <em>L. acidophilus</em> (NP51) may represent an effective pre-harvest food safety intervention to reduce fecal shedding of several <em>E. coli</em> serogroups.
文摘Manipulating the gastrointestinal microbial ecosystem to enhance animal performance and reproductive responses has been one of the main goals of animal science researchers and veterinarians.Recent restrictions to the use of antimicrobials as growth promoters led researchers to seek alternative practices that can show promise both from the standpoint of efficacy as well as from the practical and economic aspects.One of the alternatives that surfaced as very promising in the last few decades is the use of direct-fed microbials （DFM） as a means to modulate the effects of the gastrointestinal microbiome on the host immune status, health and productivity.
基金the Copperbelt University Africa Centre of Excellence for Sustainable Mining(CBUACESM)at Copperbelt University in Kitwe,Zambia for funding this work。
文摘The Earth's environment is undergoing significant transformation due to mining,pollution,and climate change.Although mining is essential for economic development,it contributes significantly to the release of potentially harmful elements(PHEs)that threaten human health and destabilize microbial communities.Anthropogenic climate change,driven by greenhouse gas emissions,alters water availability and soil composition,further affecting ecosystem balance and microbial diversity.This review aggregates findings from studies covering the last two decades to assess how mining pollution and climate change impact microbial diversity,their adaptation mechanisms,and the associated health risks.It reveals that environmental stressors favour resistant microbial taxa while eliminating sensitive species,thereby reshaping microbial ecosystems.Microorganisms demonstrate genetic,biochemical,and physiological adaptations that enable them to survive in polluted or changing environments,often resulting in a higher prevalence of pathogenic and antibiotic-resistant strains.These variations in microbial dynamics contribute to health challenges such as respiratory infections,foodborne illnesses,and increased exposure in children and immune-compromised individuals.The review highlights the linkages between environmental degradation,microbial ecology,and human health,underscoring the need for integrative policies and interventions to mitigate long-term risks,support microbial ecosystem stability,promote sustainable health and agricultural outcomes.
基金supported by the European Union-Next Generation EU,Mission 4 Component 1,Project Title:“Gut and Neuro Muscular system:investigating the impact of microbiota on nerve regeneration and muscle reinnervation after peripheral nerve injury”,CUP D53D23007770006,MUR:20227YB93W,to GR。
文摘The gut microbiota:The human body is colonized by a diverse and complex microbial community–including bacteria,viruses,archaea,and unicellular eukaryotes–that plays a central role in human wellbeing.Indeed,microbiota is crucial for several functions,including host metabolism,physiology,maintenance of the intestinal epithelial integrity,nutrition,and immune function,earning it the designation of a“vital organ”(Guinane and Cotter,2013).
基金supported by China Hunan Provincial Science&Technology Department(No.2023NK2031)the Natural Science Foundation of Hunan Province(No.2023JJ40031)the Ministry of Human Resources and Social Security(No.H20240365).
文摘To explore the adaptive mechanisms of the partial nitritation-anammox(PNA)process under high salinity stress during kitchen wastewater treatment,focusing on their physiological and molecular responses through metagenomic analysis.An airlift inner-circulation partition bioreactor(AIPBR)was developed,featuring an inner cylinder and a flow guide tube to create distinct oxygen gradients,facilitating the study of microbial adaptation under varying salt conditions.The AIPBR was operated with synthetic wastewater containing ammonium concentrations of 1800±100 mg/L and salinity gradients ranging from 1 to 10 g/L,followed by a fixed salinity period at 6 g/L,with ammonium concentrations approximately 850 mg/L.High-throughput metagenomic analysis revealed shifts in functional genes and metabolic pathways in response to salinity stress.Anammox bacteria adapted by enriching genes involved in the synthesis of osmoprotective compounds and activating energy-producing pathways like the tricarboxylic acid cycle(TCA).These adaptations,along with modifications in membrane composition,were essential for sustaining system stability under elevated salinity.Under prolonged high salinity stress,anaerobic ammonium oxidizing(AnAOB)exhibited improved salt tolerance,maintaining a total nitrogen removal efficiency above 85%and stabilizing after an adaptation phase.The metagenomic data revealed a marked enrichment of genes associated with ion transport,stress response mechanisms,and DNA repair pathways.Changes in microbial community composition favored salt-tolerant species,supporting system stability.These findings highlight the applicability of the developed bioreactor for scaling up the PNA process to handle high-salinity wastewater,providing a promising avenue for sustainable nitrogen removal in challenging environments.
