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Association between osteoporosis and rotator cuff tears:evidence from causal inference and colocalization analyses
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作者 Yibin Liu Rong Zhao +7 位作者 Zhiyu Huang Feifei Li Xing Li Kaixin Zhou Kathleen A.Derwin Xiaofei Zheng Hongmin Cai Jinjin Ma 《Bone Research》 2025年第5期1252-1265,共14页
Osteoporosis is a known risk factor for rotator cuff tears(RCTs),but the causal correlation and underlying mechanisms remain unclear.This study aims to evaluate the impact of osteoporosis on RCT risk and investigate t... Osteoporosis is a known risk factor for rotator cuff tears(RCTs),but the causal correlation and underlying mechanisms remain unclear.This study aims to evaluate the impact of osteoporosis on RCT risk and investigate their genetic associations.Using data from the UK Biobank(n=457871),cross-sectional analyses demonstrated that osteoporosis was significantly associated with an increased risk of RCTs(adjusted OR[95%CI]=1.38[1.25–1.52]).A longitudinal analysis of a subset of patients(n=268117)over 11 years revealed that osteoporosis increased the risk of RCTs(adjusted HR[95%CI]=1.56[1.29–1.87]),which is notably varied between sexes in sex-stratified analysis.Causal inference methods,including propensity score matching,inverse probability weighting,causal random forest and survival random forest models further confirmed the causal effect,both from cross-sectional and longitudinal perspectives. 展开更多
关键词 risk factor rotator cuff tears longitudinal analysis causal inference colocalization analyses OSTEOPOROSIS rotator cuff tears rcts genetic associations
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Identification of novel drug targets for diabetic retinopathy:proteome-wide mendelian randomization and colocalization analyses
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作者 杨少鹏 朱梓瑜 +2 位作者 刘日乾 黄文勇 王伟 《Eye Science》 2024年第1期26-44,共19页
Background:Diabetic retinopathy(DR)urgently needs novel and effective therapeutic targets.Integrated analyses of plasma proteomic and genetic markers can clarify the causal relevance of proteins and discover novel tar... Background:Diabetic retinopathy(DR)urgently needs novel and effective therapeutic targets.Integrated analyses of plasma proteomic and genetic markers can clarify the causal relevance of proteins and discover novel targets for diseases,but no systematic screening for DR has been performed.Methods:Summary statistics of plasma protein quantitative trait loci(pQTL)were derived from two extensive genome-wide analysis study(GWAS)datasets and one systematic review,with over 100 thousand participants covering thousands of plasma proteins.DR data were sourced from the largest FinnGen study,comprising 10,413 DR cases and 308,633 European controls.Genetic instrumental variables were identified using multiple filters.In the two-sample MR analysis,Wald ratio and inverse variance-weighted(IVW)MR were utilized to investigate the causality of plasma proteins with DR.Bidirectional MR,Bayesian Co-localization,and phenotype scanning were employed to test for potential reverse causality and confounding factors in the main MR analyses.By systemically searching druggable gene lists,the ChEMBL database,DrugBank,and Gene Ontology database,the druggability and relevant functional pathways of the identified proteins were systematically evaluated.Results:Genetically predicted levels of 24 proteins were significantly associated with DR risk at a false discovery rate<0.05 including 11 with positive associations and 13 with negative associations.For each standard deviation increase in plasm protein levels,the odds ratios(ORs)for DR varied from 0.51(95%CI:0.36-0.73;P=2.22×10-5)for tubulin polymerization-promoting protein family member 3(TPPP3)to 2.02(95%CI:1.44-2.83;P=5.01×10-5)for olfactomedin like 3(OLFML3).Bidirectional MR indicated there was no reverse causality that interfered with the results of the main MR analyses.Four proteins exhibited strong co-localization evidence(PH4≥0.8):cytoplasmic tRNA synthetase(WARS),acrosin binding protein(ACRBP),and intercellular adhesion molecule 1(ICAM1)were negatively associated with DR risk,while neurogenic locus notch homolog protein 2(NOTCH2)showed a positive association.No confounding factors were detected between pQTLs and DR according to the phenotypic scan.Drugability assessments highlighted 6 proteins already in drug development endeavor and 18 novel drug targets,with metalloproteinase inhibitor 3(TIMP)currently in phase I clinical trials for DR.GO analysis identified 18 of 24 plasma proteins enriching 22 pathways related to cell differentiation and proliferation regulation.Conclusions:Twenty-four promising drug targets for DR were identified,including four plasma proteins with particular co-localization evidence.These findings offer new insights into DR's etiology and therapeutic targeting,exemplifying the value of genomic and proteomic data in drug target discovery. 展开更多
