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Dual-strategy approach for fungicide discovery: Machine learning-based activity prediction and fragment co-occurrence network construction
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作者 Binyan Jin Jialin Cui +4 位作者 Qi He Huan Xu Xinpeng Sun Ziyao Chai Li Zhang 《Advanced Agrochem》 2025年第4期373-381,共9页
The development of fungicides is time-consuming and costly.Introducing a fungicide-likeness assessment strategy at the early screening stage can help reduce development risks and improve the success rate.However,exist... The development of fungicides is time-consuming and costly.Introducing a fungicide-likeness assessment strategy at the early screening stage can help reduce development risks and improve the success rate.However,existing assessment methods are often plagued by low accuracy and poor generalization,while fragment-based design strategies commonly fail to account for synergistic effects between structural units.Therefore,based on a small-scale sample set,this study developed a more efficient global predictive model for fungicidal activity—-named APPf—by integrating multi-scale feature screening methods and machine learning algorithms,which also accounts for synergistic effects among different structural fragments.We utilized three independent external test sets for model validation:External Test Set 1 for general validation,External Test Set 2 for comparison with existing models,and External Test Set 3 for disease-specific fungicide evaluation.On External Test Set 1,the APPf model achieved a precision of 0.6454,a recall of 0.8535,and an F1 score of 0.7350,demonstrating its robust predictive performance.It also exhibited strong enrichment capability for positive samples in External Test Set 2.For External Test Set 3,APPf achieved a prediction accuracy exceeding 80%for each disease,suggesting its promising potential in practical fungicide development.Furthermore,we quantified the contribution of molecular descriptors to the model predictions using SHAP value analysis and identified nHdNH and NssssNp as strong indicative features for predicting fungicidal activity,thereby enhancing the interpretability of the model.APPf has been deployed on a public web server(http://pesticides.cau.edu.cn/APPf),providing a user-friendly online prediction service to support the discovery of novel fungicides.Meanwhile,we employed a molecular fragmentation strategy to analyze the co-occurrence relationships between fragments in fungicides and constructed a network map of fragment co-occurrence associated with fungicidal activity.This study provides both an active fragment library and a global fungicide-likeness assessment tool for AI-based de novo molecular generation aimed at discovering novel fungicidal leads,which is expected to enhance the efficiency of developing new fungicides. 展开更多
关键词 Machine learning Activity prediction Fragment co-occurrence Interpretability Online website
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Birds'co-occurrence is mediated by diet,habitat type,and anthropogenic disturbances in Ghana's Central Region
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作者 Collins Ayine Nsor Michael Perry-Amissah +4 位作者 John Nkrumah Mensah Samuel Boadi Micheal Asigbase Louis Addae-Wireko Rockson Acolats 《Avian Research》 2025年第3期412-422,共11页
Understanding the fundamental drivers of large-scale species co-occurrence is a critical issue in ecology and conservation research. Here, we assessed foraging guilds, habitat type and disturbances as drivers of bird ... Understanding the fundamental drivers of large-scale species co-occurrence is a critical issue in ecology and conservation research. Here, we assessed foraging guilds, habitat type and disturbances as drivers of bird species co-occurrence in Ghana's Central Region over six months. Birds were sampled in 120 points across six different habitat types (farmland, forest reserve, urban area, coastal savannah, wetland, and mangrove), using the point-centred count technique. In total, 4060 individuals belonging to 216 species were recorded across all six habitat types. We found that co-occurring species were more similar in their foraging behaviour and habitat association. About 60% of the birds were found to co-occur randomly, 15% co-occurred negatively, and 25% co-occurred positively. Carnivores like the Black Heron (Egretta ardesiaca) and Spur-winged Lapwing (Vanellus spinosus) randomly co-occurred with other guild groups and were dominant in the mangroves and wetlands. Frugivores from forest reserves had only a 25% chance of randomly co-occurring with other birds and about a 60% chance of positively co-occurring with other birds. Our findings suggest that foraging guilds and habitat type are major factors driving bird co-occurrence and community assemblages in this West African suburban region. 展开更多
关键词 Community assembly Competition Foraging guilds Habitat.preference NMDS Species co-occurrence
