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Estimating the leaf water content of Coffea arabica L.based on hyperspectral reflectance and dataset construction
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作者 Xiaogang Liu Kailun Peng +6 位作者 Shaomin Chen Yunfei Tuo Shuai Zhang Shuai Tan Fangchuan Lou Jinxue Li Zhenjia Chen 《International Journal of Agricultural and Biological Engineering》 2025年第5期287-297,共11页
Currently,irrigation decisions in coffee cultivation primarily rely on empirical knowledge,resulting in inefficient practices.Combining real-time leaf water content(LWC)data can help improve the accuracy of the irriga... Currently,irrigation decisions in coffee cultivation primarily rely on empirical knowledge,resulting in inefficient practices.Combining real-time leaf water content(LWC)data can help improve the accuracy of the irrigation planning.Spectral remote sensing is a fast,reliable,and non-invasive method to detect vegetation moisture content.In this study,a model to estimate the LWC of Coffea arabica L.was built using hyperspectral reflectance of the canopy under various irrigation levels.For this purpose,common spectral indices,two-band spectral indices[ratio spectral index(RSI);difference spectral index(DSI);and normalized difference spectral index(NDSI)],and three-band spectral indices were constructed.Feature bands were extracted using the successive projections algorithm(SPA).Optimal spectral indices were extracted using the correlation coefficient method,and the feature wavebands and spectral indices were combined into five datasets.These datasets were split into modeling and validation datasets by sample set partitioning based on the joint x-y distance(SPXY)algorithm.A linear model[partial least squares regression(PLSR)]and three non-linear models[support vector machine(SVM);extreme learning machine(ELM);back propagation artificial neural network(BPANN)]were built to estimate LWC of Coffea arabica L.The results indicated that the non-linear models surpassed the linear model.The accuracy was the highest when the modeling was performed using the dataset combination 5.Among various modeling methods,the predictive performance of ELM was the best(modeling dataset:R^(2)=0.745,RMSE=2.241%,RRMSE=3.482%;validation dataset:R^(2)=0.721,RMSE=2.142%,RRMSE=3.364%).ELM outperformed PLSR,SVM,and BPANN in LWC retrieval.The obtained results indicated that the dataset built by the combined use of different methods was superior to those from a single data source in accuracy.This study provides a scientific basis for the quantitative diagnosis of coffee tree water status,with significant implications for optimizing field irrigation management. 展开更多
关键词 spectral index feature band DATASET coffea arabica l. leaf water content machine learning
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Mechanism of Action of Low Dose Preparations from <i>Coffea arabica</i>, <i>Gelsemium</i>and <i>Veratrum</i>Based on <i>in Vivo</i>and <i>in Vitro</i>Neurophysiological Findings 被引量:1
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作者 Wilfried Dimpfel Andreas Biller 《Journal of Behavioral and Brain Science》 2015年第9期368-380,共13页
Low dose remedies are widely administered in medicine. We used Tele-Stereo-EEG and the hippocampal slice preparation to measure physiological effects of orally given Coffea D6 (40 mg/kg), Gelsemium D4 (10 mg/kg) and V... Low dose remedies are widely administered in medicine. We used Tele-Stereo-EEG and the hippocampal slice preparation to measure physiological effects of orally given Coffea D6 (40 mg/kg), Gelsemium D4 (10 mg/kg) and Veratrum D6 (30 mg/kg) in rats. Adult rats were implanted with electrodes positioned stereotactically into four brain regions. Changes in field potentials were transmitted wirelessly. After frequency analysis data from 6 - 8 animals were averaged. For in vitro testing, preparations were superfused directly on hippocampal slices. Stimulation of Schaffer Collaterals by single stimuli (SS) or theta burst stimulation (TBS) resulted in stable population spike amplitudes. All three low dose preparations produced decreases of spectral power. Statistically significant changes were observed in delta, theta and alpha2 spectral power. In the hippocampal slice preparation Coffea facilitated signal transfer presumably by enhancing glutamate AMPA receptor transmission. Gelsemium showed a similar effect, but only after single shock stimulation. Opposite to this, attenuation of the electric pathway was recognized after theta burst stimulation due to AMPA receptor and glutamate metabotropic II receptor mediated transmission. Veratrum was able to attenuate glutamatergic due to receptor-mediated signalling sensitive to AMPA and NMDA. The results strongly speak in favour of the existence of biologically active molecules in these low dose preparations. 展开更多