关键词 plasma proteome mendelian randomization therapeutic targets genome-wide analysis study colocalization analysis diabetic retinopathy
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Causal associations of plasma proteins with lung squamous cell carcinoma risk:a proteome-wide Mendelian randomization and colocalization analysis
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作者 Qing Wang Xiaofei Xue +3 位作者 Xinyu Ling Yukuan Lang Suyu Wang Gang Liu 《Clinical Cancer Bulletin》 2024年第1期64-73,共10页
Background Lung squamous cell carcinoma(LUSC)is a major subtype of non-small cell lung cancer with a high mortality rate.Identifying causal plasma proteins associated with LUSC could provide new insights into the path... Background Lung squamous cell carcinoma(LUSC)is a major subtype of non-small cell lung cancer with a high mortality rate.Identifying causal plasma proteins associated with LUSC could provide new insights into the pathophysiology of the disease and potential therapeutic targets.This study aimed to identify plasma proteins causally linked to LUSC risk using proteome-wide Mendelian randomization(MR)and colocalization analyses.Methods Proteome-wide MR analysis was conducted using data from the UK Biobank Pharma Proteomics Project and deCODE genetics.Summary-level data for LUSC were obtained from the ILCCO Consortium,the FinnGen study,and a separate GWAS study.A total of 1,046 shared protein quantitative trait loci(pQTLs)were analyzed.Sensitivity analyses included the HEIDI test for horizontal pleiotropy and colocalization analysis to validate the causal associations.Results MR analysis identified six plasma proteins associated with LUSC risk:HSPA1L,PCSK7,POLI,SPINK2,TCL1A,and VARS.HSPA1L(OR=0.47;95%CI:0.34–0.65;P=4.89×10^(–6)),SPINK2(OR=0.68;95%CI:0.58–0.80;P=3.17×10^(–6)),and VARS(OR=0.44;95%CI:0.31–0.63;P=5.94×10^(–6))were associated with a decreased risk of LUSC.Conversely,PCSK7(OR=1.37;95%CI:1.21–1.56;P=1.40×10^(–6)),POLI(OR=4.50;95%CI:2.25–9.00;P=2.13×10–5),and TCL1A(OR=1.72;95%CI:1.34–2.21;P=1.89×10–5)were associated with an increased risk.The SMR analysis and HEIDI test confirmed the robustness of these associations.HSPA1L,SPINK2,and VARS showed significant inverse associations,with strong colocalization evidence for TCL1A(PPH4=0.817).Conclusions This study identified six plasma proteins potentially causal for LUSC risk.HSPA1L,SPINK2,and VARS are associated with decreased risk,while PCSK7,POLI,and TCL1A are linked to increased risk.These findings provide new insights into LUSC pathogenesis and highlight potential targets for therapeutic intervention. 展开更多
关键词 Lung squamous cell carcinoma Proteome-wide Mendelian randomization Plasma proteins Genetic instruments colocalization analysis HSPA1L PCSK7 POLI SPINK2 TCL1A VARS
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The eQTL colocalization and transcriptome‑wide association study identify potentially causal genes responsible for economic traits in Simmental beef cattle 被引量:6
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作者 Wentao Cai Yapeng Zhang +9 位作者 Tianpeng Chang Zezhao Wang Bo Zhu Yan Chen Xue Gao Lingyang Xu Lupei Zhang Huijiang Gao Jiuzhou Song Junya Li 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2023年第5期1909-1925,共17页
Background A detailed understanding of genetic variants that affect beef merit helps maximize the efficiency of breeding for improved production merit in beef cattle.To prioritize the putative variants and genes,we ra... Background A detailed understanding of genetic variants that affect beef merit helps maximize the efficiency of breeding for improved production merit in beef cattle.To prioritize the putative variants and genes,we ran a com-prehensive genome-wide association studies(GWAS)analysis for 21 agronomic traits using imputed whole-genome variants in Simmental beef cattle.Then,we applied expression quantitative trait loci(eQTL)mapping between the genotype variants and transcriptome of three tissues(longissimus dorsi muscle,backfat,and liver)in 120 cattle.Results We identified 1,580 association signals for 21 beef agronomic traits using GWAS.We then illuminated 854,498 cis-eQTLs for 6,017 genes and 46,970 trans-eQTLs for 1,903 genes in three tissues and built a synergistic network by integrating transcriptomics with agronomic traits.These cis-eQTLs were preferentially close to the transcription start site and enriched in functional regulatory regions.We observed an