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Discussion on the Dilemmas and Optimization Strategies of Rural Economic Development under the Rural Revitalization Strategy
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作者 Qixiao Sun 《Proceedings of Business and Economic Studies》 2025年第4期59-64,共6页
This article focuses on the challenges of rural economic development under the strategy of rural revitalization,and deeply analyzes the current situation of rural economic development.Research has found that although ... This article focuses on the challenges of rural economic development under the strategy of rural revitalization,and deeply analyzes the current situation of rural economic development.Research has found that although the rural revitalization strategy has achieved significant results in improving residents’quality of life,promoting agricultural modernization,it still faces challenges such as severe loss of human resources,insufficient agricultural technological innovation,and backward infrastructure construction.In response to these challenges,this paper proposes optimization strategies from three aspects:strengthening rural education and talent team construction,promoting agricultural technology innovation and achievement transformation,and increasing investment in rural infrastructure construction. 展开更多
关键词 Dilemmas and optimization strategies Rural economic development Rural revitalization strategy
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Microglial intervention in ischemic stroke:Roles and intervention strategies 被引量:3
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作者 Cuiling Ji Lixinbei Sheng +4 位作者 Kaijun Han Ping Yuan Wei Li Lu Chen Yongyue Gao 《Neural Regeneration Research》 2026年第2期443-454,共12页
Ischemic stroke is a major cause of neurological deficits and high disability rate.As the primary immune cells of the central nervous system,microglia play dual roles in neuroinflammation and tissue repair following a... Ischemic stroke is a major cause of neurological deficits and high disability rate.As the primary immune cells of the central nervous system,microglia play dual roles in neuroinflammation and tissue repair following a stroke.Their dynamic activation and polarization states are key factors that influence the disease process and treatment outcomes.This review article investigates the role of microglia in ischemic stroke and explores potential intervention strategies.Microglia exhibit a dynamic functional state,transitioning between pro-inflammatory(M1)and anti-inflammatory(M2)phenotypes.This duality is crucial in ischemic stroke,as it maintains a balance between neuroinflammation and tissue repair.Activated microglia contribute to neuroinflammation through cytokine release and disruption of the blood-brain barrier,while simultaneously promoting tissue repair through anti-inflammatory responses and regeneration.Key pathways influencing microglial activation include Toll-like receptor 4/nuclear factor kappa B,mitogen-activated protein kinases,Janus kinase/signal transducer and activator of transcription,and phosphoinositide 3-kinase/protein kinase B/mammalian target of rapamycin pathways.These pathways are targets for various experimental therapies aimed at promoting M2 polarization and mitigating damage.Potential therapeutic agents include natural compounds found in drugs such as minocycline,as well as traditional Chinese medicines.Drugs that target these regulatory mechanisms,such as small molecule inhibitors and components of traditional Chinese medicines,along with emerging technologies such as single-cell RNA sequencing and spatial transcriptomics,offer new therapeutic strategies and clinical translational potential for ischemic stroke. 展开更多
关键词 blood-brain barrier ischemic stroke MICROGLIA nerve regeneration NEUROINFLAMMATION NEUROPROTECTION oxidative stress polarization signaling pathways therapeutic strategies
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Managing Brand Image in the Digital Era: A Strategic Analysis of Dove’s Advertising Controversy and Recovery Strategy
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作者 Suwen Xuan 《Proceedings of Business and Economic Studies》 2025年第5期155-161,共7页
Dove’s 2017 advertising incident,which sparked widespread debate regarding perceived cultural insensitivity,highlighted a disconnect between the brand’s“Real Beauty”positioning and public reception.In response,thi... Dove’s 2017 advertising incident,which sparked widespread debate regarding perceived cultural insensitivity,highlighted a disconnect between the brand’s“Real Beauty”positioning and public reception.In response,this study proposes a strategic digital recovery framework,including revised campaign content,transparent communication through social media,and data-driven customer segmentation based on diverse skincare needs and cultural backgrounds.A PESTLE analysis underscores the importance of digital transformation and rising social consciousness in brand management.Findings suggest that inclusive messaging,precision targeting,and omnichannel digital engagement are key to restoring brand trust and reputation in the digital landscape. 展开更多