关键词 NEUROPHYSIOlOGY Rat Gelsemium sempervirens Veratrum AlBUM coffea arabica Electropharmacogram Hippocampus Slice
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Effects of deficit irrigation on soil microorganisms and growth of Arabica coffee(Coffea arabica L.)under different shading cultivation modes 被引量:1
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作者 Xiaogang Liu Rongmei Li +2 位作者 Zhihui Han Qiliang Yang Zeyin Jiang 《International Journal of Agricultural and Biological Engineering》 SCIE EI CAS 2021年第6期99-108,共10页
In the present research,the rational coupling mode of irrigation and shading cultivation for rapid growth and water saving of young Arabica coffee shrubs was investigated from 2016 to 2017.Taking full irrigation(FI,1.... In the present research,the rational coupling mode of irrigation and shading cultivation for rapid growth and water saving of young Arabica coffee shrubs was investigated from 2016 to 2017.Taking full irrigation(FI,1.2Ep)as the control,the effects of three deficit irrigation(DI)(DI1,DI2 and DI3,with 1.0Ep,0.8Ep and 0.6Ep)on soil water content,temperature,microorganism population density,photosynthetic characteristics,canopy structure and dry mass of Arabica coffee under three shading cultivation modes(S0,monoculture coffee;S1,mild shading cultivation,intercropping with one line of Arabica coffee and one line of castor(Ricinus communis L.);S2,severe shading cultivation,intercropping with one line of Arabica coffee and two lines of castor)were investigated using plot experiments.Compared to FI,DI1 not obviously changed the population density of soil bacteria and actinomycetes,but increased net photosynthetic rate(Pn),crown area and dry mass of Arabica coffee by 7.0%,9.53%and 10.46%,respectively.In addition,DI1 also decreased total radiation under canopy(TRUC)by 5.51%.DI2 and DI3 reduced the population density of soil bacteria,fungi and actinomycetes ranging 8.94%-47.06%.Compared to S0,S1 increased the population density of soil fungi,bacteria and actinomycetes by 13.99%,30.77%and 9.72%,respectively.S1 also increased Pn,transpiration rate(Tr),leaf apparent radiation use efficiency(ARUE),leaf area index(LAI)and dry mass by 9.29%,5.39%,60.98%,10.31%and 30.02%,respectively.DI1S1 obtained the highest Pn and dry mass and higher LAI and the lowest TRUC.DI1S1 increased Pn,ARUE and dry mass by 18.98%,72.37%and 62.90%respectively but decreased TRUC by 21.77%when compared to FIS0.Thus,DI1S1 was found to be the rational mode of irrigation and shading cultivation for young Arabica coffee. 展开更多
关键词 arabica coffee shading cultivation Ricinus communis l. irrigation quantity soil microorganism canopy structure light-water regulation
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Modeling Leaf Area Estimation for Arabica Coffee (<i>Coffea Arabica</i>L.) Grown at Different Altitudes of Mana District, Jimma Zone
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作者 Zerihun Misgana Gerba Daba Adugna Debela 《American Journal of Plant Sciences》 2018年第6期1292-1307,共16页
This study was aimed at establishing allometric models for estimating LA (Leaf Area) of eight Coffea arabica genotypes in Mana district of Jimma Zone Oromia Regional State, South Western Ethiopia (7&deg;46'N, ... This study was aimed at establishing allometric models for estimating LA (Leaf Area) of eight Coffea arabica genotypes in Mana district of Jimma Zone Oromia Regional State, South Western Ethiopia (7&deg;46'N, 36&deg;0'E). Many Methodologies and instruments have been devised to facilitate measurement of leaf area. However, these methods are destructive, laborious and expensive. For modeling leaf area, leaf width, leaf length and leaf area of 