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基于线粒体DNA Cyt b、12S rRNA和D-loop序列的铜鱼养殖群体遗传多样性分析
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作者 吴斌 贺刚 +3 位作者 陶志英 邓勇辉 郭怿宁 袁嘉欣 《渔业研究》 2026年第2期181-189,共9页
【目的】本研究分别利用线粒体DNA Cyt b、12S rRNA和D-loop序列对铜鱼(Coreius heterodon)养殖群体进行遗传多样性分析,初步了解其遗传多样性。【方法】采用已报道的特异性引物对线粒体DNA Cyt b、12S rRNA和D-loop序列进行聚合酶链式... 【目的】本研究分别利用线粒体DNA Cyt b、12S rRNA和D-loop序列对铜鱼(Coreius heterodon)养殖群体进行遗传多样性分析,初步了解其遗传多样性。【方法】采用已报道的特异性引物对线粒体DNA Cyt b、12S rRNA和D-loop序列进行聚合酶链式反应(PCR)扩增,并采用双脱氧测序法(Sanger)对扩增产物进行测序。遗传多样性参数由DNASP 6.12软件计算;采用MEGA 11.0软件分析DNA序列的碱基组成和变异位点;利用Kimura双参数模型计算单倍型间的遗传距离,采用邻接法(NJ)和最大似然法(ML)构建D-loop全序列单倍型系统进化树。【结果】用于分析的线粒体DNA Cyt b、12S rRNA和D-loop序列长度分别为1110~1147、425~445和972~1023 bp,平均长度分别为1122.77、430.00和1000.47 bp,中位数长度分别为1122、429和1001 bp。在线粒体DNA Cyt b、12S rRNA和D-loop序列中,分别检测出8、1和14个变异位点,以及22、19和30种单倍型,单倍型间遗传距离分别为0~0.004、0~0.005和0~0.007。基于线粒体DNA Cyt b、12S rRNA和D-loop序列的平均单倍型多样性(Hd)分别为0.547±0.0105、0.186±0.0078和0.885±0.0013;平均核苷酸多样性(Pi)分别为0.00076、0.00044和0.00258;平均核苷酸差异数(k)为0.830、0.186和2.432。同时,歧点分布分析图谱呈现单峰型,在中性检验中Tajima’s D(D=-1.040,P>0.01)为负值,但统计结果为不显著(P>0.01)。【结论】铜鱼养殖群体遗传多样性相对较低,且单倍型间存在广泛的基因交流,但铜鱼养殖群体的种群数量下降。因此,建立起遗传多样性丰富的铜鱼人工繁殖的基础亲鱼群体,解决铜鱼亲本培育问题,持续壮大铜鱼养殖群体规模是首要任务。 展开更多
关键词 铜鱼 Cyt b 12S rRNA d-loop序列 遗传多样性
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Schizophrenia:Genetics,neurological mechanisms,and therapeutic approaches 被引量:1
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作者 Debbie Xiu En Lim Shi Yun Yeo +3 位作者 Zhen You Ashley Chia Aaron Zefrin Fernandis Jimmy Lee John Jia En Chua 《Neural Regeneration Research》 2026年第3期1089-1103,共15页
Schizophrenia is a complex psychiatric disorder marked by positive and negative symptoms,leading to mood disturbances,cognitive impairments,and social withdrawal.While anti-psychotic medications remain the cornerstone... Schizophrenia is a complex psychiatric disorder marked by positive and negative symptoms,leading to mood disturbances,cognitive impairments,and social withdrawal.While anti-psychotic medications remain the cornerstone of treatment,they often fail to fully address certain symptoms.Additionally,treatment-resistant schizophrenia,affecting 30%-40%of patients,remains a substantial clinical challenge.Positive,negative symptoms and cognitive impairments have been linked to disruptions in the glutamatergic,serotonin,GABAergic,and muscarinic pathways in the brain.Recent advances using genome-wide association study and other approaches have uncovered a significant number of new schizophrenia risk genes that uncovered new,and reinforced prior,concepts on the genetic and neurological underpinnings of schizophrenia,including abnormalities in synaptic function,immune processes,and lipid metabolism.Concurrently,new therapeutics targeting different modalities,which are expected to address some of the limitations of anti-psychotic drugs currently being offered to patients,are currently being evaluated.Collectively,these efforts provide new momentum for the next phase of schizophrenia research and treatment. 展开更多
关键词 NEUROINFLAMMATION neuropsychiatric disorders neurotransmitter pathways schizophrenia risk genes treatment resistance
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Systematic evaluation of reference gene stability across tissues and sexes in cuttlefish(Sepiella japonica)
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作者 LI Shuang GU Min +5 位作者 YE Xiaowen YE Bin LIU Siyu YU Jia ZHOU Xu CHI Changfeng 《水产学报》 北大核心 2026年第2期26-49,共24页
Quantitative real-time PCR(qPCR)is widely used for gene expression analysis,but its accuracy critically depends on stable internal reference genes for normalization.In marine invertebrates,especially non-model taxa su... Quantitative real-time PCR(qPCR)is widely used for gene expression analysis,but its accuracy critically depends on stable internal reference genes for normalization.In marine invertebrates,especially non-model taxa such as cephalopods,systematic evaluation of reference genes is limited,leading to potential bias.The cuttlefish Sepiella japonica is ecologically and economically important in China,yet previous molecular studies have often relied on single unvalidated reference genes,which may compromise data reliability.This study aimed to systematically evaluate the stability of five commonly used reference genes(18S,ef-1α,ef-1γ,gapdh,andβ-actin)across multiple tissues and sexes of S.japonica,and to identify the most suitable reference genes and optimal number for qPCR normalization.Fifteen to sixteen tissue types were collected from ten healthy adults(five males and five females).Total RNA was extracted,reverse-transcribed,and analyzed by qPCR.Gene stability was assessed using four algorithms(geNorm,NormFinder,BestKeeper,andΔCt)integrated with RefFinder,and the optimal gene number was determined using geNorm pairwise variation(V_(n/n+1)<0.15).Four transcriptome-derived genes(creld2,cd109,acy1,and miox)were used for validation.The C_(t)values of the five genes ranged from 15.47 to 20.83.