关键词 Brand crisis Digital marketing Omnichannel strategy Precision targeting Customer segmentation Inclusive branding
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Comparison of environmental responding strategies between Ulva prolifera and Sargassum horneri:an in-situ study during the co-occurrence of green tides and golden tides in the Yellow Sea,China in 2017
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作者 Xinyu ZHAO Yi ZHONG +6 位作者 Huanxin ZHANG Tongfei QU Chengzong HOU Chen GUAN Feng LIU Xuexi TANG Ying WANG 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2021年第6期2252-2266,共15页
Large-scale green tides in the Yellow Sea occurred for 13 consecutive years since 2007.The unusual co-occurrence of green tides and golden tides occurred in the Yellow Sea in 2017.The causative species are Ulva prolif... Large-scale green tides in the Yellow Sea occurred for 13 consecutive years since 2007.The unusual co-occurrence of green tides and golden tides occurred in the Yellow Sea in 2017.The causative species are Ulva prolifera and/or Sargassum horneri.Previous studies on physiological response characteristics of U.prolifera and S.horneri are done in the laboratory mainly,and there is no in-situ comparative study in this regard.In this study,the in-situ physiological response characteristics of both species were measured.The results indicated that cyclic electron flow and antioxidant system play more important roles in protecting U.prolifera,while non-photochemical quenching is more important for adapting to the environment in S.horneri.U.prolifera has a stronger ability to utilize nutrients to rapidly increase its biomass under a suitable condition compared to S.horneri. 展开更多
关键词 Ulva prolifera Sargassum horneri environmental response strategy in-situ study
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Drug-delivery strategies using biomaterials in the field of nerve regeneration
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作者 Linbin Xu Chao Zhou +1 位作者 Xu Wang Cunyi Fan 《Neural Regeneration Research》 2026年第5期1738-1763,共26页
Neural injuries can cause considerable functional impairments,and both central and peripheral nervous systems have limited regenerative capacity.The existing conventional pharmacological treatments in clinical practic... Neural injuries can cause considerable functional impairments,and both central and peripheral nervous systems have limited regenerative capacity.The existing conventional pharmacological treatments in clinical practice show poor targeting,rapid drug clearance from the circulatory system,and low therapeutic efficiency.Therefore,in this review,we have first described the mechanisms underlying nerve regeneration,characterized the biomaterials used for drug delivery to facilitate nerve regeneration,and highlighted the functionalization strategies used for such drug-delivery systems.These systems mainly use natural and synthetic polymers,inorganic materials,and hybrid systems with advanced drug-delivery abilities,including nanoparticles,hydrogels,and scaffoldbased systems.Then,we focused on comparing the types of drug-delivery systems for neural regeneration as well as the mechanisms and challenges associated with targeted delivery of drugs to facilitate neural regeneration.Finally,we have summarized the clinical application research and limitations of targeted delivery of these drugs.These biomaterials and drug-delivery systems can provide mechanical support,sustained release of bioactive molecules,and enhanced intercellular contact,ultimately reducing cell apoptosis and enhancing functional recovery.Nevertheless,immune reactions,degradation regulation,and clinical translations remain major unresolved challenges.Future studies should focus on optimizing biomaterial properties,refining delivery precision,and overcoming translational barriers to advance these technologies toward clinical applications. 展开更多
关键词 BIOMATERIALS clinical trial drug drug-delivery strategy drug-loading strategy drug-release strategy nerve regeneration peripheral nerve RNA tissue engineering
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Recent Advances in Regulation Strategy and Catalytic Mechanism of Bi-Based Catalysts for CO_(2) Reduction Reaction
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作者 Jianglong Liu Yunpeng Liu +5 位作者 Shunzheng Zhao Baotong Chen Guang Mo Zhongjun Chen Yuechang Wei Zhonghua Wu 《Nano-Micro Letters》 2026年第1期647-697,共51页