average of 43.5%improvement in cis-eQTL discovery using multi-tissue eQTL mapping.Fine-mapping analysis revealed that 111,192,and 194 variants were most likely to be causative to regulate gene expression in backfat,liver,and muscle,respectively.The transcriptome-wide association studies identified 722 genes significantly associated with 11 agronomic traits.Via the colocalization and Mendelian randomization analyses,we found that eQTLs of several genes were associated with the GWAS signals of agronomic traits in three tissues,which included genes,such as NADSYN1,NDUFS3,LTF and KIFC2 in liver,GRAMD1C,TMTC2 and ZNF613 in backfat,as well as TIGAR,NDUFS3 and L3HYPDH in muscle that could serve as the candidate genes for economic traits.Conclusions The extensive atlas of GWAS,eQTL,fine-mapping,and transcriptome-wide association studies aid in the suggestion of potentially functional variants and genes in cattle agronomic traits and will be an invaluable source for genomics and breeding in beef cattle. 展开更多
关键词 Cattle colocalization eQTL mapping GWAS TWAS
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Colocalization of SOM and NOS in the neurons of raphe nucleiinnervating the pharyngeal muscles in the rats: PRV,SOMandNADPH-d triplelabelingstudy
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作者 包新民 舒斯云 +1 位作者 陈活 姚大卫 《Journal of Medical Colleges of PLA(China)》 CAS 1999年第2期79-82,共4页
Objective: To investigate the colocalization of Somatostatin (SOM ) and NADPH--diaphorase (NADPHd ) of the neurons in raphe nuclei innervating pharyngeal muscles in the rats. Methods: After PRV was injected into the p... Objective: To investigate the colocalization of Somatostatin (SOM ) and NADPH--diaphorase (NADPHd ) of the neurons in raphe nuclei innervating pharyngeal muscles in the rats. Methods: After PRV was injected into the pharyngeal muscles. PRV and SOM immunofluorescence double labeling procedure was completed at first,then proceeded NADPH -d histochemistry. Results: PRV and SOM double--labled cells were present mainly in the nucleus raphe magnus. but some PRV and SOM double labled neurons were found in the other raphe nuclei as well, such as nucleus raphe pallidus. nucleus raphe obsurus, median raphe nucleus and dorsal raphe nucleus.NADPH -d positive neurons were also observed in the raphe nuclei. PRV. SOM and NADPH-d triple labeling neurons were found in the nucleus raphe magnus. Conclusion: It is suggested that the colocalization of SOM and NADPH--d of the neurons in the raphe nuclei innervating pharyngeal muscles may play an important role in the coordination of the pharyngeal motility. 展开更多
关键词 RAPHE nuclei somatostatin NADPH-D PSEUDORABIES virus colocalization PHARYNX
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Deciphering the causal relationship between atopic dermatitis and lymphoma via multi-omics Mendelian randomization and colocalization analyses
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作者 Xuejiao Song Birao Fan +3 位作者 Jingkai Xu Yujun Sheng Xianbo Zuo Yong Cui 《Chinese Medical Journal》 2025年第8期994-996,共3页
To the Editor:Atopic dermatitis(AD)is a chronic inflammatory skin condition marked by recurrent eczematous lesions and intense pruritus,affecting approximately 15–20%of children and up to 10%of adults worldwide.[1]Th... To the Editor:Atopic dermatitis(AD)is a chronic inflammatory skin condition marked by recurrent eczematous lesions and intense pruritus,affecting approximately 15–20%of children and up to 10%of adults worldwide.[1]The presence of AD significantly impairs patient quality of life and imposes substantial economic burdens on society.In recent years,the potential link between AD and lymphoma has attracted considerable attention from researchers and clinicians.Lymphoma,a malignancy of the lymphatic system,poses significant health risks due to its high mortality potential.[2]However,observational studies investigating the potential correlation between AD and lymphoma have yielded inconsistent results.Consequently,the association between AD and lymphoma remains controversial and warrants further investigation. 展开更多
关键词 LYMPHOMA multi omics chronic inflammatory skin condition colocalization analyses atopic dermatitis Mendelian randomization eczematous lesions
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Integrative pigGTEx resource with GWAS reveals genetic mechanism underlying semen quality in boars
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作者 Xuehua Li Qing Lin +7 位作者 Zhanwei Zhuang Kai Rao Zhili Li Xiuguo Shang Panjie Xia Lin Zhu Zhe Zhang Yunxiang Zhao 《Journal of Animal Science and Biotechnology》 2025年第5期2040-2053,共14页