β-actin and gapdh showed pronounced variability in expression stability among tissues and sexes,indicating their limited suitability for normalization.18S exhibited the highest expression(mean C_(t):15.47-16.29)and lowest variability but displayed sex-biased expression,whereas ef-1αand ef-1γremained consistently stable across most tissues in both sexes,with ef-1αbeing the most robust and showing no sex-related bias.Although specific rankings varied among tissues and sexes,the comprehensive results indicated that ef-1αand ef-1γpossessed the highest overall stability,followed by 18S,whileβ-actin and gapdh were the least stable.The final comprehensive rankings were ef-1γ>ef-1α>18S>gapdh>β-actin(male)and ef-1α>ef-1γ>18S>gapdh>β-actin(female).geNorm analysis(V2/3<0.15)indicated that two genes,mainly ef-1αand ef-1γ,were generally sufficient for reliable normalization in most tissues.Validation confirmed that normalization using the stable ef-1αand ef-1γaccurately reflected the expression differences among tissues,whereasβ-actin and gapdh can bias or confound statistical analyses.ef-1αand ef-1γare identified as the most reliable reference gene combination for qPCR analysis in S.japonica,while 18S can serve as an auxiliary gene for within-sex comparisons.The use ofβ-actin or gapdh alone is not recommended.This study establishes a systematic framework for selecting reliable reference genes in S.japonica,thereby facilitating robust qPCR normalization and providing a foundation for future gene expression research in S.japonica and other cephalopods. 展开更多
关键词 Sepiella japonica reference genes qPCR expression stability RefFinder
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Breaking Through Oral Gene Delivery Barriers:Peptide Nanocarriers Delivering CAR Genes for Targeted Pancreatic Cancer Therapy
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作者 YIN Ting 《生物化学与生物物理进展》 北大核心 2026年第2期273-274,共2页
A recently published study(Xin et al.,Prog Biochem Biophys,2026,53(2):431-441.DOI:10.3724/j.pibb.2025.0508)addresses the therapeutic challenges of pancreatic ductal adenocarcinoma(PDAC)by innovatively developing an or... A recently published study(Xin et al.,Prog Biochem Biophys,2026,53(2):431-441.DOI:10.3724/j.pibb.2025.0508)addresses the therapeutic challenges of pancreatic ductal adenocarcinoma(PDAC)by innovatively developing an orally administered nanogene delivery system.Designed to achieve in situ,efficient delivery of chimeric antigen receptor(CAR)genes to tumor sites,this approach offers a novel strategy for CAR-macrophage(CAR-M)based immunotherapy.Its key highlights are as follows. 展开更多
关键词 targeted pancreatic cancer therapy situ delivery orally administered nanogene delivery systemdesigned car genes pancreatic ductal adenocarcinoma pdac oral gene delivery chimeric antigen receptor peptide nanocarriers
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Cloning and Bioinformatic Analysis of the fbpA Gene in Vibrio alginolyticus
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作者 Peng ZHOU Jiaxin FAN +4 位作者 Haiyun FENG Yichen DU Weijie ZHANG Na WANG Huanying PANG 《Asian Agricultural Research》 2026年第3期28-33,共6页
[Objectives]To clone the fbpA gene from Vibrio alginolyticus strain HY9901 and perform bioinformatic analyses,aiming to preliminarily elucidate the structure and function of the FbpA protein.[Methods]The fbpA gene was... [Objectives]To clone the fbpA gene from Vibrio alginolyticus strain HY9901 and perform bioinformatic analyses,aiming to preliminarily elucidate the structure and function of the FbpA protein.[Methods]The fbpA gene was amplified using PCR and sequenced.Bioinformatics software was employed to analyze the fbpA gene sequence and the deduced FbpA protein for physicochemical properties,signal peptides,transmembrane structures,functional sites,subcellular localization,homology comparisons,phylogenetic analysis,and structural prediction.[Results]The fbpA gene(1014 bp,encoding 337 amino acids,GenBank accession number PP707017)was successfully cloned.The FbpA protein was identified as a stable hydrophilic protein(molecular weight 37.589 kD,pI 5.97)containing a signal peptide,lacking transmembrane domains,and predicted to be localized extracellularly.It harbors 7 N-myristoylation sites,8 phosphorylation sites,2 N-glycosylation sites,and 7 microbody C-terminal targeting signal sites.The protein is highly conserved within the Vibrio genus,exhibiting 99.41%and 99.40%similarity to the Vibrio diabolicus subgroup and Vibrio antiquarius,respectively,with all three clustering together on the same evolutionary branch.Secondary structure prediction indicated a predominance of alpha-helices(49.85%)and random coils(30.27%).[Conclusions]This study successfully cloned the fbpA gene and characterized the structural features and evolutionary relationships of the FbpA protein,laying a foundation for further investigation into its role in the pathogenesis of V.alginolyticus and the development of vaccines. 展开更多
关键词 Vibrio alginolyticus gene amplification fbpA gene Bioinformatics analysis
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Genetic analysis of Han-Chinese patients with isolated congenital ptosis
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作者 Qian-Ling Zhang La-Mei Yuan +4 位作者 Xin-Yue Deng Wen Zheng Jun-Hui Yi Hong-Bo Xu Hao Deng 《International Journal of Ophthalmology(English edition)》 2026年第1期34-41,共8页