Using photoelectrocatalytic CO_(2) reduction reaction(CO_(2)RR)to produce valuable fuels is a fascinating way to alleviate environmental issues and energy crises.Bismuth-based(Bi-based)catalysts have attracted widespr... Using photoelectrocatalytic CO_(2) reduction reaction(CO_(2)RR)to produce valuable fuels is a fascinating way to alleviate environmental issues and energy crises.Bismuth-based(Bi-based)catalysts have attracted widespread attention for CO_(2)RR due to their high catalytic activity,selectivity,excellent stability,and low cost.However,they still need to be further improved to meet the needs of industrial applications.This review article comprehensively summarizes the recent advances in regulation strategies of Bi-based catalysts and can be divided into six categories:(1)defect engineering,(2)atomic doping engineering,(3)organic framework engineering,(4)inorganic heterojunction engineering,(5)crystal face engineering,and(6)alloying and polarization engineering.Meanwhile,the corresponding catalytic mechanisms of each regulation strategy will also be discussed in detail,aiming to enable researchers to understand the structure-property relationship of the improved Bibased catalysts fundamentally.Finally,the challenges and future opportunities of the Bi-based catalysts in the photoelectrocatalytic CO_(2)RR application field will also be featured from the perspectives of the(1)combination or synergy of multiple regulatory strategies,(2)revealing formation mechanism and realizing controllable synthesis,and(3)in situ multiscale investigation of activation pathways and uncovering the catalytic mechanisms.On the one hand,through the comparative analysis and mechanism explanation of the six major regulatory strategies,a multidimensional knowledge framework of the structure-activity relationship of Bi-based catalysts can be constructed for researchers,which not only deepens the atomic-level understanding of catalytic active sites,charge transport paths,and the adsorption behavior of intermediate products,but also provides theoretical guiding principles for the controllable design of new catalysts;on the other hand,the promising collaborative regulation strategies,controllable synthetic paths,and the in situ multiscale characterization techniques presented in this work provides a paradigm reference for shortening the research and development cycle of high-performance catalysts,conducive to facilitating the transition of photoelectrocatalytic CO_(2)RR technology from the laboratory routes to industrial application. 展开更多
关键词 Bismuth-based catalysts CO_(2)reduction reaction Regulation strategy Catalytic mechanism REVIEW
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基于co-occurrence相似度的聚类集成方法 被引量:3
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作者 凌光 王明春 冯嘉毅 《计算机应用》 CSCD 北大核心 2011年第2期441-445,461,共6页
首先提出了一种基于属性值的co-occurrence相似度概念,通过对其进一步的研究,提出了3个等价性表述;然后对属性值之间的co-occurrence相似度进行引申,给出了数据对象之间co-occurrence相似度的定义,并将其成功应用到聚类集成方法中。利用... 首先提出了一种基于属性值的co-occurrence相似度概念,通过对其进一步的研究,提出了3个等价性表述;然后对属性值之间的co-occurrence相似度进行引申,给出了数据对象之间co-occurrence相似度的定义,并将其成功应用到聚类集成方法中。利用co-occurrence相似度在计算某个初始聚类结果中数据对象之间的相似度时,充分考虑了其他初始聚类结果和该初始聚类结果之间的相互影响和联系。实验表明,基于co-occurrence相似度的聚类集成(CSCE)方法能有效识别数据之间的细微结构,有助于提高聚类集成的效果。 展开更多
关键词 聚类集成 binary相似度 co-occurrence相似度 基于簇相似的划分算法 基于co-occurrence相似度的聚类集成
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基于加权co-occurrence矩阵的聚类集成算法
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作者 柏建普 杨亚坤 《电子科技》 2012年第2期19-22,共4页
聚类集成是数据挖掘研究的一个热点。它是利用同一数据集的多个聚类划分集成在一起,以提高聚类分析的性能。当前相关研究大多没有考虑进行集成的聚类成员的质量,因此较差的成员会对集成结果产生不良影响。文中提出了一种基于加权co-occu... 聚类集成是数据挖掘研究的一个热点。它是利用同一数据集的多个聚类划分集成在一起,以提高聚类分析的性能。当前相关研究大多没有考虑进行集成的聚类成员的质量,因此较差的成员会对集成结果产生不良影响。文中提出了一种基于加权co-occurrence矩阵的聚类集成算法(WCSCE)。该方法首先计算出聚类成员基于属性值的co-occurrence矩阵,然后对聚类成员的质量进行简单评价并赋予权重,生成加权co-occurrence矩阵,进而产生集成结果。最后通过实验验证了该算法的有效性,并提高了聚类质量。 展开更多
关键词 聚类集成 co-occurrence矩阵 权重
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Co-occurrence Patterns of Above-ground and Below-ground Mite Communities in Farmland of Sanjiang Plain, Northeast China 被引量:7
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作者 LIN Lin GAO Meixiang +3 位作者 LIU Dong ZHANG Xueping WU Haitao WU Donghui 《Chinese Geographical Science》 SCIE CSCD 2014年第3期339-347,共9页
One of the fundamental questions in community ecology is whether communities are random or formed by deterministic mechanisms. Although many efforts have been made to verify non-randomness in community structure, litt... One of the fundamental questions in community ecology is whether communities are random or formed by deterministic mechanisms. Although many efforts have been made to verify non-randomness in community structure, little is known with regard to co-occurrence patterns in above-ground and below-ground communities. In this paper, we used a null model to test non-randomness in the structure of the above-ground and below-ground mite communities in farmland of the Sanjiang Plain, Northeast China. Then, we used four tests for non-randomness to recognize species pairs that would be demonstrated as significantly aggregated or segregated co-occurrences of the above-ground and