Background Semen quality is one of the most important indicators of boar reproductive performance.In the past,boar breeding has mostly emphasized characteristics such as lean meat percentage,feed conversion efficiency... Background Semen quality is one of the most important indicators of boar reproductive performance.In the past,boar breeding has mostly emphasized characteristics such as lean meat percentage,feed conversion efficiency,and growth rate,while overlooking the genetic improvement of reproductive traits.This study employs advanced multi-omics approaches,such as transcriptome-wide association studies(TWAS)and colocalization between genome-wide association studies(GWAS)and expression quantitative trait loci(eQTLs),to provide a comprehensive understanding of the genetic mechanisms governing semen quality traits in boars.Results Here,we collected 190,000 ejaculate records across 11 semen quality traits from 3,604 Duroc boars.The heritability of semen quality traits ranged from 0.095 to 0.343.Genetic correlations between semen quality traits varied from−0.802 to 0.661,and phenotypic correlations ranged from−0.833 to 0.776.Single-trait GWAS identified 19 independent variants,corresponding to 13 quantitative trait loci(QTLs).By integrating PigGTEx and FAANG resources,we combined TWAS and colocalization analyses to reveal genetic regulation of semen quality traits.Notably,both GWAS and colocalization analyses pinpointed the DCAF12 as a crucial gene associated with multiple semen quality traits.Additionally,the ZSCAN9 gene and the variant rs322211455 were found to significantly affect sperm motility(SPMOT),possibly through hypothalamic-pituitary-gonadal axis.PheWAS further highlighted an association between rs322211455 and sperm abnormality rate,demonstrating the crucial role of ZSCAN9 in male fertility.Conclusion This study reveals the genetic basis and regulatory mechanisms underlying semen quality traits in Duroc boars,identifying key candidate genes such as DCAF12 and ZSCAN9.These findings provide important insight into the genetic regulation of semen quality in boars. 展开更多
关键词 BOAR colocalization GWAS Semen quality TWAS
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Resolving the spatial and cellular architecture of intra-tumor heterogeneity by multi-region dissection of lung adenocarcinoma
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作者 Song Mei Xiaolei Wang +12 位作者 Mengmeng Zhao Qing Huang Yixuan Huang Mingming Su Xinlei Zhang Xu Wang Xueyu Hao Tianning Wang Yanhua Wu Yuanhui Ma Jingnan Wang Peng Zhang Yan Zheng 《Journal of Genetics and Genomics》 2025年第9期1121-1132,共12页
Although the spatial characteristics within the tumor microenvironment of lung adenocarcinoma(LUAD)have been identified,the mechanisms by which these factors promote LUAD progression and immune evasion remain unclear.... Although the spatial characteristics within the tumor microenvironment of lung adenocarcinoma(LUAD)have been identified,the mechanisms by which these factors promote LUAD progression and immune evasion remain unclear.Using spatial transcriptomics and single-cell RNA-sequencing data from multi-regional LUAD biopsies consisting of tumor core,tumor edge,and normal area,we sought to delineate the spatial heterogeneity and driving factors of cell colocalization.Two cancer cell sub-clusters(Cancer_c1 and Cancer_c2),associated with LUAD initiation and metastasis,respectively,exhibit distinct spatial distributions and immune cell colocalizations.In particular,Cancer_c1,enriched within the tumor core,could directly interact with B cells or indirectly recruit B cells through macrophages.Conversely,Cancer_c2 enriched within the tumor edge exhibits colocalization with CD8^(+)T cells.Collectively,our work elucidates the spatial distribution of cancer cell subtypes and their interaction with immune cells in the core and edge of LUAD,providing insights for developing therapeutic strategies for cancer intervention. 展开更多
关键词 Lung adenocarcinoma Spatial transcriptomics ScRNA-Seq Intra-tumoral heterogeneity Cell colocalizations
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ezQTL:A Web Platform for Interactive Visualization and Colocalization of QTLs and GWAS Loci
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作者 Tongwu Zhang Alyssa Klein +2 位作者 Jian Sang Jiyeon Choi Kevin M.Brown 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2022年第3期541-548,共8页