AIM:To conduct a genetic analysis of Han-Chinese patients with isolated congenital ptosis(ICP)and identify the genetic variants related to the condition.METHODS:Sixty-five unrelated patients with ICP were enrolled.Com... AIM:To conduct a genetic analysis of Han-Chinese patients with isolated congenital ptosis(ICP)and identify the genetic variants related to the condition.METHODS:Sixty-five unrelated patients with ICP were enrolled.Comprehensive clinical examinations,whole exome sequencing(WES),and Sanger sequencing were used to reveal the potential genetic causes.Combined with public and in-house control databases,multiple bioinformatics prediction tools,and conservation analysis,the potential variants were further analyzed.AlphaFold 3,an accurate modelling prediction tool,was utilized to generate three-dimensional structural models of both wild-type and mutated proteins.RESULTS:Three novel heterozygous variants in the zinc finger homeobox 4 gene(ZFHX4),c.5145C>A(p.N1715K),c.10382C>T(p.A3461V),and c.10795G>A(p.A3599T),were identified in three patients,respectively.Bioinformatics analyses suggested that these variants are likely to exert deleterious effects,supporting their potential involvement in the pathogenesis of ptosis.CONCLUSION:The novel heterozygous ZFHX4 variants are identified as disease-associated variants in three patients with ptosis,suggesting that ZFHX4 may be a disease-causing gene for autosomal dominant ICP with incomplete penetrance or a susceptibility gene.These findings expand the variant spectrum of ZFHX4,improve understanding of the pathogenesis of ZFHX4-related ptosis,and may contribute to the genetic counseling and disease management,as well as the development of experimental treatments. 展开更多
关键词 PTOSIS ZFHX4 missense variants diseasecausing gene susceptibility gene
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信江流域宽鳍鱲D-loop区遗传多样性研究
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作者 席红波 万周瑞阳 +2 位作者 罗健 吴雅婷 宋雪琳 《江西水产科技》 2026年第1期12-16,共5页
为探究信江流域宽鳍鱲(Zacco aff.acanthogenys)种群的遗传资源现状,本研究以采集自信江上、中、下游河段共115尾宽鳍鱲样本作为研究对象,利用PCR扩增和DNA测序技术获得了长度为879 bp的线粒体DNA控制区(D-loop)序列,并对其进行遗传多... 为探究信江流域宽鳍鱲(Zacco aff.acanthogenys)种群的遗传资源现状,本研究以采集自信江上、中、下游河段共115尾宽鳍鱲样本作为研究对象,利用PCR扩增和DNA测序技术获得了长度为879 bp的线粒体DNA控制区(D-loop)序列,并对其进行遗传多样性分析。分析结果显示:879 bp的D-loop序列中AT碱基含量高于GC碱基含量;共发现24个变异位点,包括15个简约信息位点和9个自裔位点;24个多态位点定义了19个单倍型,单倍型多样性指数(H_(d))为0.772,核苷酸多样性指数(π)为0.00233,平均核苷酸差异数(k)为2.033;不同单倍型之间的遗传距离在0.0011到0.0162之间。高单倍型多样性和低核苷酸多样性揭示信江流域的宽鳍鱲群体可能在经历过瓶颈效应后,发生了迅速的种群扩张。 展开更多
关键词 信江 宽鳍鱲 d-loop 遗传多样性
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Cloning and Bioinformatics Analysis of DsCBL4 Gene from Dianthus spiculifolius Schur
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作者 Di Haoyang Hou Xinyang +4 位作者 Li Yan You Xue Yu Yuxin Wang Jingang Zhang Haizhen 《Journal of Northeast Agricultural University(English Edition)》 2026年第1期22-34,共13页
Dianthus spiculifolius Schur,as an emerging ornamental plant,has extensive applications and economic values.In this study,the DsCBL4 gene was successfully cloned,and its tissue-specific expression,expression patterns ... Dianthus spiculifolius Schur,as an emerging ornamental plant,has extensive applications and economic values.In this study,the DsCBL4 gene was successfully cloned,and its tissue-specific expression,expression patterns under various abiotic stresses,subcellular localization,and bioinformatics analysis of the encoded amino acid sequence were conducted.The results showed that the coding region of the DsCBL4 gene was 675 bp long,encoding 224 amino acids.It had high homology with the amino acids encoded by Amaranthus tricolor,Chenopodium quinoa and Spinacia oleracea.The predicted relative molecular mass of DsCBL4 was 25.61 ku,with an isoelectric point of 4.58,and it had phosphorylation sites,belonging to an unstable hydrophilic protein.Its secondary structure includedα-helices,irregular coils and extended chains.The tertiary structure prediction revealed that DsCBL4 had four EFhand calcium-binding domains necessary for Ca2+binding in plant calmodulin-like proteins and the FPSF motif for calcineurin B-like protein(CBL)-interacting protein kinase(CIPK)activation.The expression level of the DsCBL4 gene showed tissue specificity,with the highest expression in roots.It was induced by drought,low temperature,combined drought and low temperature,salt stress,nitrogen stress,phosphorus stress,calcium ion stress,high temperature stress,and abscisic acid(ABA)stress.Both transient infection in Nicotiana tabacum L.and stable expression in transgenic Arabidopsis thaliana showed that the DsCBL4 protein was localized to the cell membrane.These results suggested that DsCBL4 might be involved in the abiotic stress response of Dianthus spiculifolius through the calcium signaling pathway,providing a theoretical basis for understanding its molecular mechanism.This study provided an important reference for further exploring the role of the DsCBLs gene family in plant stress resistance. 展开更多
关键词 Dianthus spiculifolius Schur CBL4 gene gene cloning expression analysis structural analysis
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How do nanomaterials influence the spread of antibiotic resistance genes in aquatic environments?
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作者 Yun Bai Shengnan Li Shih-Hsin Ho 《Chinese Chemical Letters》 2026年第1期186-197,共12页