1200 leaves (50 leaves for each genotype) was measured for model calibration and the respective measurements on 960 leaves were used for model validation. Linear measurement was taken from leaves and branch diameters of eight genotypes of C. arabica, cultivated in field following a randomized complete blocks design at three altitudes (High, Medium and Low) were evaluated to identify best option for input in the models, and to validate the method to estimate the leaf area. Linear and non-linear models were tested for their accuracy to predict leaf area of the eight C. arabica genotypes. The use of linear model resulted in high accuracy for all of the eight C. arabica genotypes. No significant effect of growing altitude and genotype was obtained among the slopes of the models. Therefore, one single model was fitted to the combined data of all genotypes at all altitudes (LA = 0.6434LW). Comparison between observed and predicted leaf area was made using this model in another independent dataset, conducted for model validation, exhibited a high degree of correlation (r = 0.98 - 0.99, P < 0. 01). The over or under estimation of the leaf area using this model ranges between 0.02% to 1.7% and this model is adequate to estimate the leaf area for the eight C. arabica genotypes. Hence, this model can be proposed to be reliably used and with this developed model, researchers can estimate the leaf area of newly released eight genotypes of C. arabica at different altitudes accurately. 展开更多
关键词 coffea arabica l. MODElING leaf Area ESTIMATION
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Modeling of Molecular Distillation Parameters: Case Study of Green Coffee Oil (Coffea arabica)
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作者 Melvin A. Duran Rmcon Rubens Maciel Filho Maria R. W. Maciel 《Journal of Chemistry and Chemical Engineering》 2011年第8期706-710,共5页
In principle, the free fatty acids, diterpene fatty acid esters and triglycerides from green coffee oil can be separated effectively, by a suitable separation process, due to the differences between molar mass and vap... In principle, the free fatty acids, diterpene fatty acid esters and triglycerides from green coffee oil can be separated effectively, by a suitable separation process, due to the differences between molar mass and vapor pressures. In addition, in the case of component separation by molecular distillation, boiling point is replaced by evaporation rate at a given temperature. Several experiments and theoretical analyses have been carried out to identify the impact of important parameters (mean free path, evaporation rate, relative volatility and Knudsen number), which determine the performance of these processes and degree of separation. In this work, a process development based on molecular distillation, for the enrichment of coffee diterpenes from green coffee oil is presented. The distillates were enriched in diterpene fatty acid esters and free fatty acids, while the residues were enriched in high molar mass triglycerides. 展开更多
关键词 Diterpenes fatty acid esters coffea arabica molecular distillation mean free path cafestol palmitate
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Botanical Aspects,Caffeine Content and Antioxidant Activity of Coffea arabica
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作者 Andreia Marques dos Santos Luis Carlos Marques +1 位作者 Carolina Passarelli Goncalves Maria Cristina Marcucci 《American Journal of Plant Sciences》 2019年第6期1013-1021,共9页
Brazil is the largest coffee exporter in the world. In addition, it occupies the second position, among the consuming countries of the drink. To investigate the chemical composition and quality of the coffee drink fro... Brazil is the largest coffee exporter in the world. In addition, it occupies the second position, among the consuming countries of the drink. To investigate the chemical composition and quality of the coffee drink from Coffea arabica species, samples grown in the city of Ourinhos, the third most productive region in the state of Sao Paulo, a study of its properties and characteristics was conducted. The pharmacobotanical characteristics were investigated performed according to usual techniques in these researches through macroscopic and microscopic studies through cross-sections. The oil obtained for analysis was extracted by soxhlet, and the caffeine content was measured for green grains using High Performance Liquid Chromatography (HPLC) using as stationary phase, column C18 and gradient mobile phase formed by 80% water and 20% methanol. The concentration obtained was 44.983 ± 0.86 μg/mL. The antioxidant activity was measured in triplicate through the DPPH test of the in natura coffee oil, and presented antioxidant action of EC50 25.89 ± 1.16 μg/mL. 展开更多