基金supported by the China Central Government-Guided Local Science and Technology Development Project(23ZYQA291)the Innovation Star Project for Excellent Postgraduates in Gansu Province(2025CXZX-169)the Key Science&Technology Project of Gansu Province,China(22ZD6NA007)。
文摘Soil water content and salinity critically regulate soil microbial composition,plant community structure,and ecosystem multifunctionality(EMF)in semi-arid grasslands.However,the mechanisms through which drought(D),saline-alkaline(SA),and their combined(DSA)stress influence these ecological components remain poorly understood.This study investigated these mechanisms along natural gradients in a semi-arid grassland of China by analyzing soil physical-chemical properties,microbial communities,and vegetation characteristics.The results showed that as the environmental stress shifted from the D group to the DSA group and then to the SA group,soil electrical conductivity significantly increased,while urease and phosphatase activities significantly decreased.Soil organic carbon,total nitrogen,total phosphorus,and microbial biomass carbon and nitrogen were lower in the D and SA groups than in the DSA group.Meanwhile,plant biomass showed an increasing trend along the treatment gradient,primarily driven by dominant species,while plant diversity did not exhibit significant differences.Further analysis identified the soil water content and salinity as the key determinants of soil microbial diversity and community complexity.Soil enzyme activities exhibited contrasting relationships with microbial composition,correlating positively with the richness of bacterial amplicon sequence variants(ASVs)but negatively with the richness of fungal ASVs.Notably,microbial biomass,which varied significantly across different groups,emerged as a key predictor of changes in EMF,with its critical role confirmed through structural equation modeling.These findings collectively elucidate the responses of ecological communities to synergistic soil hydro-saline stress in semi-arid ecosystems,while highlighting the critical role of microbial biomass in maintaining EMF.
基金funded by the Beef Cattle Research Council Cluster(FDE.18.21C)Natural Sciences and Engineering Research Council of Canada(NSERC)Discovery,NSERC Canadian Research Chair(Tier 1)program+2 种基金NSERC Alliance program(ALLRP 588541‐23)Foundation for Food&Agriculture Research Greener Cattle Initiative(Award ID 22‐000373)DSM Nutritional Products,Kaiseraugst,Switzerland。
文摘Background The enteric methane inhibitor 3-nitrooxypropanol(3-NOP)inhibits the key enzyme in ruminal methanogenesis,but whether short-term(ST)and long-term(LT)dietary supplementation has similar effects on rumen microbiota in beef cattle and how microbes change after 3-NOP withdrawal have not been studied.This study investigated changes in rumen bacteria,archaea,and protozoa after ST and LT dietary supplementation and removal of 3-NOP using metataxonomic analysis.Results A total of 143 rumen samples were collected from two beef cattle studies with 3-NOP supplementation.The ST study(95 samples)used eight ruminally cannulated beef cattle in a 4×4 Latin square design with four 28-d of 3-NOP treatments[mg/kg of dry matter(DM)]:control:0,low:53,med:161,and high:345.The LT study(48 samples)was a completely randomized design with two 3-NOP treatments[control:0,and high:280 mg/kg of DM)fed for 112-d followed by a 16-d withdrawal(without 3-NOP).Bacterial and archaeal communities were significantly affected by 3-NOP supplementation but limited effects on protozoal communities were observed.Under ST supplementation,the relative abundances of Prevotella,Methanobrevibacter(Mbb.)ruminantium,Methanosphaera sp.ISO3-F5,and Entodinium were increased(Q<0.05),whereas those of Mbb.gottschalkii and Epidinium were decreased(Q<0.05)with 3-NOP supplementation.In LT study,relative abundances of Mbb.ruminantium,and Methanosphaera sp.Group5 were increased(Q<0.05),while those of Saccharofermentans and Mbb.gottschalkii were decreased(Q<0.05)with 3-NOP supplementation.Comparison between 3-NOP supplementation and the withdrawal revealed increased relative abundances of Clostridia UCG-014 and Oscillospiraceae NK4A214 group and decreased those of Eubacterium nodatum group and Methanosphaera sp.Group5(P<0.05)after 3-NOP withdrawal.Further comparison of rumen microbiota between control and 3-NOP withdrawal showed significantly higher(P=0.029)relative abundances of Eggerthellaceae DNF00809,p-1088-a5 gut group,and Family XII UCG-001 in control group while no significant differences were detected for archaea and protozoa.Microbial network analysis revealed that microbial interactions differed by both 3-NOP dose and durations.Conclusions Both ST and LT supplementation affected overall rumen microbial profile,with individual microbial groups responded to 3-NOP supplementation differently.After 3-NOP withdrawal,not all microbes showed recovery,indicating that the 3-NOP driven shifts were only partially reversible.These findings provide an understanding of the effects of 3-NOP on rumen microbial communities and their adaptability to methane mitigation strategies.