Antibiotic resistance genes(ARGs) are recognized as a primary threat to the sustainability of environment and human health in the 21^(st) century.Nanomaterials(NMs) have attracted substantial attention due to their un... Antibiotic resistance genes(ARGs) are recognized as a primary threat to the sustainability of environment and human health in the 21^(st) century.Nanomaterials(NMs) have attracted substantial attention due to their unique dimensions and structures.Unfortunately,emerging evidence suggests that NMs may facilitate the transmission of ARGs.It is crucial to elucidate how NMs affect the evolution and dissemination of ARGs.The current review comprehensively examines the role of NMs in the widespread transmission of ARGs in aquatic environments and the underlying mechanisms involved in the process.It aims to clarify the effects and mechanisms of NMs on the horizontal gene transfer processes that are associated with ARGs,including the enhancement of cell membrane permeability,the formation of nanopores on membranes,promotion of mutagenesis,and the generation of reactive oxygen species(ROSs).Furthermore,the trade-off between the removal of ARGs and horizontal transfer has been elucidated.The review aspires to guide future research directions,advance knowledge on the implications of NMs in the field of ARGs' transmission,and provide a theoretical foundation for the development of safer and more effective applications of NMs. 展开更多
关键词 Antibiotic resistance genes Antibiotic resistance bacteria NANOMATERIALS Horizontal gene transfer Aquatic environments
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Anti-inflammatory mechanisms of Hedysarum polybotrys polysaccharide in endotoxin-induced uveitis:insights into candidate genes and pathways
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作者 Shuo Yu Jin-Yi Yu +3 位作者 Xin-Li Liu Jing Wang Shi-Lan Feng Hong Lu 《International Journal of Ophthalmology(English edition)》 2026年第2期230-238,共9页
AIM:To identify key genes and inflammatory signaling pathways involved in the anti-inflammatory effects of Hedysarum polybotrys polysaccharide(HPS)in a rat model of endotoxin-induced uveitis(EIU).METHODS:EIU was induc... AIM:To identify key genes and inflammatory signaling pathways involved in the anti-inflammatory effects of Hedysarum polybotrys polysaccharide(HPS)in a rat model of endotoxin-induced uveitis(EIU).METHODS:EIU was induced in Wistar rats through subcutaneous injection of lipopolysaccharide(LPS,200μg)and the rats were then randomly assigned to EIU group(n=5)and the HPS intervention group(n=5).HPS(400 mg/kg,intraperitoneally)or its carrier was administered 24h and 1h prior to EIU induction.Eyes were examined and enucleated 24h post-induction,and total RNA was extracted from the iris-ciliary body.Gene expression microarrays were used to identify differentially expressed genes(DEGs),followed by bioinformatics analyses,including gene ontology(GO)and pathway analysis.Key findings were not experimentally validated at the mRNA or protein level.RESULTS:A total of 322 DEGs were identified,comprising 254 mRNA and 68 lncRNA genes.GO analysis revealed significant functional categories,including response to LPS.Pathway analysis identified key signaling pathways involved in uveitis,such as cytokine-cytokine receptor interactions.Notably,16 mRNA and 7 lncRNA DEGs emerged as central nodes in the gene correlation network.CONCLUSION:HPS exerts its anti-inflammatory effects through coordinated signaling pathways,offering insights into potential therapeutic targets for managing uveitis. 展开更多
关键词 differentially expressed genes Hedysarum polybotrys polysaccharide endotoxin-induced uveitis lncRNA gene expression microarray
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Gene traffic mediated by transposable elements shaped the dynamic evolution of ancient sex chromosomes of varanid lizard
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作者 Zexian Zhu Jason Dobry +2 位作者 Erik Wapstra Qi Zhou Tariq Ezaz 《Journal of Genetics and Genomics》 2026年第3期497-509,共13页
Lizards usually exhibit frequent turnovers and a much greater diversity of sex determination mechanisms compared to birds and mammals,with the conserved ZW sex chromosomes of anguimorph lizards originating over 115 mi... Lizards usually exhibit frequent turnovers and a much greater diversity of sex determination mechanisms compared to birds and mammals,with the conserved ZW sex chromosomes of anguimorph lizards originating over 115 million years ago a seeming exception.We previously discovered in an anguimorph lizard Varanus acanthurus(Vac)whose entire chrW,but not chrZ is homologous to part of the chr2 by cytogenetic mapping,suggesting its complex history of sex chromosome evolution yet to be elucidated.To address this,we assemble a chromosome-level genome,and provide evidence that the Vac sex chromosome pair has undergone at least two times of recombination loss,producing a pattern of evolutionary strata like that of birds and mammals.Comparison to other lizard genomes date the stepwise propagation of specific retrotransposon subfamilies enriched near the duplicated gene pairs on the chrW and chr2 to the varanid ancestor.These retrotransposons probably have mediated the recruitment and amplification of autosomal genes on the chrW,including members of a large vomeronasal chemosensory receptor gene family V2R.Our results suggest that the W or Y chromosome as a refugium of repetitive elements,may recurrently recruit short-lived functional genes responsible for sexual dimorphisms during its long-term course of degeneration. 展开更多
