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Exploring the chemical space of ionic liquids for CO_(2)dissolution through generative machine learning models 被引量:1
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作者 Xiuxian Chen Guzhong Chen +4 位作者 Kunchi Xie Jie Cheng Jiahui Chen Zhen Song Zhiwen Qi 《Green Chemical Engineering》 2025年第3期335-343,共9页
For discovering uncharted chemical space of ionic liquids(ILs)for CO_(2)dissolution,a reliable generative framework combining re-balanced variational autoencoder(VAE),artificial neural network(ANN),and particle swarm ... For discovering uncharted chemical space of ionic liquids(ILs)for CO_(2)dissolution,a reliable generative framework combining re-balanced variational autoencoder(VAE),artificial neural network(ANN),and particle swarm optimization(PSO)is developed based on a comprehensive experimental solubility database from literature.The re-balanced VAE transforms the chemical space of ILs into continuous latent space,which is demonstrated by tdistributed stochastic neighbor embedding(t-SNE)visualization and sampled ions of the latent space.ANN is connected with the re-balanced VAE to predict the CO_(2)solubility and the resultant VAE-ANN model achieves a low mean absolute error(MAE)of 0.022 on the test set.Lastly,the PSO algorithm is employed to search the latent space for optimal IL structures with the highest predicted solubility.A total of 5120 ILs are generated and optimized through 10 parallel runs of PSO.Their CO_(2)solubilities are predicted and compared to those of the 3735 ILs combined with the already-known cations and anions in the CO_(2)solubility database under 298.15 K and 100 kPa.The results demonstrate a notably larger distribution of higher CO_(2)solubility in optimized ILs after PSO,which effectively points out the significance and directions for exploring the wide IL chemical space. 展开更多
关键词 Ionic liquids CO_(2)solubility Variational autoencoder Particle swarm optimization chemical space exploration
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Scaffold and SAR studies on c-MET inhibitors using machine learning approaches 被引量:1
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作者 Jing Zhang Mingming Zhang +10 位作者 Weiran Huang Changjie Liang Wei Xu Jinghua Zhang Jun Tu Innocent Okohi Agida Jinke Cheng Dong-Qing Wei Buyong Ma Yanjing Wang Hongsheng Tan 《Journal of Pharmaceutical Analysis》 2025年第6期1321-1333,共13页
Numerous c-mesenchymal-epithelial transition(c-MET)inhibitors have been reported as potential anticancer agents.However,most fail to enter clinical trials owing to poor efficacy or drug resistance.To date,the scaffold... Numerous c-mesenchymal-epithelial transition(c-MET)inhibitors have been reported as potential anticancer agents.However,most fail to enter clinical trials owing to poor efficacy or drug resistance.To date,the scaffold-based chemical space of small-molecule c-MET inhibitors has not been analyzed.In this study,we constructed the largest c-MET dataset,which included 2,278 molecules with different struc-tures,by inhibiting the half maximal inhibitory concentration(IC_(50))of kinase activity.No significant differences in drug-like properties were observed between active molecules(1,228)and inactive mol-ecules(1,050),including chemical space coverage,physicochemical properties,and absorption,distri-bution,metabolism,excretion,and toxicity(ADMET)profiles.The higher chemical diversity of the active molecules was downscaled using t-distributed stochastic neighbor embedding(t-SNE)high-dimensional data.Further clustering and chemical space networks(CSNs)analyses revealed commonly used scaffolds for c-MET inhibitors,such as M5,M7,and M8.Activity cliffs and structural alerts were used to reveal“dead ends”and“safe bets”for c-MET,as well as dominant structural fragments consisting of pyr-idazinones,triazoles,and pyrazines.Finally,the decision tree model precisely indicated the key structural features required to constitute active c-MET inhibitor molecules,including at least three aromatic het-erocycles,five aromatic nitrogen atoms,and eight nitrogeneoxygen atoms.Overall,our analyses revealed potential structure-activity relationship(SAR)patterns for c-MET inhibitors,which can inform the screening of new compounds and guide future optimization efforts. 展开更多
关键词 c-MET inhibitors Machine learning Structure-activity relationship Hierarchical clustering Scaffold based chemical space Active cliff
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Evaluation and Optimization of Electrode Configuration of Multi-Channel Corona Discharge Plasma for Dye-Containing Wastewater Treatment 被引量:4
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作者 任景俞 王铁成 +2 位作者 屈广周 梁东丽 呼世斌 《Plasma Science and Technology》 SCIE EI CAS CSCD 2015年第12期1053-1060,共8页
A discharge plasma reactor with a point-to-plane structure was widely studied experimentally in wastewater treatment.In order to improve the utilization efficiency of active species and the energy efficiency of this k... A discharge plasma reactor with a point-to-plane structure was widely studied experimentally in wastewater treatment.In order to improve the utilization efficiency of active species and the energy efficiency of this kind of discharge plasma reactor during wastewater treatment,the electrode configuration of the point-to-plane corona discharge reactor was studied by evaluating the effects of discharge spacing and adjacent point distance on discharge power and discharge energy density,and then dye-containing wastewater decoloration experiments were conducted on the basis of the optimum electrode configuration.The experimental results of the discharge characteristics showed that high discharge power and discharge energy density were achieved when the ratio of discharge spacing to adjacent point distance(d/s) was 0.5.Reactive Brilliant Blue(RBB) wastewater treatment experiments presented that the highest RBB decoloration efficiency was observed at d/s of 0.5,which was consistent with the result obtained in the discharge characteristics experiments.In addition,the biodegradability of RBB wastewater was enhanced greatly after discharge plasma treatment under the optimum electrode configuration.RBB degradation processes were analyzed by GC-MS and IC,and the possible mechanism for RBB decoloration was also discussed. 展开更多
关键词 wastewater spacing ozone Configuration pollutant AOPs chemically Corona Fenton electrolysis