关键词 coffea arabica Botanical Characterization CAFFEINE
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Investigation of Types and Hazard of Weeds in Coffea arabica Orchads in Nujiang River Basin 被引量:6
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作者 胡发广 李荣福 +6 位作者 毕晓菲 龙亚芹 郭容琦 俞艳春 李贵平 王万东 周迎春 《Agricultural Science & Technology》 CAS 2012年第11期2367-2369,共3页
[Objective] Through the investigation of weeds in Coffea arabica orchads in NuJiang River basin, this study aimed to provide scientific guidance for the weed control and improving the ecological and economic benefits ... [Objective] Through the investigation of weeds in Coffea arabica orchads in NuJiang River basin, this study aimed to provide scientific guidance for the weed control and improving the ecological and economic benefits of the plantation of Cof- fea arabica. [Method] The types of weeds and the characteristics of weed occur- rence in Coffea arabica orchads in Nujiang River basin were investigated from July to August in 2012. [Result] The results showed that there were 69 types of weeds belonging to 21 families in Coffea arabica orchads. The predominant harmful types were shown as follows: Commelina nudiflora L. + Leptochloa chinensis, Cyperus ro- tundus L. + Bidens pilosa L. + Eleusine indica, Imperata cylindrical + Ageratum conyzoides L. + Eupatorium odoratum L., Ageratum conyzoides L. + Digitaria san- guinalis (L.) Scop. The preponderant weeds consisted mainly of 10 species, namely, Cyperus rotundus L., Commelina nudiflora L., Leptochloa chinensis, Digitaria san- guinalis (L.) Scop, Imperata cylindrical, Bidens pilosa L., Ageratum conyzoides L, E- upatorium odoratum L., Eleusine indica and Chenopodium serotinum L. [Conclusion] The result from this study is of great significance for the plantation of Coffea arabica in Nujiang River basin, as well as the control of weeds. 展开更多
关键词 INVESTIGATION coffea arabica Types and hazard of weeds Nujiang Riverbasin
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New Dammarane Triterpenoids,Caffruones A–D,from the Cherries of Coffea arabica 被引量:4
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作者 Xia Wang Xing-Rong Peng +2 位作者 Jing Lu Gui-Lin Hu Ming-Hua Qiu 《Natural Products and Bioprospecting》 CAS 2018年第6期413-418,共6页
In present study,four new dammarane-type triterpenoids,namely caffruones A–D(1–4),were isolated from the cherries of Coffea arabica.Their structures were elucidated by extensive spectroscopic analysis including 1D,2... In present study,four new dammarane-type triterpenoids,namely caffruones A–D(1–4),were isolated from the cherries of Coffea arabica.Their structures were elucidated by extensive spectroscopic analysis including 1D,2D NMR(HSQC,HMBC,^(1)H–^(1)H COSY,and ROESY),HRMS and IR spectra.This is the first time that tetracyclic triterpenes have been reported in genus Coffea. 展开更多
关键词 coffea arabica CHERRIES TRITERPENOIDS Structural elucidation
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Genetic Diversity Analysis of Coffee (<i>Coffee arabica</i>L.) Germplasm Accessions Growing in the Southwestern Saudi Arabia Using Quantitative Traits 被引量:5
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作者 Taieb Tounekti Mosbah Mahdhi +1 位作者 Turki Ali Al-Turki Habib Khemira 《Natural Resources》 2017年第5期321-336,共16页