关键词 Varanus acanthurus Sex chromosome RETROTRANSPOSON gene traffic V2R gene family
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Regulatory T cells in neurological disorders and tissue regeneration:Mechanisms of action and therapeutic potentials 被引量:1
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作者 Jing Jie Xiaomin Yao +5 位作者 Hui Deng Yuxiang Zhou Xingyu Jiang Xiu Dai Yumin Yang Pengxiang Yang 《Neural Regeneration Research》 2026年第4期1277-1291,共15页
Regulatory T cells,a subset of CD4^(+)T cells,play a critical role in maintaining immune tolerance and tissue homeostasis due to their potent immunosuppressive properties.Recent advances in research have highlighted t... Regulatory T cells,a subset of CD4^(+)T cells,play a critical role in maintaining immune tolerance and tissue homeostasis due to their potent immunosuppressive properties.Recent advances in research have highlighted the important therapeutic potential of Tregs in neurological diseases and tissue repair,emphasizing their multifaceted roles in immune regulation.This review aims to summarize and analyze the mechanisms of action and therapeutic potential of Tregs in relation to neurological diseases and neural regeneration.Beyond their classical immune-regulatory functions,emerging evidence points to non-immune mechanisms of regulatory T cells,particularly their interactions with stem cells and other non-immune cells.These interactions contribute to optimizing the repair microenvironment and promoting tissue repair and nerve regeneration,positioning non-immune pathways as a promising direction for future research.By modulating immune and non-immune cells,including neurons and glia within neural tissues,Tregs have demonstrated remarkable efficacy in enhancing regeneration in the central and peripheral nervous systems.Preclinical studies have revealed that Treg cells interact with neurons,glial cells,and other neural components to mitigate inflammatory damage and support functional recovery.Current mechanistic studies show that Tregs can significantly promote neural repair and functional recovery by regulating inflammatory responses and the local immune microenvironment.However,research on the mechanistic roles of regulatory T cells in other diseases remains limited,highlighting substantial gaps and opportunities for exploration in this field.Laboratory and clinical studies have further advanced the application of regulatory T cells.Technical advances have enabled efficient isolation,ex vivo expansion and functionalization,and adoptive transfer of regulatory T cells,with efficacy validated in animal models.Innovative strategies,including gene editing,cell-free technologies,biomaterial-based recruitment,and in situ delivery have expanded the therapeutic potential of regulatory T cells.Gene editing enables precise functional optimization,while biomaterial and in situ delivery technologies enhance their accumulation and efficacy at target sites.These advancements not only improve the immune-regulatory capacity of regulatory T cells but also significantly enhance their role in tissue repair.By leveraging the pivotal and diverse functions of Tregs in immune modulation and tissue repair,regulatory T cells–based therapies may lead to transformative breakthroughs in the treatment of neurological diseases. 展开更多
关键词 demyelinating diseases gene editing immune regulation immune tolerance neural regeneration neurological diseases non-immune mechanisms regulatory T cells stem cells STROKE tissue homeostasis tissue repair
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Genetic innovations underlying the evolution of root nodule symbiosis in Leguminosae
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作者 Tengfei Liu Hao Lin Zhixi Tian 《Journal of Genetics and Genomics》 2026年第3期381-388,共8页
Root nodule symbiosis(RNS)is a mutualistic association formed between nitrogen-fixing rhizobia or Frankia and host plants limited to four orders within Rosid I―Fabales,Fagales,Cucurbitales,and Rosales―which comprise... Root nodule symbiosis(RNS)is a mutualistic association formed between nitrogen-fixing rhizobia or Frankia and host plants limited to four orders within Rosid I―Fabales,Fagales,Cucurbitales,and Rosales―which comprise the so-called‘Nitrogen Fixing Nodulation Clade’(NFNC).The majority of nodulation studies have focused on Leguminosae,given their agricultural and environmental importance,as well as the widespread occurrence of nodulation among members of this family.Endowing cereal crops with nitrogen fixation,like Leguminosae,presents a strategy to reduce the detrimental effects of synthetic fertilizer overuse.Different hypotheses on the origin of RNS have been proposed;however,key genetic innovations underlying the evolution of RNS,even in Leguminosae,have been rarely reported.In this review,we begin by examining current knowledge of genetic innovations―including gene gain,gene loss,and the acquisition or loss of conserved noncoding sequences(CNS)in preexisting genes.We explore the available evidence supporting these genetic innovations underlying the evolution of RNS in Leguminosae and offer the phylogenomics approach that could be applied to uncover these genetic innovations.Finally,we conclude by proposing a model of genetic innovations underlying the evolution of RNS in Leguminosae and consider the potential implications for the development of nitrogen-fixing crops. 展开更多