Genome-wide association studies(GWAS)have identified thousands of genomic loci associated with complex diseases and traits,including cancer.The vast majority of common traitassociated variants identified via GWAS fall... Genome-wide association studies(GWAS)have identified thousands of genomic loci associated with complex diseases and traits,including cancer.The vast majority of common traitassociated variants identified via GWAS fall in non-coding regions of the genome,posing a challenge in elucidating the causal variants,genes,and mechanisms involved.Expression quantitative trait locus(eQTL)and other molecular QTL studies have been valuable resources in identifying candidate causal genes from GWAS loci through statistical colocalization methods.While QTL colocalization is becoming a standard analysis in post-GWAS investigation,an easy web tool for users to perform formal colocalization analyses with either user-provided or public GWAS and eQTL datasets has been lacking.Here,we present ezQTL,a web-based bioinformatic application to interactively visualize and analyze genetic association data such as GWAS loci and molecular QTLs under different linkage disequilibrium(LD)patterns(1000 Genomes Project,UK Biobank,or user-provided data).This application allows users to perform data quality control for variants matched between different datasets,LD visualization,and two-trait colocalization analyses using two state-of-the-art methodologies(eCAVIAR and HyPrColoc),including batch processing.ezQTL is a free and publicly available cross-platform web tool,which can be accessed online at https://analysistools.cancer.gov/ezqtl. 展开更多
关键词 Genome-wide association study Expression quantitative trait locus colocalization Linkage disequilibrium VISUALIZATION
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两个色原酮衍生物的二维谱研究 被引量:1
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作者 易以军 杨大龙 +3 位作者 曹正中 曹圆 吴永平 赵守训 《波谱学杂志》 CAS CSCD 北大核心 1998年第3期285-289,共5页
应用2DNMR技术研究了土茯苓中两个新色原酮衍生物的结构,证实二维谱技术(COLOC,1H-1HCOSY,2DINADEQUATE)可用于确定该类化合物的取代基位置.同时也有助于确定该类化合物的13C、1HNMR谱的... 应用2DNMR技术研究了土茯苓中两个新色原酮衍生物的结构,证实二维谱技术(COLOC,1H-1HCOSY,2DINADEQUATE)可用于确定该类化合物的取代基位置.同时也有助于确定该类化合物的13C、1HNMR谱的详细归属. 展开更多
关键词 土茯苓 色原酮 异黄酮 二维谱 COLOC 中药材
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用COLOC谱研究线型二氢吡喃香豆素Pd—C—I酰基连接位置 被引量:1
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作者 孔令义 闵知大 +1 位作者 李铣 裴月湖 《波谱学杂志》 CAS CSCD 1996年第4期353-358,共6页
用COLOC技术并结合1H-1HCOSY谱对线型二氢吡喃香豆素类化合物Pd—C—I的化学结构进行了深入研究.证实该类化合物酰基连接位置可用COLOC谱确定.这对这类化合物的结构研究和构效关系的探讨均有重要意义,另外利... 用COLOC技术并结合1H-1HCOSY谱对线型二氢吡喃香豆素类化合物Pd—C—I的化学结构进行了深入研究.证实该类化合物酰基连接位置可用COLOC谱确定.这对这类化合物的结构研究和构效关系的探讨均有重要意义,另外利用2DNMR修正了文献中对Pd—C—I部分碳氢信号归属的错误. 展开更多
关键词 线型 二氢吡喃 香豆素 COLOC 酰基连接
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Induction of endoplasmic reticulum-derived oxidative stress by an occult infection related S surface antigen variant 被引量:5
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作者 In-Kyung Lee Seoung-Ae Lee +2 位作者 Hong Kim You-Sub Won Bum-Joon Kim 《World Journal of Gastroenterology》 SCIE CAS 2015年第22期6872-6883,共12页
AIM: To investigate the mechanism of endoplasmic reticulum(ER) stress induction by an occult infection related hepatitis B virus S surface antigen(HBsAg)variant.METHODS: We used an HBsAg variant with lower secretion c... AIM: To investigate the mechanism of endoplasmic reticulum(ER) stress induction by an occult infection related hepatitis B virus S surface antigen(HBsAg)variant.METHODS: We used an HBsAg variant with lower secretion capacity, which was a KD variant from a Korean subject who was occultly infected with the genotype C. We compared the expression profiles of ER stress-related proteins between HuH-7 cells transfected with HBsAg plasmids of a wild-type and a KD variant using Western blot.RESULTS: Confocal microscopy indicated that the KD variant had higher levels of co-localization with ER than the wild-type HBsAg. The KD variant upregulated ER stress-related proteins and induced reactive oxygen species(ROS) compared to the wildtype via an increase in calcium. The KD variant also down-regulated anti-oxidant proteins(HO-1, catalase and SOD) compared to the wild-type, which indicates positive amplification loops of the ER-ROS axis. The KD variant also induced apoptotic cell death via the upregulation of caspase proteins(caspase 6, 9 and 12).Furthermore, the KD variant induced a higher level of nitric oxide than wild-type HBsAg via the up-regulation of the iNOS protein.CONCLUSION: Our data indicate that occult infection related HBsAg variants can lead to ER-derived oxidative stress and liver cell death in HuH-7 cells. 展开更多
关键词 Endoplasmic reticulum oxidative stress Hepatitis B virus KD variant colocalization Reactive oxidative species Apoptotic cell death
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Coexisting tubular adenoma with a neuroendocrine carcinoma of colon allowing early surgical intervention and implicating a shared stem cell origin 被引量:3
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作者 Mahmoud L Soliman Ashish Tiwari Qing Zhao 《World Journal of Gastroenterology》 SCIE CAS 2017年第6期1106-1112,共7页