基金supported by National Natural Science Foundation of China(31730091,32372900,32072743)Natural Science Foundation of Sichuan Province(2023NSFSC0237)Major Science and Technology Projects in Sichuan Province(2021ZDZX0009)。
文摘Background Diarrhea remains a major health concern in both young animals and humans.Prevotella spp.,a dominant commensal genus in the healthy porcine gut,becomes increasingly abundant following weaning,suggesting a potential role during this critical transitional period.However,its involvement in post-weaning diarrhea remains poorly understood.Here,we aim to elucidate the role and underlying mechanisms of Prevotella in alleviating diarrhea in weaned piglets.Results To model unsanitary housing conditions,piglets were housed in uncleaned pens containing residual fecal matter from previous occupants and exposed to cold stress by maintaining the ambient temperature at 19℃,below the optimal 28℃.Under these conditions,piglets were orally administered either a blank medium(CON,n=10×2)or Prevotella copri at 1×10^(8)CFU(Pc,n=10×2)on d 1,3,and 5.After 28 d,cold stress induced a diarrhea incidence of 33.45%in the CON group,while P.copri supplementation significantly reduced the diarrhea rate to 19.73%.Treatment with P.copri markedly improved intestinal morphology in the small intestine,decreased serum levels of lipopolysaccharide(LPS)and intestinal fatty acid-binding protein(i-FABP),and enhanced total antioxidant capacity(T-AOC)and catalase(CAT)activity.Quantitative PCR and 16S rRNA gene sequencing revealed that P.copri significantly increased the colonic abundance of Prevotella,reshaping both the composition and functional profile of the gut microbiota.Moreover,P.copri enhanced the modularity and robustness of microbial ecological networks.Untargeted metabolomic profiling of colonic contents revealed a significant enrichment of metabolites involved in the arachidonic acid pathway following P.copri supplementation.In parallel,untargeted metabolomics of P.copri culture supernatants identified differential metabolic pathways including metabolic pathways,biosynthesis of secondary metabolites,and biosynthesis of antibiotics.In vitro assays demonstrated that P.copri-derived metabolites inhibited the growth of three common porcine intestinal pathogens.Furthermore,both P.copri metabolites and arachidonic acid enhanced intestinal barrier integrity and suppressed TNF-α-induced inflammation and apoptosis in Caco-2 cells through activation of the AHR–Nrf2 signaling pathway.Conclusions These findings highlight the role of P.copri in maintaining gut homeostasis and provide new insights into microbiota-based interventions for early-life intestinal disorders.
基金supported by the National Natural Science Foundation of China(grant no.U23A2016 and 42101094).