关键词 Root nodule symbiosis LEGUMINOSAE genetic innovations gene gain gene loss Conserved noncoding sequences PHYLOGENOMICS
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Genome-wide characterization of B-box gene family in eggplant and functional identification of SmBBX22 in modulating anthocyanin synthesis
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作者 Jianyong Li Shaohang Li +8 位作者 Ziyi Hua Jiangnan Hao Pengqing Wang Mengliang Zhu Jinwei Zhang Sufen Liu Dalu Li Yang Liu Huoying Chen 《Horticultural Plant Journal》 2026年第3期670-689,共20页
The B-box(BBX)gene family plays a vital role in plant growth,development,and stress responses.This study aimed to characterize the SmBBX gene family in eggplant(Solanum melongena L.),addressing the lack of systematic ... The B-box(BBX)gene family plays a vital role in plant growth,development,and stress responses.This study aimed to characterize the SmBBX gene family in eggplant(Solanum melongena L.),addressing the lack of systematic bioinformatics and functional studies in this species.A total of 33 SmBBX genes were identified through genome-wide analysis.These genes were phylogenetically grouped into five major clades,with shared domain structures,motifs,and genomic architectures among clade members.The gene duplication analysis revealed segmental duplication as the primary mechanism underlying the expansion of SmBBX proteins in eggplant.Additionally,expression profiling across diverse tissues and abiotic stress conditions,combined with the construction of protein—protein interaction networks and luciferase complementation assay,provided valuable insights into the functional roles of SmBBX genes.SmBBX21-2 and SmBBX22 were identified as the key regulators of anthocyanin biosynthesis,activating the expression of SmCHS and SmDFR promoters.Functional validation via heterologous and homologous overexpression demonstrated that SmBBX22 promoted anthocyanin accumulation by upregulating the expression of structural genes(SmCHS,SmF3H,SmF3′5′H,SmDFR,and SmANS)and transcription factors(SmTT8 and SmHY5)important for anthocyanin biosynthesis.Furthermore,the integration of DNA affinity purification sequencing and RNA-seq data revealed the direct transcriptional targets of SmBBX22,including genes involved in secondary metabolism,hormone signaling,and developmental regulation.This highlighted the role of SmBBX22 in phenylpropanoid and flavonoid biosynthesis.This study lays the foundation for understanding the functional roles of BBX genes in eggplant and provides new directions for future research in plant metabolism and stress adaptation. 展开更多
关键词 Solanum melongena Anthocyanin biosynthesis B-box gene family Bioinformatics analysis gene expression Transcription factor
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Genetic diversity and population structure of the Fujian oyster Crassostrea angulata revealed by mitochondrial COI gene and nuclear gene ITS2 sequences
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作者 Shiqi YU Ziqiang HAN Huayong QUE 《Journal of Oceanology and Limnology》 2026年第1期419-432,共14页
The Fujian oyster(Crassostrea angulata) is an economically significant shellfish species distributed mainly along the Fujian coast, Southeast China. However, its genetic diversity and structure remain unclear. The mai... The Fujian oyster(Crassostrea angulata) is an economically significant shellfish species distributed mainly along the Fujian coast, Southeast China. However, its genetic diversity and structure remain unclear. The main distribution area of the C. angulata is located in Fujian, South China. In total, 420 C. angulata were collected from 14 natural habitats(populations) along the Fujian coast, and their genetic diversity and structure were analyzed in the mitochondrial COI and nuclear gene ITS2 sequences. Results reveal that all the 14 populations of C. angulata exhibited high levels of genetic diversity, with a total of 57(haplotype diversity: 0.811±0.016) and 124(haplotype diversity: 0.912±0.007) haplotypes revealed by COI and ITS2, respectively. Notably, significant intermediate level of genetic differentiations between the Ningde Zhujiang(ZJ) population(FS T by COI: 0.035–0.142, P<0.05;FS T by ITS2: 0.078–0.123, P<0.05) with other populations were observed for the first time, which is also supported by the results of molecular variance analysis(FC T by COI: 0.105, P<0.05;FC T by ITS2: 0.086, P<0.05) and the clustering of the ZJ population into distinct branches in the interpopulation genetic differentiation tree. Furthermore, the evolutionary tree and haplotype network analyses do not support the formation of a clear geographical genealogical structure among these 14 populations. In addition, the population dynamics analysis suggests that the C. angulata may have undergone expansion during the third ice age of the Pleistocene. These results provide a reference for the preservation and further genetic improvement of C. angulata. 展开更多