below-ground mite communities. The pattern of the above-ground mite commu- nity was significantly non-random in October, suggesting species segregation and hence interspecific competition. Additionally, species co-occurrence patterns did not differ from randomness in the above-ground mite community in August or in below-ground mite com- munities in August and October. Only one significant species pair was detected in the above-ground mite community in August, while no significant species pairs were recognized in the above-ground mite community in October or in the below-ground mite communities in August and October. The results indicate that non-randomness and significant species pairs may not be the general rule in the above-ground and below-ground mite communities in farmland of the Sanjiang Plain at the fine scale. 展开更多
关键词 above-ground mite below-ground mite mite communities co-occurrence patterns interspecific competition species pairassociations
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Artificial intelligence on diabetic retinopathy diagnosis: an automatic classification method based on grey level co-occurrence matrix and naive Bayesian model 被引量:6
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作者 Kai Cao Jie Xu Wei-Qi Zhao 《International Journal of Ophthalmology(English edition)》 SCIE CAS 2019年第7期1158-1162,共5页
AIM: To develop an automatic tool on screening diabetic retinopathy(DR) from diabetic patients.METHODS: We extracted textures from eye fundus images of each diabetes subject using grey level co-occurrence matrix metho... AIM: To develop an automatic tool on screening diabetic retinopathy(DR) from diabetic patients.METHODS: We extracted textures from eye fundus images of each diabetes subject using grey level co-occurrence matrix method and trained a Bayesian model based on these textures. The receiver operating characteristic(ROC) curve was used to estimate the sensitivity and specificity of the Bayesian model.RESULTS: A total of 1000 eyes fundus images from diabetic patients in which 298 eyes were diagnosed as DR by two ophthalmologists. The Bayesian model was trained using four extracted textures including contrast, entropy, angular second moment and correlation using a training dataset. The Bayesian model achieved a sensitivity of 0.949 and a specificity of 0.928 in the validation dataset. The area under the ROC curve was 0.938, and the 10-fold cross validation method showed that the average accuracy rate is 93.5%.CONCLUSION: Textures extracted by grey level cooccurrence can be useful information for DR diagnosis, and a trained Bayesian model based on these textures can be an effective tool for DR screening among diabetic patients. 展开更多
关键词 GREY level co-occurrence matrix Bayesian textures artificial INTELLIGENCE receiver operating characteristiccurve DIABETIC RETINOPATHY
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Inversion tillage with straw incorporation affects the patterns of soil microbial co-occurrence and multi-nutrient cycling in a Hapli-Udic Cambisol 被引量:3
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作者 CHEN Xu HAN Xiao-zeng +4 位作者 WANG Xiao-hui GUO Zhen-xi YAN Jun LU Xin-chun ZOU Wen-xiu 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第5期1546-1559,共14页
Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be th... Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process,but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage(CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage(SCT, tillage to a depth of 15 cm),inversion tillage(IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage(SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil.In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol. 展开更多
关键词 SOIL microbiome microbial co-occurrence networks STRAW amendment SOIL nutrient
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Combined effects of habitat and interspec ificinteraction define co-occurrence patterns of sympatric Galliformes 被引量:7
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作者 Lijun Chen Zufei Shu +3 位作者 Wutao Yao Yong Ma Wenhong Xiao Xiaoqun Huang 《Avian Research》 CSCD 2019年第3期344-356,共13页
Background:Disentangling the relative importance of environmental variables and interspecific interaction in modulating co-occurrence patterns of sympatric species is essential for understanding the mechanisms of comm... Background:Disentangling the relative importance of environmental variables and interspecific interaction in modulating co-occurrence patterns of sympatric species is essential for understanding the mechanisms of community assembly and biodiversity. For the two sympatric Galliformes, Silver Pheasants (Lophura nycthemera) and Whitenecklaced Partridges (Arborophila gingica), we know little about the role of habitat use and interspecific interactions in modulating their coexistence. Methods:We adopted a probabilistic approach incorporating habitat preference and