Coffee (Coffea arabica) is an economically important crop cultivated on the terraced slopes and narrow valleys of the mountains in the south-western Saudi Arabia. The objective of the study was to evaluate genetic div... Coffee (Coffea arabica) is an economically important crop cultivated on the terraced slopes and narrow valleys of the mountains in the south-western Saudi Arabia. The objective of the study was to evaluate genetic diversity among nineteen coffee accessions collected from different coffee growing areas based on quantitative morphological and pomological traits. Data of 17 quantitative traits were collected and subjected to various statistical analyses. The analysis of variance showed significant differences (P < 0.05) among the accessions for the majority of quantitative traits measured. A principal component analysis (PCA) and hierarchical cluster analysis (HCA) were used to determine the nature and degree of divergence among accessions. PCA showed that four principal components explained about 85.62% of the total variation. Differentiation of germplasm into different clusters was because of cumulative effects of a number of characters. Cluster and distance analysis of quantitative traits revealed the existence of five different groups. The maximum distance was seen between clusters IV and V (76.4) while the minimum was seen between I and II (16.13). Accessions like KSA6 and KSA8 from Tallen valley and KSA10 and KSA11 from Hada and Shada valleys collection are recommenced for the next breeding work as they are high yielder accessions compared to the others. However, it is suggested to complete the present results by additional assessment of the in situ collection and variety trials. These results are of great interest for future breeding programs for this species. 展开更多
关键词 coffea arabica Cluster ANAlYSIS Genetic Diversity Principal Component ANAlYSIS
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Characterization of New Ent-kaurane Diterpenoids of Yunnan Arabica Coffee Beans 被引量:3
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作者 Rui Chu Luo-Sheng Wan +5 位作者 Xing-Rong Peng Mu-Yuan Yu Zhi-Run Zhang Lin Zhou Zhong-Rong Li Ming-Hua Qiu 《Natural Products and Bioprospecting》 CAS 2016年第4期217-223,共7页
Five new ent-kaurane diterpenoids,named mascaroside Ⅲ–Ⅴ(1–3),and 20-nor-cofaryloside Ⅰ–Ⅱ(4–5),together with seven known diterpenoids,were isolated from methanol extracts of the green coffee beans of Yunnan Ara... Five new ent-kaurane diterpenoids,named mascaroside Ⅲ–Ⅴ(1–3),and 20-nor-cofaryloside Ⅰ–Ⅱ(4–5),together with seven known diterpenoids,were isolated from methanol extracts of the green coffee beans of Yunnan Arabica Coffee.Their chemical structures were elucidated by extensive spectroscopic analyses.Meanwhile,cytotoxicity assay against HL-60,A-549,SMMC-7721,MCF-7 and SW480 cell lines showed that they have not evident inhibition of cytotoxicity. 展开更多
关键词 coffea arabica l. Green coffee beans DITERPENOIDS Structural elucidation
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基于UHPLC-QE-MS代谢组学分析小粒种咖啡豆特征成分 被引量:6
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作者 苗玥 谭超 +1 位作者 彭春秀 龚加顺 《中国食品学报》 EI CAS CSCD 北大核心 2022年第11期355-367,共13页
以云南小粒咖啡生豆和埃塞俄比亚咖啡生豆为研究对象,采用超高效液相色谱串联质谱(UHPLC-QE-MS)对咖啡生豆代谢产物进行代谢组学分析,探究云南不同地区咖啡生豆代谢产物差异,以及与埃塞俄比亚咖啡生豆相比的特征成分。试验结果表明:云... 以云南小粒咖啡生豆和埃塞俄比亚咖啡生豆为研究对象,采用超高效液相色谱串联质谱(UHPLC-QE-MS)对咖啡生豆代谢产物进行代谢组学分析,探究云南不同地区咖啡生豆代谢产物差异,以及与埃塞俄比亚咖啡生豆相比的特征成分。试验结果表明:云南小粒咖啡生豆与埃塞俄比亚生豆有36种差异物质,包括表儿茶素、3-O-咖啡酰-1-O-甲基奎宁酸等16种多酚,十八碳三烯酸等8种脂质类,牡荆甙等6种糖类以及少量生物碱类、有机酸类、萜类,其中Mammeigin、牡荆甙、3-O-咖啡酰-1-O-甲基奎宁酸、2,2-二甲基丁二酸、十八碳三烯酸等24种化合物含量高于埃塞俄比亚生豆,表儿茶素、决明子苷、脂氧素等12种化合物含量显著低于埃塞俄比亚生豆。不同地区云南小粒咖啡生豆的代谢组学分析结果显示:差异代谢物共有44种,包括谷氨酸、苯丙氨酸等14种氨基酸,棕榈酰胺、花生酸等11种脂质类,绿原酸、奎宁酸等10种多酚,苹果酸等3种有机酸以及少量萜类、糖类、醇类和其它类。以上结论:利用UHPLC-QE-MS技术并结合多元统计分析的方法,可分析不同区域条件下咖啡生豆代谢产物差异,为咖啡豆产地溯源提供方法依据。 展开更多
关键词 小粒咖啡 超高效液相色谱串联质谱 多元分析 代谢通路
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HPLC同时测定云南卡蒂姆咖啡中7种有机酸含量的方法 被引量:9
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作者 段丽娜 邱碧丽 +3 位作者 代丽玲 张绍龙 梅丽宝 康文虹 《热带农业科学》 2018年第12期100-104,共5页
建立云南卡蒂姆咖啡中L-苹果酸、 DL-酒石酸、柠檬酸、乳酸、单宁酸、富马酸、琥珀酸含量的测定方法。采用HPLC同时测定云南卡蒂姆咖啡中7种有机酸的含量,以C18为色谱柱,流动相为甲醇-0.1%磷酸水,梯度洗脱,流速0.8 mL/min,柱温:35℃,检... 建立云南卡蒂姆咖啡中L-苹果酸、 DL-酒石酸、柠檬酸、乳酸、单宁酸、富马酸、琥珀酸含量的测定方法。采用HPLC同时测定云南卡蒂姆咖啡中7种有机酸的含量,以C18为色谱柱,流动相为甲醇-0.1%磷酸水,梯度洗脱,流速0.8 mL/min,柱温:35℃,检测波长:210 nm。7种有机酸成分分离度良好;各成分质量浓度与峰面积在测定范围内均呈良好的线性关系(r>0.999 5),平均加标回收率在86.31%~95.23%, 7种有机酸的精密度及重复性的RSD值均<3.0%。该方法简便、准确、重复性好,可用于云南小粒咖啡中L-苹果酸、 DL-酒石酸、柠檬酸、乳酸、单宁酸、富马酸、琥珀酸含量的测定。 展开更多
关键词 HPlC 云南卡蒂姆咖啡 有机酸
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Adjustment of Mathematical Models and the Quality of Drying the Pulped Coffee at Different Air Conditions 被引量:1