文摘Land-use change and associated landscape pattern modifications are key drivers of biodiversity dynamics.However,the influence of landscape heterogeneity on soil microbial diversity remains poorly understood.This study analyzed soil microbial communities(bacteria and fungi)and soil properties(organic carbon,pH,available potassium,nitrogen,and phosphorus)across 74 sites in Hainan,China,covering six land-use types(rubber,areca,banana,farmland,longan,and mango).We evaluated the effects of both landscape composition(habitat coverage and patch richness)and configuration heterogeneity(patch density and largest patch index)on soil microbial community structure and diversity.Results show that land-use types and landscape patterns weakly affect microbial composition but strongly shape diversity in a taxon-specific way.Bacterial Chao1 richness and fungal Shannon diversity varied significantly among land-use types,mainly due to soil available phosphorus.Rubber coverage positively correlated with bacterial and fungal diversity,while the largest patch index negatively affected only fungal diversity.Available phosphorus reduced this negative effect.This study demonstrates that land-use change and landscape heterogeneity differentially influence soil microbial composition and diversity,with available phosphorus emerging as a key determinant.Our findings highlight the need for careful landscape planning and soil nutrient management to preserve soil microbial diversity.
基金supported by the National Research Foundation of Korea(2020R1F1A1074155).
文摘Recently,Prevotella spp.,a major genus of gram-negative commensal bacteria in humans,have emerged as a key microbial contributor to host metabolism due to its ability to ferment dietary fibers,produce beneficial short-chain fatty acids,and influence immune responses.However,their diversity and functional differences have created challenges for their development and therapeutic use.Recent studies have shown that specific Prevotella species,such as P.copri,P.intestinalis,and P.histicola,can strengthen gut barrier integrity and reduce metabolic imbalances.Notably,Prevotella populations can be increased through high-fiber or herbal-based treatments.Traditional herbal medicines,including fiber-rich decoctions,also demonstrate the potential to boost endogenous Prevotella communities,enhance microbial fermentation,and improve glucose and lipid balance.This perspective examines the context-dependent roles of Prevotella spp.,with emphasis on the functional heterogeneity of key species such as P.copri,suggests a framework for combining herbal modulation with species-level microbiota profiling,and outlines a research plan to explore microbe-herb synergy in treating obesity,type 2 diabetes,and related metabolic disorders.This strategy offers a new,ecology-based approach to complement standard metabolic interventions.
基金supported by FCT/MCTES UIDP/05608/2020(https://doi.org/10.54499/UIDP/05608/2020)UIDB/05608/2020(https://doi.org/10.54499/UIDB/05608/2020).
文摘Background:The Colorectal Cancer(CRC)pathogenesis and therapeutic efficacy are influenced by the gut microbiome,making it a promising biomarker for predicting treatment responses and adverse effects.This systematic review aims to outline the gut microbiome composition in individuals with CRC undergoing the same therapeutic regimen and evaluate interindividual microbiome profile variations to better understand how these differences may influence therapeutic outcomes.Methods:Key studies investigating the microbiome’s role in therapeutic approaches for CRC were searched in both PubMed and Cochrane databases on 12 and 22 March 2025,respectively.Eligible studies included free full-text English-language randomized clinical trials and human observational studies reporting on gut microbiome composition and treatment outcomes.RoB 2 and ROBINS-I were employed in the evaluation of bias for randomized trials and observational studies,respectively.Data extracted was narratively analyzed.Results:Six studies involving a total of 361 individuals were included.Therapeutic interventions,either standard treatments and/or those targeting the gut microbiome,generally increased probiotic taxa and reduced pro-carcinogenic bacteria.However,no consistent pattern of improved clinical outcomes was observed,suggesting that treatment mechanisms,the tumor’s nature,and individual characteristics play critical roles in microbiome modulation.Conclusion:The gut microbiome holds significant potential in clinical settings.Nonetheless,further research is needed to better understand its functional aspects and to consider the influence of treatment mechanisms,the tumor’s nature,and individual characteristics as modulators,in order to optimize clinical outcomes.