interspecific interaction using occupancy model to account for imperfect detection,and used daily activity pattern analysis to investigate the cooccurrence pattern of these two sympatric Galliformes in wet and dry seasons. Results: We found that the detection probability of Silver Pheasant and White-necklaced Partridge were related to habitat variables and interspecific interaction. The presence of Silver Pheasant increases the detection probability of White-necklaced Partridge in both the wet and dry season. However, the presence of White-necklaced Partridges increases the detection probability of Silver Pheasants in the wet season, but decreases the probability in the dry season. Further, Silver Pheasants were detected frequently in the sites of high values of enhanced vegetable index (EVI) in both the wet and dry season, and in sites away from human residential settlement in the wet season. Whitenecklaced partridges were mainly detected in low EVI sites. The site use probabilities of two Galliformes were best explained by habitat variables, Silver Pheasants and White-necklaced Partridges preferred steeper areas during the wet and dry season. Both species mainly occurred in low EVI areas during the wet season and occupied sites away from the resident settlement during the dry season. Moreover, the site use probabilities of two species had opposite relationships with forest canopy coverage. Silver Pheasants preferred areas with high forest canopy coverage whereas White-necklaced Partridges preferred low forest canopy coverage in the dry season, and vice versa in the wet season. Species interaction factor (SIF)corroborated weak evidence of the dependence of the site use of one species on that of the other in the either dry or wet season.Temporally, high overlapping of daily activity pattern indicated no significantly temporal niche differentiation between sympatric Galliformes in both wet and dry seasons. Conclusions:Our results demonstrated that the presence of two species influenced the detection probability interactively and there was no temporal partitioning in activity time between Silver Pheasants and White-necklaced Partridges in the wet and dry seasons.The site use probability of two Galliformes was best explained by habitat variables, especially the forest canopy coverage.Therefore, environmental variables and interspecific interaction are the leading drivers regulating the detection and site use probability and promoting co-occurrence of Silver Pheasants and White-necklaced Partridges. 展开更多
关键词 Arborophila gingica co-occurrence HABITAT preference INTERSPECIFIC interaction Lophura nycthemera OCCUPANCY model
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Co-occurrence of genes for antibiotic resistance and arsenic biotransformation in paddy soils 被引量:3
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作者 Huiling Cui Dong Zhu +4 位作者 Longjun Ding YifeiWang Jianqiang Su Guilan Duan Yongguan Zhu 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2023年第3期701-711,共11页
Paddy soils are potential hotspots of combined contamination with arsenic(As) and antibiotics, which may induce co-selection of antibiotic resistance genes(ARGs) and As biotransformation genes (ABGs), resulting in dis... Paddy soils are potential hotspots of combined contamination with arsenic(As) and antibiotics, which may induce co-selection of antibiotic resistance genes(ARGs) and As biotransformation genes (ABGs), resulting in dissemination of antimicrobial resistance and modification in As biogeochemical cycling. So far, little information is available for these coselection processes and specific patterns between ABGs and ARGs in paddy soils. Here, the16S rRNA amplicon sequencing and high-throughput quantitative PCR and network analysis were employed to investigate the dynamic response of ABGs and ARGs to As stress and manure application. The results showed that As stress increased the abundance of ARGs and mobile genetic elements (MGEs), resulting in dissemination risk of antimicrobial resistance. Manure amendment increased the abundance of ABGs, enhanced As mobilization and methylation in paddy soil, posing risk to food safety. The frequency of the co-occurrence between ABGs and ARGs, the host bacteria carrying both ARGs and ABGs were increased by As or manure treatment, and remarkably boosted in soils amended with both As and manure. Multidrug resistance genes were found to have the preference to be co-selected with ABGs, which was one of the dominant co-occurring ARGs in all treatments, and manure amendment increased the frequency of Macrolide-Lincosamide-Streptogramin B resistance(MLSB) to co-occur with ABGs. Bacillus and Clostridium of Firmicutes are the dominant host bacteria carrying both ABGs and ARGs in paddy soils. This study would extend our understanding on the co-selection between genes for antibiotics and metals, also unveil the hidden environmental effects of combined pollution. 展开更多