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作者 Paulo Carteri Coradi Reni Saath +1 位作者 Carlos Henrique Reinato Flavio Meira Borem 《Journal of Agricultural Science and Technology(B)》 2019年第1期38-48,共11页
The aim of the study was to describe the drying kinetics of washed coffee (Coffea arabica L.) and evaluate the best mathematical model to fit the experimental drying data conducted with different air humidity (40%, 50... The aim of the study was to describe the drying kinetics of washed coffee (Coffea arabica L.) and evaluate the best mathematical model to fit the experimental drying data conducted with different air humidity (40%, 50% and 60%), temperatures (23, 40 and 60 °C) and the quality of the coffee. The cherries coffee were separated and standardized in the processes of washing, mechanical and manual separation. Then, approx. 85 kg of coffee cherries were pulped and taken directly to the yard. The washed coffee was completed dried in a mechanical dryer and yard. The results showed that the different conditions of the ambient air significantly influenced the processes of drying. The water content of the hygroscopic equilibrium of pulped coffee is directly proportional to the water activity and relative humidity (RH), decreasing with increasing temperature, for the same value of equilibrium. The Oswin model was best represented by the hygroscopicity of the pulped coffee, while the Midilli model shows the best fit to describe the drying curves of the washed coffee. The effective diffusion coefficient increases with increasing temperature of the drying air and reducing of RH, being described by the Arrhenius equation. Electrical conductivity, potassium leaching, total titratable acidity and grease acidity increase with increasing drying temperature regardless of the type of processing. Reducing sugars, total sugars and the sensorial quality was negatively affected with increasing drying temperature regardless of the type of processing. The drying at 60 °C/40% RH negatively affected the coffee quality. 展开更多
关键词 coffea arabica l. drying MATHEMATICAl modeling pulped coffee.
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Coffee Leaf Rust(Hemileia vastatrix)Disease in Coffee Plants and Perspectives by the Disease Control 被引量:1
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作者 Alexis Salazar-Navarro Victor Ruiz-Valdiviezo +1 位作者 Jose Joya-Dávila Daniel Gonzalez-Mendoza 《Phyton-International Journal of Experimental Botany》 SCIE 2024年第5期923-949,共27页
Coffee Leaf Rust(CLR)is caused by Hemileia vastatrix in Coffea spp.It is one of the most dangerous phytopathogens for coffee plantations in terms of coffee productivity and coffee cup quality.In this review,we resume ... Coffee Leaf Rust(CLR)is caused by Hemileia vastatrix in Coffea spp.It is one of the most dangerous phytopathogens for coffee plantations in terms of coffee productivity and coffee cup quality.In this review,we resume the problem of CLR in Mexico and the pathogenesis of H.vastatrix.The review abord plant-pathogen interactions which lead a compatible or incompatible interactions and result in CLR disease or resistance,respectively.The review abord Coffea spp.defense response pathways involved in H.vastatrix pathogenicity.Additionally,current measures to control H.vastatrix proliferation and germination were aborded focused on phytosanitary actions,and biological and chemical control.Finally,new trendlines to reduce the impact of CLR as nanoparticles and nanotechnology were analyzed. 展开更多
关键词 Coffee leaf rust coffea arabica PATHOGENESIS NANOPARTIClES biological control
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基于SLAF-Seq的阿拉比卡咖啡遗传多样性分析 被引量:1
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作者 李学俊 王步天 +7 位作者 赵猛 施学东 陈治华 谢纯 卢云峰 董相书 马银波 葛宇 《南方农业学报》 CAS CSCD 北大核心 2024年第6期1583-1593,共11页
【目的】采用特异性位点扩增片段测序(SLAF-Seq)技术对阿拉比卡咖啡种质资源进行遗传多样性分析,明确本地咖啡种质遗传背景,为阿拉比卡咖啡新品种选育提供理论依据。【方法】以国内外40份阿拉比卡咖啡和4份非阿拉比卡咖啡(外类群对照)... 【目的】采用特异性位点扩增片段测序(SLAF-Seq)技术对阿拉比卡咖啡种质资源进行遗传多样性分析,明确本地咖啡种质遗传背景,为阿拉比卡咖啡新品种选育提供理论依据。【方法】以国内外40份阿拉比卡咖啡和4份非阿拉比卡咖啡(外类群对照)种质资源为材料,采用SLAF-Seq技术对其进行SNP标记开发及系统发育、群体遗传结构及主成分分析。【结果】所有供试咖啡属种质资源测序共获得220.54 Mb数据,测序样品平均Reads数量为5012189条,测序平均Q30为95.90%,平均GC含量为39.48%。定位到参考基因组的Clean reads占所有Clean reads总数的百分比平均为95.05%。从44份咖啡属种质资源中共检测到214254个SLAF标签,平均每份样品SLAF标签数量为140742。SLAF标签在每份样本中的分布数量为46234~171026个。共开发出1186433个群体SNP分子标记,每个样品的SNP分子标记数目为381105~903823个,SNP分子标记完整度为32.12%~76.18%,杂合率为6.23%~17.49%。阿拉比卡咖啡SNP分布具有一定的区域集中性,主要集中在1c~11c这套来自其中一个亲本卡尼弗拉咖啡(中粒种)染色体组上。系统发育、群体遗传结构及主成分3种聚类结果显示,阿拉比卡咖啡铁皮卡型、阿拉比卡咖啡波邦型和含有Catimor的类群被明显区分开来独立成群,并明确了18份阿拉比卡咖啡种质的遗传背景。【结论】40份阿拉比卡咖啡主要分为铁皮卡型类群、波邦型类群和含有Catimor商品种质的类群。采用SLAF-Seq技术所开发的SNP分子标记可准确分析阿拉比卡咖啡资源遗传多样性。 展开更多
