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邻苯二甲酸酯对HepG2细胞血红素加氧酶1表达的影响及基于该酶的三维定量构效关系模型的构建
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作者 刘焕 李康兴 +3 位作者 翁文洁 时煜筠 柳春红 农镇艺 《中国药理学与毒理学杂志》 北大核心 2025年第9期681-688,共8页
目的评价邻苯二甲酸酯类(PAEs)化合物对HepG2细胞中血红素加氧酶1(HO-1)表达的影响,并构建基于HO-1的三维定量构效关系(3D-QSAR)模型。方法①HepG2细胞分别与邻苯二甲酸二(2-乙基己基)酯(DEHP)、邻苯二甲酸二正辛酯(DnOP)、邻苯二甲酸... 目的评价邻苯二甲酸酯类(PAEs)化合物对HepG2细胞中血红素加氧酶1(HO-1)表达的影响,并构建基于HO-1的三维定量构效关系(3D-QSAR)模型。方法①HepG2细胞分别与邻苯二甲酸二(2-乙基己基)酯(DEHP)、邻苯二甲酸二正辛酯(DnOP)、邻苯二甲酸二甲酯(DMP)、邻苯二甲酸二乙酯(DEP)、邻苯二甲酸二己酯(DHXP)、邻苯二甲酸二甲氧乙酯(DMEP)、邻苯二甲酸二丁酯(DBP)〔终浓度均分别为0(DMSO,溶剂对照)、0.0625、0.125、0.25、0.5和1 mmol·L^(-1),n=6〕培养48 h,Western印迹法检测细胞中HO-1蛋白表达水平。②基于各组HO-1蛋白水平,采用比较分子相似性指数分析(CoMSIA)法构建3D-QSAR模型。通过杠杆值(leverge)法验证模型的适用域,采用KNIMEEnalos+节点评估模型拟合质量与预测能力,验证模型稳定性,并通过分子对接验证PAEs与HO-1的结合效应。结果①与溶剂对照组相比,浓度为0.0625 mmol·L^(-1)的DMP、DMEP、DEHP、DnOP和DEP分别处理48 h后,细胞中HO-1蛋白表达水平均显著提高,而1 mmol·L^(-1)的DBP、DnOP、DEHP和DHXP则显著抑制HO-1表达。②构建的3D-QSAR模型的非交叉验证系数(R^(2))和交叉验证系数(Q^(2))分别为0.996和0.548。3D-QSAR模型7种PAEs均位于模型的适用域范围内,且通过了外部验证。分子对接结果表明DBP、DnOP、DEHP和DHXP与HO-1具有较强的结合活性。结论HepG2细胞经1 mmol·L^(-1)PAEs培养48 h显著抑制HO-1蛋白表达,构建的3D-QSAR模型为预测新型PAEs对HO-1的毒性作用提供有效工具。 展开更多
关键词 邻苯二甲酸酯 HEPG2细胞 血红素加氧酶1 比较分子相似性指数分析 三维定量构效关系模型 分子对接
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不同电荷场优化咪唑并吡啶类VEGFR-2抑制剂的三维定量构效关系研究 被引量:1
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作者 刘桦 蒲铃铃 +2 位作者 宋海星 曾莉萍 梁桂兆 《化学研究与应用》 CAS CSCD 北大核心 2018年第5期719-727,共9页
运用不同电荷场优化咪唑并吡啶类VEGFR-2抑制剂,挑选出最优电荷场Gasteiger-Marsili,用COMFA和CoMSIA两种方法建立3D-QSAR模型,以分析化合物结构与分子活性之间的关系。COMFA和CoMSIA模型的交叉验证系数分别为q2=0.673和q2=0.612,拟合... 运用不同电荷场优化咪唑并吡啶类VEGFR-2抑制剂,挑选出最优电荷场Gasteiger-Marsili,用COMFA和CoMSIA两种方法建立3D-QSAR模型,以分析化合物结构与分子活性之间的关系。COMFA和CoMSIA模型的交叉验证系数分别为q2=0.673和q2=0.612,拟合验证系数分别为r^2=0.891和r^2=0.973,外部验证复相关系数分别为r2 pred=0.669和r2 pred=0.658,结果表明两种模型都有良好的可信度和预测能力。COMFA和CoMSIA模型在三维等视图上相互对照和验证,得到的结论与分子对接结果一致,确立了分子结构对抑制剂活性影响的具体作用方式,对指导药物的设计与改造,新VEGFR-2抑制剂的合成提供参考。 展开更多
关键词 VEGFR-2抑制剂 电荷场 COMFA comsia 3D-QSAR模型
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Synthesis,biological activities and 3D-QSAR studies of(R)-2-phenyl-4,5-dihydrothiazole-4-carboxamide derivatives containing a sulfur ether moiety 被引量:5
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作者 Jingbo Liu Fengyun Li +5 位作者 Yuanhong Wang Haoxuan Zhang Jingyue Dong Pengwei Sun Yuxin Li Zhengming Li 《Chinese Chemical Letters》 SCIE CAS CSCD 2019年第3期668-671,共4页