High-grade colonic neuroendocrine carcinomas (NECs) are uncommon but extremely aggressive. Their co-existence with tubular adenoma (TA) has rarely been reported. We present a 68-year-old man who was found on routine c... High-grade colonic neuroendocrine carcinomas (NECs) are uncommon but extremely aggressive. Their co-existence with tubular adenoma (TA) has rarely been reported. We present a 68-year-old man who was found on routine colonoscopy to have multiple colorectal TAs and an ulcerated lesion in the ascending colon. Microscopically, a poorly-differentiated invasive carcinoma juxtaposed with a TA was identified. Differential diagnosis included a poorly-differentiated adenocarcinoma, medullary carcinoma, high-grade NEC and lymphoma. The immunohistochemical profile showed positive staining for keratins, synaptophysin and chromogranin but negative for LCA, CDX2, CK7, CK20, TTF-1 and PSA, supporting the NEC diagnosis. Upon subsequent laparoscopic right hemicolectomy, the tumor was identified as a 3.0 cm umbilicated and ulcerated mass with an adjacent TA. Both TA and NEC showed positive staining for β-catenin indicating a shared colonic origin. The mitotic counts (77/10 high power fields) and a high proliferation rate (75% by Ki-67) corroborated a high-grade stratification. Mutational analysis indicated a wild-type BRAF and KRAS with mismatch repair proficiency. The AJCC (7<sup>th</sup> edition) pathologic stage is pT3, pN0, pMx. The patient received adjuvant chemotherapy with cisplatin/etoposides for three cycles and will be followed up for a year to detect recurrence. In conclusion, the co-existence of TA with high grade-NEC in our case allowed early identification and intervention of the otherwise asymptomatic but aggressive tumor. In addition, the finding of a high-grade NEC within a large TA in this case suggests a link between the two lesions and could represent a shared stem cell origin. 展开更多
关键词 Neuroendocrine carcinoma Tubular adenoma COLORECTAL colocalization
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Mitochondrial division inhibitor 1 protects cortical neurons from excitotoxicity:a mechanistic pathway 被引量:2
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作者 Kuai Zhou Hai-Yuan Yang +8 位作者 Peng-Yu Tang Wei Liu Yong-Jun Luo Bin Lv Jian Yin Tao Jiang Jian Chen Wei-Hua Cai Jin Fan 《Neural Regeneration Research》 SCIE CAS CSCD 2018年第9期1552-1560,共9页
Mitochondrial division inhibitor 1(Mdivi-1) is a selective cell-permeable inhibitor of dynamin-related protein-1(Drp1) and mitochondrial division.To investigate the effect of Mdivi-1 on cells treated with glutamat... Mitochondrial division inhibitor 1(Mdivi-1) is a selective cell-permeable inhibitor of dynamin-related protein-1(Drp1) and mitochondrial division.To investigate the effect of Mdivi-1 on cells treated with glutamate,cerebral cortex neurons isolated from neonatal rats were treated with 10 m M glutamate for 24 hours.Normal cultured cells and dimethyl sulfoxide-cultured cells were considered as controls.Apoptotic cells were detected by flow cytometry.Changes in mitochondrial morphology were examined by electron microscopy.Drp1,Bax,and casp ase-3 expression was evaluated by western blot assays and immunocytochemistry.Mitochondrial membrane potential was detected using the JC-1 probe.Twenty-four hours after 10 m M glutamate treatment,Drp1,Bax and caspase-3 expression was upregulated,Drp1 and Bax were translocated to mitochondria,mitochondrial membrane potential was decreased and the rate of apoptosis was increased.These effects were inhibited by treatment with 50 μM Mdivi-1 for 2 hours.This finding indicates that Mdivi-1 is a candidate neuroprotective drug that can potentially mitigate against neuronal injury caused by glutamate-induced excitotoxicity. 展开更多
关键词 nerve regeneration mitochondrial division inhibitor 1 neurons apoptosis mitochondria division dynamin-related protein-I phospho-dynamin-related protein-1 Bax GLUTAMATE colocalization neural regeneration
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Enduring alterations in hippocampal astrocytesynaptic proximity following adolescent alcohol exposure: reversal by gabapentin 被引量:1
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作者 Kati L.Healey Sandra Kibble +8 位作者 Sierra Hodges Kathryn J.Reissner Anze Testen Tiffany A.Wills Shawn K.Acheson Benjamin M.Siemsen John A.McFaddin Michael D.Scofield H.Scott Swartzwelder 《Neural Regeneration Research》 SCIE CAS CSCD 2020年第8期1496-1501,共6页