关键词 阿拉比卡咖啡 遗传多样性 SlAF-Seq SNP 系统发育 群体遗传结构 主成分分析
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Cyazypyr^(TM) Selectivity for Three Species of Phytoseiid for Coffee and Other Relevant Agricultural Crops in Brazil 被引量:3
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作者 Paulo Rebelles Reis Melissa Alves Toledo Fábio MAndrade Silva 《Agricultural Sciences》 2014年第4期298-303,共6页
Mites belonging to the family Phytoseiidae are the most important and most widely studied among predatory mites of phytophagous mites. The phytophagous mites Brevipalpus phoenicis (Geijskes, 1939) (Tenuipalpidae) and ... Mites belonging to the family Phytoseiidae are the most important and most widely studied among predatory mites of phytophagous mites. The phytophagous mites Brevipalpus phoenicis (Geijskes, 1939) (Tenuipalpidae) and Oligonychus ilicis (McGregor, 1917) (Tetranychidae) on coffee (Coffea spp.), are frequently found in combination with the predaceous mites Iphiseiodes zuluagai Denmark & Muma, 1972;Euseius alatus DeLeon, 1966 and Amblyseius herbicolus (Chant, 1959) (Acari: Phytoseiidae), among others. The purpose of this research was to study the effects of the product CyazypyrTM (cyantraniliprole 100 OD) on these three species of Phytoseiidae, relevant to coffee, citrus and other agricultural crops in Brazil, following standard laboratory procedures. Mated female mites were exposed to fresh-dried residues on a glass surface, with 8 treatments, 5 mites per glass plate and 6 replicates, in a completely randomized experimental design. Each test lasted eight days, with a daily count of the surviving females and of eggs laid. CyazypyrTM, in all tested doses (75, 100, 125, 150, 175 and 200 g a.i./ha), was selective for the studied species, A. herbicolus, I. zuluagai, and E. alatus. Overall the treatments resulted in low mortality rates and negligible impact on the reproduction. Therefore, based on IOBC standards, CyazypyrTMcan be classified as not harmful (class 1) or slightly harmful (class 2), comparable to the agrochemical TalentoTM (hexythiazox 500 WP-12 g a.i./ha) equivalent to a harmless standard of selectivity in the laboratory. CyazypyrTM is therefore a complement to programs of integrated pest management, to preserve the populations of predatory mites in crops of coffee and citrus, among others, in Brazil. 展开更多
关键词 Agricultural Acarology Cyantraniliprole coffea arabica Citrus sinensis Predaceous Mites
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Inductors of Resistance and Their Role in Photosynthesis and Antioxidant System Activity of Coffee Seedlings
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作者 Luiz Henrique Monteiro Fernandes Helbert Rezende de Oliveira Silveira +2 位作者 Kamila Rezende Dázio de Souza Mário Lúcio Vilela de Resende José Donizeti Alves 《American Journal of Plant Sciences》 2014年第25期3710-3716,共7页
We investigated the effects of formulations based on phosphite products on gas exchange and activity of antioxidant enzymes in coffee plants. Seedlings of the Mundo Novo cultivar were submitted to various treatments c... We investigated the effects of formulations based on phosphite products on gas exchange and activity of antioxidant enzymes in coffee plants. Seedlings of the Mundo Novo cultivar were submitted to various treatments composed of different formulations of with potassium phosphite (ADB 120), manganese phosphite (Reforce Mn), and fungicide (PrioriXtra&reg). For coffee seedlings, the combination of potassium phosphite and citrus by-products, isolated or in a combination with other products elicited the antioxidant system. Besides the high activity of antioxidant enzymes, the photosynthetic rates were higher than other treatments. The better performance of coffee seedlings treated with those formulations occurred even in absence of pathogens. 展开更多
关键词 coffea arabica Superoxide DISMUTASE ASCORBATE PEROXIDASE CATAlASE
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Genetic Divergence among Progenies Resulting from the Crossing of Groups Coffee Timor Hybrid and Dilla & Alghe