关键词 Crassostrea angulata genetic diversity population structure mitochondrial COⅠgene nuclear gene ITS2 sequence
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Functional genes associated with the occurrence of mycotoxins produced by Aspergillus in foods
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作者 Mei Gu Can Liu +4 位作者 Xiaofeng Yue Du Wang Xiaoqian Tang Qi Zhang Peiwu Li 《Journal of Integrative Agriculture》 2026年第2期585-601,共17页
Aspergillus species are ubiquitous fungi that produce mycotoxins(secondary metabolites)known as sterigmatocystin and aflatoxins in many different kinds of foods,which leads to serious contamination in agricultural pro... Aspergillus species are ubiquitous fungi that produce mycotoxins(secondary metabolites)known as sterigmatocystin and aflatoxins in many different kinds of foods,which leads to serious contamination in agricultural products,thereby endangering human health.Extensive studies on Aspergillus fungi have been conducted on growth and development,aflatoxin biosynthesis,and their interactions with environment.Here,we summarized a series of functional genes of the main Aspergillus fungi relative to toxins occurrence in foods,which revealed the signal transduction mechanisms of their involvement in growth and development,toxin production,and response to light,anticipating providing theoretical guidance on developing control and prevention technologies for mycotoxin contamination in agricultural products to ensure food safety. 展开更多
关键词 functional genes ASPERGILLUS AFLATOXIN DEVELOPMENT
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Innovative gene delivery systems for retinal disease therapy
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作者 Hongguang Wu Ling Dong +2 位作者 Shibo Jin Yongwang Zhao Lili Zhu 《Neural Regeneration Research》 2026年第2期542-552,共11页
The human retina,a complex and highly specialized structure,includes multiple cell types that work synergistically to generate and transmit visual signals.However,genetic predisposition or age-related degeneration can... The human retina,a complex and highly specialized structure,includes multiple cell types that work synergistically to generate and transmit visual signals.However,genetic predisposition or age-related degeneration can lead to retinal damage that severely impairs vision or causes blindness.Treatment options for retinal diseases are limited,and there is an urgent need for innovative therapeutic strategies.Cell and gene therapies are promising because of the efficacy of delivery systems that transport therapeutic genes to targeted retinal cells.Gene delivery systems hold great promise for treating retinal diseases by enabling the targeted delivery of therapeutic genes to affected cells or by converting endogenous cells into functional ones to facilitate nerve regeneration,potentially restoring vision.This review focuses on two principal categories of gene delivery vectors used in the treatment of retinal diseases:viral and non-viral systems.Viral vectors,including lentiviruses and adeno-associated viruses,exploit the innate ability of viruses to infiltrate cells,which is followed by the introduction of therapeutic genetic material into target cells for gene correction.Lentiviruses can accommodate exogenous genes up to 8 kb in length,but their mechanism of integration into the host genome presents insertion mutation risks.Conversely,adeno-associated viruses are safer,as they exist as episomes in the nucleus,yet their limited packaging capacity constrains their application to a narrower spectrum of diseases,which necessitates the exploration of alternative delivery methods.In parallel,progress has also occurred in the development of novel non-viral delivery systems,particularly those based on liposomal technology.Manipulation of the ratios of hydrophilic and hydrophobic molecules within liposomes and the development of new lipid formulations have led to the creation of advanced non-viral vectors.These innovative systems include solid lipid nanoparticles,polymer nanoparticles,dendrimers,polymeric micelles,and polymeric nanoparticles.Compared with their viral counterparts,non-viral delivery systems offer markedly enhanced loading capacities that enable the direct delivery of nucleic acids,mRNA,or protein molecules into cells.This bypasses the need for DNA transcription and processing,which significantly enhances therapeutic efficiency.Nevertheless,the immunogenic potential and accumulation toxicity associated with non-viral particulate systems necessitates continued optimization to reduce adverse effects in vivo.This review explores the various delivery systems for retinal therapies and retinal nerve regeneration,and details the characteristics,advantages,limitations,and clinical applications of each vector type.By systematically outlining these factors,our goal is to guide the selection of the optimal delivery tool for a specific retinal disease,which will enhance treatment efficacy and improve patient outcomes while paving the way for more effective and targeted therapeutic interventions. 展开更多