关键词 ARSENIC Arsenic biotransformation genes Antibiotic resistance genes co-occurrence Host bacteria
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Temporal characteristics of algae-denitrifying bacteria co-occurrence patterns and denitrifier assembly in epiphytic biofilms on submerged macrophytes in Caohai Lake,SW China 被引量:2
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作者 Pinhua XIA Guoqing LI +3 位作者 Xianfei HUANG Lei SHI Xin DU Tao LIN 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2023年第6期2276-2291,共16页
Denitrifying bacteria in epiphytic biofilms play a crucial role in nitrogen cycle in aquatic habitats.However,little is known about the connection between algae and denitrifying bacteria and their assembly processes i... Denitrifying bacteria in epiphytic biofilms play a crucial role in nitrogen cycle in aquatic habitats.However,little is known about the connection between algae and denitrifying bacteria and their assembly processes in epiphytic biofilms.Epiphytic biofilms were collected from submerged macrophytes(Patamogeton lucens and Najas marina L.)in the Caohai Lake,Guizhou,SW China,from July to November 2020 to:(1)investigate the impact of abiotic and biotic variables on denitrifying bacterial communities;(2)investigate the temporal variation of the algae-denitrifying bacteria co-occurrence networks;and(3)determine the contribution of deterministic and stochastic processes to the formation of denitrifying bacterial communities.Abiotic and biotic factors influenced the variation in the denitrifying bacterial community,as shown in the Mantel test.The co-occurrence network analysis unveiled intricate interactions among algae to denitrifying bacteria.Denitrifying bacterial community co-occurrence network complexity(larger average degrees representing stronger network complexity)increased continuously from July to September and decreased in October before increasing in November.The co-occurrence network complexity of the algae and nirS-encoding denitrifying bacteria tended to increase from July to November.The co-occurrence network complexity of the algal and denitrifying bacterial communities was modified by ammonia nitrogen(NH_(4)^(+)-N)and total phosphorus(TP),pH,and water temperature(WT),according to the ordinary least-squares(OLS)model.The modified stochasticity ratio(MST)results reveal that deterministic selection dominated the assembly of denitrifying bacterial communities.The influence of environmental variables to denitrifying bacterial communities,as well as characteristics of algal-bacterial co-occurrence networks and the assembly process of denitrifying bacterial communities,were discovered in epiphytic biofilms in this study.The findings could aid in the appropriate understanding and use of epiphytic biofilms denitrification function,as well as the enhancement of water quality. 展开更多
关键词 denitrifying bacteria epiphytic biofilms co-occurrence networks submerged macrophytes community assembly
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Automatic Identification of Butterfly Species Based on Gray-Level Co-occurrence Matrix Features of Image Block 被引量:4
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作者 XUE Ankang LI Fan XIONG Yin 《Journal of Shanghai Jiaotong university(Science)》 EI 2019年第2期220-225,共6页
In recent years, automatic identification of butterfly species arouses more and more attention in different areas. Because most of their larvae are pests, this research is not only meaningful for the popularization of... In recent years, automatic identification of butterfly species arouses more and more attention in different areas. Because most of their larvae are pests, this research is not only meaningful for the popularization of science but also important to the agricultural production and the environment. Texture as a notable feature is widely used in digital image recognition technology; for describing the texture, an extremely effective method, graylevel co-occurrence matrix(GLCM), has been proposed and used in automatic identification systems. However,according to most of the existing works, GLCM is computed by the whole image, which likely misses some important features in local areas. To solve this problem, this paper presents a new method based on the GLCM features extruded from three image blocks, and a weight-based k-nearest neighbor(KNN) search algorithm used for classifier design. With this method, a butterfly classification system works on ten butterfly species which are hard to identify by shape features. The final identification accuracy is 98%. 展开更多
关键词 automatic identification butterfly species gray-level co-occurrence matrix(GLCM) features of image block
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Assembly and co-occurrence patterns of rare and abundant bacterial sub-communities in rice rhizosphere soil under short-term nitrogen deep placement 被引量:2