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作者 Janine Magalhaes Guedes Juliana Costa Rezende +4 位作者 Joao Marcos Rodrigues Andrade Lara Samuel Pereira Carvalho Antonio Alves Pereira Alex Mendonca de Carvalho 《Journal of Agricultural Science and Technology(B)》 2013年第12期865-872,共8页
This study aimed to agronomically and morphologically characterize, as well as analyze the genetic divergence of Dilla & Alghe x Timor hybrid progenies of the coffee germplasm bank of Minas Gerais in Brazil to improv... This study aimed to agronomically and morphologically characterize, as well as analyze the genetic divergence of Dilla & Alghe x Timor hybrid progenies of the coffee germplasm bank of Minas Gerais in Brazil to improve the breeding and management schemes of the hybrids. Forty-two morpho-agronomic traits were evaluated and the generalized Mahalanobis distance was used to quantify the genetic divergence among progenies. Tocher clustering, unweighted pair-group method using arithmetic averages (UPGMA) method and canonical variation analysis were employed as clustering strategies. The Tocher and UPGMA methods have been separated the progenies into eight and five groups, respectively. Analysis of the relative contribution of each characteristic to genetic dissimilarity highlighted the characteristics of production in liters in 2009, production notes in 2009, and average uniformity of maturation in 2009 as those that contributed most to obtaining genetic divergence. The authors observed that the first three canonical variables accounted for over 99% of the total variance observed in the full set of analyzed characteristics. High variability was observed among the 15 progenies of Dilla & Alghe × Timor hybrid progenies. The progenies MG0589 and MG0592, MG0593 and MG0589, MG0591 and MG0589, MG0589 and MG0588, MG0589 and MG0583 were the most suitable crosses for exploring the genetic variability in Dilla & Alghe × Timor hybrid generated from the germplasm bank of Minas Gerais. Through these crossovers, it is expected to get new coffee cultivars with desirable agronomic characteristics, as resistant to Pseudomonas xyringae pv. garcae and some breeds ofHemileia vastatrix. 展开更多
关键词 coffea arabica multivariate analysis germplasm bank genetic improvement morpho-agronomic traits.
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Damage and Control Suggestions for the Emerging Disease Coffee Root Rot
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作者 Xingfei FU Guiping LI Faguang HU 《Plant Diseases and Pests》 2024年第4期13-16,共4页
[Objectives]The paper was to elucidate the symptoms,morphological characteristics,etiological factors,and current extent of damage associated with coffee root rot disease.[Methods]The symptoms,morphological characteri... [Objectives]The paper was to elucidate the symptoms,morphological characteristics,etiological factors,and current extent of damage associated with coffee root rot disease.[Methods]The symptoms,morphological characteristics,and etiological factors associated with coffee root rot disease were systematically observed,described,and analyzed.The assessment of damage was carried out using a specialized investigative methodology.[Results]The application of bottom fertilizer containing Fusarium incarnatum facilitated the pathogen's entry through root wounds during transplantation,resulting in the development of water-soaked depression lesions in the affected areas.This infection significantly reduced the number of lateral roots in coffee plants,leading to symptoms such as wilting,withering,and ultimately,the death of the aboveground foliage.F.incarnatum exhibited three distinct types of spore morphology:macroconidia,which were sickle-shaped;mesoconidia,which were spindle-shaped;and microconidia,which were oval-shaped.The incidence rate of the disease in the affected region reached 100%,with a disease index exceeding 91,indicating severe damage.[Conclusions]This study serves as a valuable reference for the prevention and management of the emerging disease known as coffee root rot. 展开更多
关键词 coffea arabica Root rot Fusarium incarnatum Prevention and control New diseases
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