基金financially supported by the National Natural Science Foundation of China (No. 52371056)the Liaoning Provincial Youth Science Fund Project, China (Category B, No. 2025JH6/101000010)+1 种基金the Guangdong Basic and Applied Basic Research Foundation, China (No. 2024A1515240055)funding from the China Scholarship Council
文摘Microbial contamination and the resulting corrosion in aircraft fuel system pose a serious threat to flight safety.Revealing the corrosion behavior and mechanism of fuel-degrading microorganisms on tank materials is crucial for developing effective mitigation strategies.In this study,the corrosion mechanisms of two representative hydrocarbon-degrading bacteria,Alcanivorax dieselolei and Microbacterium oxydans,toward AA7075 aluminum alloy,were systematically investigated.A combination of biofilm characterization,electrochemical testing,and surface/corrosion product characterization was employed.Both strains markedly accelerated the corrosion of AA7075,as evidence by the progressive decrease in polarization resistance and the pronounced rightward shift of the potentiodynamic polarization curves.Moreover,the difference between the pitting potential(E_(pit))and the corrosion potential(E_(corr))(ΔE=E_(pit)‒E_(corr))decreased due to microbial activities,indicating a pronounced tendency toward accelerated pitting corrosion.Corrosion morphology analysis revealed that both microbes promoted localized pitting corrosion.Furthermore,analysis of aviation kerosene composition indicated that both bacteria accelerated the degradation of C8 and C9 alkanes.These findings highlight the multiple threats of microbial contamination,material degradation,and fuel quality deterioration in fuel systems and underscore the need for targeted protection strategies for marine aviation operations.
基金supported by the National Natural Science Foundation of China(Grant No.32160172)the Key Science-Technology Project of Inner Mongolia(2023KYPT0010)+1 种基金the Natural Science Foundation of Inner Mongolia Autonomous Region of China(Grant No.2025QN03006)the 2023 Inner Mongolia Public Institution High-level Talent Introduction Scientific Research Support Project.
文摘This study establishes and validates a method for the precise quantification of aquatic microbial loads using microbial diversity absolute quantitative sequencing.By adding synthetic spike-in DNA to water samples from the Dahei River prior to DNA extraction and 16S rRNA gene sequencing,it generates standard curves to convert sequencing data into absolute microbial copy numbers.The method,which is proved highly accurate(R^(2)>0.99),reveals a clear contrast between the river sites:the upstream community has not only a significantly higher total microbial load but also a completely different makeup of species compared to the downstream site.This approach effectively overcomes the limitations of relative abundance analysis,providing a powerful tool for environmental monitoring,and proposes key steps for future standardization to ensure data comparability and integration.
基金supported by the National Science and Technology Major Program for Noncommunicable Chronic Diseases(2023ZD0503500)the National Natural Science Foundation of China(82030102,12126602,91857118)+1 种基金the Chinese Academy of Medical Sciences Innovation Fund for Medical Sciences(2021-I2M-1-010,2019-I2M-2-003)the National High Level Hospital Clinical Research Funding(2022-GSP-GG-1,2022-GSP-GG-2)。
文摘Objective Evidence suggests that depleted gut microbialα-diversity is associated with hypertension;however,whether metabolic markers affect this relationship remains unknown.We aimed to determine the potential metabolites mediating the associations ofα-diversity with blood pressure(BP)and BP variability(BPV).Methods Metagenomics and plasma targeted metabolomics were conducted on 523 Chinese participants from the MetaSalt study.The 24-hour,daytime,and nighttime BP and BPV were calculated based on ambulatory BP measurements.Linear mixed models were used to characterize the relationships betweenα-diversity(Shannon and Chao1 index)and BP indices.Mediation analyses were performed to assess the contribution of metabolites to the observed associations.The influence of key metabolites on hypertension was further evaluated in a prospective cohort of 2,169 participants.Results Gut microbial richness(Chao1)was negatively associated with 24-hour systolic BP,daytime systolic BP,daytime diastolic BP,24-hour systolic BPV,and nighttime systolic BPV(P<0.05).Moreover,26 metabolites were strongly associated with richness(Bonferroni P<0.05).Among them,four key metabolites(imidazole propionate,2-hydroxy-3-methylbutyric acid,homovanillic acid,and hydrocinnamic acid)mediated the associations between richness and BP indices(proportions of mediating effects:14.1%–67.4%).These key metabolites were also associated with hypertension in the prospective cohort.For example,each 1-standard deviation unit increase in hydrocinnamic acid significantly reduced the risk of prevalent(OR[95%CI]=0.90[0.82,0.99];P=0.03)and incident hypertension(HR[95%CI]=0.83[0.71,0.96];P=0.01).Conclusion Our results suggest that gut microbial richness correlates with lower BP and BPV,and that certain metabolites mediate these associations.These findings provide novel insights into the pathogenesis and prevention of hypertension.