Adolescent alcohol abuse is a substantive public health problem that has been the subject of intensive study in recent years.Despite reports of a wide range of effects of adolescent intermittent ethanol(AIE)exposure o... Adolescent alcohol abuse is a substantive public health problem that has been the subject of intensive study in recent years.Despite reports of a wide range of effects of adolescent intermittent ethanol(AIE)exposure on brain and behavior,little is known about the mechanisms that may underlie those effects,and even less about treatments that might reverse them.Recent studies from our laboratory have indicated that AIE produced enduring changes in astrocyte function and synaptic activity in the hippocampal formation,suggesting the possibility of an alteration in astrocyte-neuronal connectivity and function.We utilized astrocyte-specific,membrane restricted viral labeling paired with immunohistochemistry to perform confocal single cell astrocyte imaging,three-dimensional reconstruction,and quantification of astrocyte morphology in hippocampal area CA1 from adult rats after AIE.Additionally,we assessed the colocalization of astrocyte plasma membrane labeling with immunoreactivity for AMPA-(α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid)glutamate receptor 1,an AMPA receptor subunit and established neuronal marker of excitatory synapses,as a metric of astrocyte-synapse proximity.AIE significantly reduced the colocalization of the astrocyte plasma membrane with synaptic marker puncta in adulthood.This is striking in that it suggests not only an alteration of the physical association of astrocytes with synapses by AIE,but one that lasts into adulthood-well after the termination of alcohol exposure.Perhaps even more notable,the AIE-induced reduction of astrocyte-synapse interaction was reversed by sub-chronic treatment with the clinically used agent,gabapentin(Neurontin),in adulthood.This suggests that a medication in common clinical use may have the potential to reverse some of the enduring effects of adolescent alcohol exposure on brain function.All animal experiments conducted were approved by the Duke University Institutional Animal Care and Use Committee(Protocol Registry Number A159-18-07)on July 27,2018. 展开更多
关键词 ADOLESCENT ALCOHOL ASTROCYTE astrocyte morphology astrocyte-neuronal colocalization CA1 GABAPENTIN GluA1 hippocampus tripartite synapse
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Rabies virus co-localizes with early(Rab5) and late(Rab7) endosomal proteins in neuronal and SH-SY5Y cells 被引量:4
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作者 Waqas Ahmad Yingying Li +5 位作者 Yidi Guo Xinyu Wang Ming Duan Zhenhong Guan Zengshan Liu Maolin Zhang 《Virologica Sinica》 SCIE CAS CSCD 2017年第3期207-215,共9页
Rabies virus(RABV) is a highly neurotropic virus that follows clathrin-mediated endocytosis and p H-dependent pathway for trafficking and invasion into endothelial cells. Early(Rab5, EEA1) and late(Rab7, LAMP1) endoso... Rabies virus(RABV) is a highly neurotropic virus that follows clathrin-mediated endocytosis and p H-dependent pathway for trafficking and invasion into endothelial cells. Early(Rab5, EEA1) and late(Rab7, LAMP1) endosomal proteins play critical roles in endosomal sorting, maturity and targeting various molecular cargoes, but their precise functions in the early stage of RABV neuronal infection remain elusive. In this study, the relationship between enigmatic entry of RABV with these endosomal proteins into neuronal and SH-SY5 Y cells was investigated.Immunofluorescence, TCID_(50) titers, electron microscopy and western blotting were carried out to determine the molecular interaction of the nucleoprotein(N) of RABV with early or late endosomal proteins in these cell lines. The expression of N was also determined by down-regulating Rab5 and Rab7 in both cell lines through RNA interference. The results were indicative that N proficiently colocalized with Rab5/EEA1 and Rab7/LAMP1 in both cell lines at 24 and 48 h post-infection, while N titers significantly decreased in early infection of RABV. Down-regulation of Rab5 and Rab7 did not inhibit N expression, but it prevented productive infection via blocking the normal trafficking of RABV in a low pH environment. Ultrathin sections of cells studied by electron microscope also verified the close association of RABV with Rab5 and Rab7 in neurons. From the data it was concluded that primary entry of RABV strongly correlates with the kinetics of Rab-proteins present on early and late vesicles, which provides helpful clues to explain the early events of RABV in nerve cells. 展开更多
关键词 Rab5 Rab7 rabies virus(RABV) endosomes colocalization
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Role of Interleukin 17A in Aortic Valve Inflammation in Apolipoprotein E-deficient Mice 被引量:1
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作者 Fa-yuan LIU Peng BAI +3 位作者 Ye-fan JIANG Nian-guo DONG Geng LI Chong CHU 《Current Medical Science》 SCIE CAS 2020年第4期729-738,共10页