关键词 adeno-associated viruses delivery systems gene delivery gene therapy LENTIVIRUS nanoparticle delivery non-viral delivery retinal disease RETINA small molecular delivery
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Preliminary Study on Screening Loquat Hybrid Seedlings for Flesh Color Using PSY Gene Molecular Markers
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作者 Ling LIN Zhenyu PENG +9 位作者 Wei SONG Jianbing HE Zhuoxi LI Shousheng ZHONG Meng CHEN Danli WEI Xinyue YU Xiaolei JIAO Liang CHEN Lun SU 《Asian Agricultural Research》 2026年第2期27-29,共3页
[Objectives]To distinguish loquat flesh color,thereby guiding early-age selection in loquat hybrid progeny.[Methods]Molecular markers based on the phytoene synthase gene(PSY)of loquat were applied to a hybrid progeny ... [Objectives]To distinguish loquat flesh color,thereby guiding early-age selection in loquat hybrid progeny.[Methods]Molecular markers based on the phytoene synthase gene(PSY)of loquat were applied to a hybrid progeny population derived from a cross between‘Zaozhong 6’and a local wild white-fleshed loquat resource‘DB1’.[Results]Among the 49 hybrid progeny,24 were identified as white-fleshed loquat resources and 25 as yellow-fleshed loquat resources.[Conclusions]The molecular marker of the PSY gene can effectively distinguish loquat flesh color and is of significant importance for guiding early-age selection in loquat hybrid breeding. 展开更多
关键词 PSY gene Molecular MARKER LOQUAT FLESH color
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The role of Hox genes in shaping embryonic external morphology of the primitive insect Thermobia domestica(Zygentoma)
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作者 Hu-Na Lu Peiyan Zhang +9 位作者 Yifan Wang Kai Luo Ziyu Yan Mei Zeng Ya-Nan Lv Shali Bai Jiaming Zeng Sheng Li Yu Bai Yun-Xia Luan 《Insect Science》 2026年第1期131-146,共16页
Insects represent one of the most evolutionarily successful groups,with their diversity hypothesized to be related to the regulatory roles of Hox genes,a set of related genes encoding homeodomain transcription factors... Insects represent one of the most evolutionarily successful groups,with their diversity hypothesized to be related to the regulatory roles of Hox genes,a set of related genes encoding homeodomain transcription factors determining the identity of segments along the anterior-posterior axis of the embryo.However,functional insights into the roles of Hox genes in primitive ametabolous insects,which represent the critical transition from aquatic crustaceans to winged insects,have been limited.In this study,we identified complete protein-coding sequences of 10 Hox genes in the Zygentoma Thermobia domestica,and applied clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR-associated nuclease 9(Cas 9)mediated gene knockout(KO)to decipher their functions.We found that the roles of pb,Dfd,and Scr are vital in specifying the appendages of the head in T.domestica,and these roles are relatively conserved in crustaceans and winged insects.Antp is essential for the development of the prothorax segment and the first pair of legs in T.domestica.Ubx and abd-A fully repress appendage development in the abdomen of T.domestica,which implies a functional switch from crustaceans to insects.Additionally,the role of ftz in segmenting the abdomen of T.domestica suggests it has acquired new functions in primitive insects,beyond its traditional Hox-like roles.Although KOs of lab,Hox3,and Abd-B did not result in obvious external phenotypic changes,they led to a significant decrease in hatching rates and substantial deviations in daily survival numbers compared to the negative control.These findings underscore the indispensable roles of all Hox genes during the embryonic development of T.domestica.Our study sheds new light on the functional evolution of Hox genes in ametabolous insects and enhances our understanding of the genetic underpinnings of insect development and diversification. 展开更多
关键词 EVO-DEVO firebrats Hox genes
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Mechanism of Pleiotropic Gene OsSP3 Regulating Root Development in Rice
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作者 YE Jing LIANG Chuyan +3 位作者 ZHAI Rongrong WU Mingming ZHANG Xiaoming YE Shenghai 《Rice science》 2026年第1期1-4,I0001-I0007,共11页
The shift from seedling transplanting to direct-seeding cultivation in rice demands robust root systems for early seedling establishment and yield stability.While the pleiotropic gene OsSP3(also designated TAC4 or SG2... The shift from seedling transplanting to direct-seeding cultivation in rice demands robust root systems for early seedling establishment and yield stability.While the pleiotropic gene OsSP3(also designated TAC4 or SG2)is known to regulate aboveground traits,including tiller angle,grain size,and panicle development,its function in root morphogenesis remains uncharacterized. 展开更多
关键词 pleiotropic gene seedling transplanting OSSP root development direct seeding cultivation root morphogenesis pleiotropic gene ossp also robust root systems
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