基金supported by the Key Research and Development Program of Ningxia Hui Autonomous Region,China(2023BCF01029)the Shaanxi Provincial Science and Technology Project for Innovation Team,China(2023-CXTD-59)the Innovative Team Special Project of Northwest A&F University,China(XYTD2023-12)。
文摘Organic management practices and spontaneous fermentations have become focal points in wine research due to increasing consumer interest in healthy foods and sustainable agriculture.In this study,‘Cabernet Sauvignon'grapes sourced from organic and conventional management vineyard(OMV/CMV)in the Ningxia region were subjected to spontaneous fermentation.The microbial,oenological,and aroma profiles of grape must and resulting wines were assessed using high-throughput sequencing(HTS),high-performance liquid chromatography(HPLC),gas chromatography with mass spectrometry(GC-MS),and sensory evaluations.Network analysis was applied to explore relationships among microorganisms,volatile compounds,and aroma attributes.Results showed that organic management significantly increased microbial species richness,α-diversity,and the variety and concentration of aroma compounds,favoring the production of natural wines with complex aroma profiles.Relative abundance of Saccharomyces in OMV reduced,promoting the prevalence of other yeast species during fermentation.Bacterial succession in wines from OMV remained stable,with Pantoea as the dominant genus.Among oenological parameters,OMV wines significantly induced glycerol content,while reduced total acidity,tartaric acid,and citric acid content.These wines exhibited significantly higher levels of fermentative(+16%)and varietal(+72%)volatiles,as well as enhanced floral and sweet fruity aromas,along with distinct nail polish and vegetal notes.Additionally,Saccharomyces,Hanseniaspora,Metschnikowia,and Pantoea were strongly correlated with specific volatile compounds and aroma characteristics.This study provides valuable data that can inform spontaneous fermentation practices and guide vineyard management for natural wine production.
基金funded by the National Natural Science Foundation of China(No.42402310)the Natural Science Foundation of Henan Province(No.242300421657)+1 种基金the National Key Research and Development Program(No.2024YFD2402005)the China Agriculture Research System(No.CARS-50)。
文摘Sedimentary microbial communities play an important role in driving biogeochemical cycles in river ecosystems.The Yellow River is one of the rivers with the highest turbidity over the world.However,limited is known about the microbial variation and its influencing factors in the Yellow River.In this study,we examined the microbial communities and their influencing factors in the sediment of Upper and Mid–Lower reaches of the Yellow River.The results showed that Gammaproteobacteria were most dominant(with Hydrogenophilaceae being the predominant family)in the studied Yellow River sediments.Phyla of Deltaproteobacteria,Nitrospirae and family of Bacillaceae,Geobaceraceae were more abundant in the Mid–Lower reaches than in the Upper reaches,while phyla of Gammaproteobacteria,Verrucomicrobia and family of Caldilineaceae,Llumatobacteraceae were more abundant in the Upper reaches than in the Mid–Lower reaches.The microbial communities were predominantly affected by nutrient factors(such as NH_(4)^(+),TN and TP),followed by the spatial and the content of Chla in the Mid–Lower reaches,while they were by predominantly affected by spatial factors,followed by the nutrient factors and the content of Chla in the Upper reaches.The dominant microbial taxa were mostly correlated with COD,NH_(4)^(+),TP and temperature,but they responded differently to these physiochemical factors between the Upper and Mid–Lower reaches.In summary,the sedimentary microbial communities differ between the Upper and Mid–Lower reaches and respond differently to the environmental and spatial factors in the sediment of the Yellow River.