Summary:Interleukin 17A(IL 17A)is reported to be involved in many inflammatory processes,but its role in aortic valve diseases remains unknown.We examined the role of IL17A based on an ApoE^-/-mouse model with strateg... Summary:Interleukin 17A(IL 17A)is reported to be involved in many inflammatory processes,but its role in aortic valve diseases remains unknown.We examined the role of IL17A based on an ApoE^-/-mouse model with strategies as fed with high-fat diet or treated with ILI7A monoclonal antibody(mAb).12 weeks of high-fat diet feeding can elevate cytokines secretion,inflammatory cells infiltration and myofibroblastic transition of valvular interstitial cells(VICs)in aortic valve.Moreover,diet-induction accelerated interleukin 17 receptor A(IL17RA)activation in VICs.In an IL17A inhibition model,the treatment group was intra-peritoneally injected with anti-IL17A mAb while controls received irrelevant antibody.Functional blockade of IL17A markedly reduced cellular infiltration and transition in aortic valve.To investigate potential mechanisms,NF-kB was co-stained in IL17RA^+VICs and IL17RA macrophages,and further confirmed by Western blotting in VICs.High-fat diet could activate NF-kB nuclear translocation in IL17RA^+VICs and IL17RA^+macrophages and this process was depressed after IL17A mAb-treatment.In conclusion,high-fat diet can lead to IL17A upregulation,VICs myofibroblastic transition and inflammatory cells infiltration in the aortic value of ApoE^-/-mice.Blocking IL17A with IL17A mAb can alleviate aortic valve inflammatory states. 展开更多
关键词 aortic valve inflammation interleukin 17A NF-kB pathway intensity correlation analysis colocalization
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Synthesis of a cationic poly(p-phenylenevinylene) derivative for Iysosome-specific and long-term imaging 被引量:1
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作者 Zhuo Chen Huanxiang Yuan +2 位作者 Haiyan Liang Chichong Lu Xiaolan Liu 《Chinese Chemical Letters》 SCIE CAS CSCD 2018年第2期339-341,共3页
The development of long-term imaging agents and subcellular imaging materials is of great importance in the research of cancer cell behaviors. In this work, a cationic poly(p-phenylenevinylene) derivative(PPV) is ... The development of long-term imaging agents and subcellular imaging materials is of great importance in the research of cancer cell behaviors. In this work, a cationic poly(p-phenylenevinylene) derivative(PPV) is designed and synthesized to link quaternized N-methyl-imidazole groups as pendants which endow the polymer to bear positive charges. Absorption and fluorescence emission spectra of PPV display a large Stokes shift of 102 nm which is much larger than the commercial cell dyes. Positively charged polymer could adsorb onto the surface of cells via electrostatic interactions followed by cell endocytosis process to enter cells. Importantly, PPV barely has influence on the cell viability through cytotoxicity analysis. The colocalization data demonstrates that PPV and commercial lysosome-specific dye are highly colocalized in the same region, indicating that the green fluorescent PPV mainly distributes in the lysosomes. Moreover, the continuous imaging investigation shows that PPV could stay in cells for more than seven days while the commercial Lyso-Tracker would be extruded by cells after three days. PPV exhibits superior capabilities including strong fluorescence, large Stokes shift, good biocompatibility and high photostablity, which has great potential in the applications of cellular process monitoring. 展开更多
关键词 Cationic polymer Lysosome Long-term imaging Fluorescence colocalization
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苯并二氢呋喃类木脂素NMR谱的研究 被引量:4
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作者 高峰 李铣 +1 位作者 吴立军 李文 《波谱学杂志》 CAS CSCD 北大核心 1997年第5期425-429,共5页
用2DHMR技术研究了从水飞蓟素(Silymarin)中分离的一个苯并二氢呋喃类木脂素的结构,证实该类化合物的取代基位置可用COLOC谱确定.同时研究了该类化合物以DMSO-d6为溶剂的PMR谱的特征.另外对Balanophonin的PMR谱进行了详细归属.
关键词 苯并二氢呋喃类 木脂素 取代位置 COLOC NMR
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核磁COLOC技术在一类多取代苯结构鉴定中的应用一类多取代苯结构的COLOC鉴定 被引量:2
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作者 姚远 施志坚 杨国娟 《波谱学杂志》 CAS CSCD 1995年第3期269-276,共8页
通过非环前体的分子内成环反应,可合成一类多取代苯,对这类产物进行结构鉴定,有助于了解整个反应历程和机理。但取代基增多,势必导致各结构因素变得复杂,难以从各芳碳的经验计算式去推测各取代基所处的相对位置,而以一般的光、波... 通过非环前体的分子内成环反应,可合成一类多取代苯,对这类产物进行结构鉴定,有助于了解整个反应历程和机理。但取代基增多,势必导致各结构因素变得复杂,难以从各芳碳的经验计算式去推测各取代基所处的相对位置,而以一般的光、波谱方法也较难获得这类结构信息。实验表明,核磁COLOC技术是确定这类产物各取代基相对位置较为合适的方法,本文以NMR技术对这类产物进行了结构鉴定,并讨论了COLOC技术在确定其各取代基相对位置中的作用;同时通过对产物的结构确认,讨论了产物取代基间的相互作用所导致其芳碳化学位移实测值与经验计算值之间的差异,以及含氟基团对邻位芳碳的碳氟间三键偶合作用。 展开更多
关键词 COLOC技术 多取代苯 取代基 NMR
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