A series of(R)-2-phenyl-4,5-dihydrothiazole-4-carboxamide derivatives containing a sulfur ether moiety were synthesized and characterized on the basis of NMR and elemental analysis(EA). The crystal structure of(R)-N-(... A series of(R)-2-phenyl-4,5-dihydrothiazole-4-carboxamide derivatives containing a sulfur ether moiety were synthesized and characterized on the basis of NMR and elemental analysis(EA). The crystal structure of(R)-N-(2-methyl-1-(methylthio)propan-2-yl)-2-(4-nitrophenyl)-4,5-dihydrothiazole-4-carboxamide(13 d) was determined to show R configuration. The bioasssy results indicated that most title compounds displayed good and broad spectrum antifungal activities against several phytopathogenic fungi. The structure activity relationships were discussed. Based on the antifungal activity of title compounds against Phytophthora capsici, a CoMSIA calculation was performed to establish a 3 D-QSAR model, which revealed that electrostatic and hydrophobic fields were the two most significant factors for antifungal activity. According to the established 3D-QSAR model, structure optimization was carried out to find(R)-N-((R)-1-(methylthio)propan-2-yl)-2-(p-tolyl)-4,5-dihydrothiazole-4-carboxamide(15 h)with excellent activity against Phytophthora capsici, thus emerging as a new lead compound for novel antiphytopathogenic fungus agent development. 展开更多
关键词 (R)-2-Phenyl-4 5-dihydrothiazole-4- CARBOXAMIDE SULFUR ETHER Antifungal activity SARs comsia model
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Docking Study and Three-Dimensional Quantitative Structure- Activity Relationship (3D-QSAR) Analyses and Novel Molecular Design of a Series of 4-Aminoquinazolines as Inhibitors of Aurora B Kinase
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作者 Sun, Haopeng Zhu, Jia +4 位作者 Chen, Yadong Sun, Yuan Zhi, Huijing Li, Hao You, Qidong 《Chinese Journal of Chemistry》 SCIE CAS CSCD 2011年第9期1785-1799,共15页
The Aurora proteins are critical regulators of major mitotic events and attractive targets for anticancer therapy. 3D-QSAR studies based on molecular docking were performed on a dataset of 40 4-aminoquinazolines compo... The Aurora proteins are critical regulators of major mitotic events and attractive targets for anticancer therapy. 3D-QSAR studies based on molecular docking were performed on a dataset of 40 4-aminoquinazolines compounds. The CoMSIA model produced significantly better results than CoMFA model, with q2=0.652 and r2=0.991. The contours analysis provides useful information about the structural requirements for 4-aminoquinazolines for inhib- iting Aurora B. Scaffold hopping method was used to generate new structures based on the maximum common sub- structure of the training and test set compounds. The ADMET property, binding affinity and inhibitory activity of the new designed compounds were predicted, respectively. Finally 16 compounds were identified as the novel in- hibitors for Aurora B kinase. 展开更多
关键词 4-aminoquinazolines 3D-QSAR molecular modeling quantum chemistry comsia aurora B inhibitors
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