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作者 LI Gui-long WU Meng +5 位作者 LI Peng-fa WEI Shi-ping LIU Jia JIANG Chun-yu LIU Ming LI Zhong-pei 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2021年第12期3299-3311,共13页
Nitrogen(N)deep placement has been found to reduce N leaching and increase N use efficiency in paddy fields.However,relatively little is known how bacterial consortia,especially abundant and rare taxa,respond to N dee... Nitrogen(N)deep placement has been found to reduce N leaching and increase N use efficiency in paddy fields.However,relatively little is known how bacterial consortia,especially abundant and rare taxa,respond to N deep placement,which is critical for understanding the biodiversity and function of agricultural ecosystem.In this study,lllumina sequencing and ecological models were conducted to examine the diversity patterns and underlying assembly mechanisms of abundant and rare taxa in rice rhizosphere soil under different N fertilization regimes at four rice growth stages in paddy fields.The results showed that abundant and rare bacteria had distinct distribution patterns in rhizosphere samples.Abundant bacteria showed ubiquitous distribution;while rare taxa exhibited uneven distribution across all samples.Stochastic processes dominated community assembly of both abundant and rare bacteria,with dispersal limitation playing a more vital role in abundant bacteria,and undominated processes playing a more important role in rare bacteria.The N deep placement was associated with a greater influence of dispersal limitation than the broadcast N fertilizer(BN)and no N fertilizer(NN)treatments in abundant and rare taxa of rhizosphere soil;while greater contributions from homogenizing dispersal were observed for BN and NN in rare taxa.Network analysis indicated that abundant taxa with closer relationships were usually more likely to occupy the central position of the network than rare taxa.Nevertheless,most of the keystone species were rare taxa and might have played essential roles in maintaining the network stability.Overall,these findings highlighted that the ecological mechanisms and co-occurrence patterns of abundant and rare bacteria in rhizosphere soil under N deep placement. 展开更多
关键词 rare bacteria community assembly network analysis co-occurrence patterns N deep placement
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Biodegradable dissolved organic carbon shapes bacterial community structures and co-occurrence patterns in large eutrophic Lake Taihu 被引量:3
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作者 Lei Zhou Yongqiang Zhou +2 位作者 Xiangming Tang Yunlin Zhang Erik Jeppesen 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2021年第9期205-217,共13页
Interactions between dissolved organic matter(DOM)and bacteria are central in the biogeochemical cycles of aquatic ecosystems;however,the relative importance of biodegradable dissolved organic carbon(BDOC)compared wit... Interactions between dissolved organic matter(DOM)and bacteria are central in the biogeochemical cycles of aquatic ecosystems;however,the relative importance of biodegradable dissolved organic carbon(BDOC)compared with other environmental variables in structuring the bacterial communities needs further investigation.Here,we investigated bacterial communities,chromophoric DOM(CDOM)characteristics and physico-chemical parameters as well as examined BDOC via bioassay incubations in large eutrophic Lake Taihu,China,to explore the importance of BDOC for shaping bacterial community structures and co-occurrence patterns.We found that the proportion of BDOC(%BDOC)correlated significantly and positively with the DOC concentration and the index of the contribution of recent produced autochthonous CDOM(BIX).%BDOC,further correlated positively with the relative abundance of the tryptophan-like component and negatively with CDOM aromaticity,indicating that autochthonous production of protein-like CDOM was an important source of BDOC.The richness of the bacterial communities correlated negatively with%BDOC,indicating an enhanced number of species in the refractory DOC environments.%BDOC was identified as a significant stronger factor than DOC in shaping bacterial community composition and the co-occurrence network,suggesting that substrate biodegradability is more significant than DOC quantity determining the bacterial communities in a eutrophic lake.Environmental factors explained a larger proportion of the variation in the conditionally rare and abundant subcommunity than for the abundant and the rare bacterial subcommunities.Our findings emphasize the importance of considering bacteria with different abundance patterns and DOC biodegradability when studying the interactions between DOM and bacteria in eutrophic lakes. 展开更多
关键词 Biodegradable dissolved organic carbon Bacterial community co-occurrence networks Chromophoric dissolved organic matter Habitat niche breadth
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