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Machine learning of organic solvents reveals an extraordinary axis in Hansen space as indicator of spherical precipitation of polymers
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作者 Yuta Ihara Hiroshi Yamagishi +1 位作者 Masanobu Naito Yohei Yamamoto 《Aggregate》 2023年第5期207-213,共7页
Machine learning is an emerging tool in the field of materials chemistry for uncovering a principle from large datasets.Here,we focus on the spherical precipitation behavior of polymers and computationally extract a h... Machine learning is an emerging tool in the field of materials chemistry for uncovering a principle from large datasets.Here,we focus on the spherical precipitation behavior of polymers and computationally extract a hidden trend that is orthogonal to the availability bias in the chemical space.For constructing a dataset,four polymers were precipitated from 416 solvent/nonsolvent combinations,and the morphology of the resulting precipitates were collected.The dataset was subjected to computational investigations consisting of principal component analysis and machine learning based on random forest model and support vector machine.Thereby,we eliminated the effect of the availability bias and found a linear combination of Hansen parameters to be the most suitable variable for predicting precipitation behavior.The predicted appropriate solvents are those with low hydrogen bonding capability,low polarity,and small molecular volume.Furthermore,we found that the capability for spherical precipitation is orthogonal to the availability bias and forms an extraordinary axis in Hansen space,which is the origin of the conventional difficulty in identifying the trend.The extraordinary axis points toward a void region,indicating the potential value of synthesizing novel solvents located therein. 展开更多
关键词 chemical space computational chemistry machine learning POLYMERS PRECIPITATION
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Advancing Material Stability Prediction: Leveraging Machine Learning and High-Dimensional Data for Improved Accuracy 被引量:1
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作者 Aasim Ayaz Wani 《Materials Sciences and Applications》 2025年第2期79-105,共27页
Predicting the material stability is essential for accelerating the discovery of advanced materials in renewable energy, aerospace, and catalysis. Traditional approaches, such as Density Functional Theory (DFT), are a... Predicting the material stability is essential for accelerating the discovery of advanced materials in renewable energy, aerospace, and catalysis. Traditional approaches, such as Density Functional Theory (DFT), are accurate but computationally expensive and unsuitable for high-throughput screening. This study introduces a machine learning (ML) framework trained on high-dimensional data from the Open Quantum Materials Database (OQMD) to predict formation energy, a key stability metric. Among the evaluated models, deep learning outperformed Gradient Boosting Machines and Random Forest, achieving up to 0.88 R2 prediction accuracy. Feature importance analysis identified thermodynamic, electronic, and structural properties as the primary drivers of stability, offering interpretable insights into material behavior. Compared to DFT, the proposed ML framework significantly reduces computational costs, enabling the rapid screening of thousands of compounds. These results highlight ML’s transformative potential in materials discovery, with direct applications in energy storage, semiconductors, and catalysis. 展开更多
关键词 High-Throughput Screening for Material Discovery Machine Learning Data-Driven Structural Stability Analysis AI for chemical space Exploration Interpretable ML Models for Material Stability Thermodynamic Property Prediction Using AI
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Hierarchy-boosted funnel learning for identifying semiconductors with ultralow lattice thermal conductivity
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作者 Mengfan Wu Shenshen Yan Jie Ren 《npj Computational Materials》 2025年第1期1161-1173,共13页
Data-driven machine learning(ML)has demonstrated tremendous potential in material property predictions.However,the scarcity of materials data with costly property labels in the vast chemical space presents a significa... Data-driven machine learning(ML)has demonstrated tremendous potential in material property predictions.However,the scarcity of materials data with costly property labels in the vast chemical space presents a significant challenge for ML in efficiently predicting properties and uncovering structure-property relationships.Here,we propose a novel hierarchy-boosted funnel learning(HiBoFL)framework,which is successfully applied to identify semiconductors with ultralow lattice thermal conductivity(κ_(L)).By training on only a few hundred materials targeted by unsupervised learning from a pool of hundreds of thousands,we achieve efficient and interpretable supervised predictions of ultralowκ_(L),thereby circumventing large-scale brute-force ab initio calculations without clear objectives.As a result,we provide a list of candidates with ultralowκ_(L)for potential thermoelectric applications and discover a new factor that significantly influences structural anharmonicity.This HiBoFL framework offers a novel practical pathway for accelerating the discovery of functional materials. 展开更多
关键词 ultralow lattice thermal conductivity structure property relationships identify semiconductors data driven machine learning chemical space property labels materials data SEMICONDUCTORS
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Interpretable X-ray diffraction spectra analysis using confidence evaluated deep learning enhanced by template element replacement
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作者 Rongchang Xing Haodong Yao +7 位作者 Zuoxin Xi Minghui Sun Qingmeng Li Jinglong Tian Hairui Wang DeTing Xu Zhaohai Ma Lina Zhao 《npj Computational Materials》 2025年第1期3028-3039,共12页
X-ray Diffraction analysis is crucial for understanding material structures but is hindered by complex patterns and the need for expert interpretation.Deep learning offers automation in phase identification but faces ... X-ray Diffraction analysis is crucial for understanding material structures but is hindered by complex patterns and the need for expert interpretation.Deep learning offers automation in phase identification but faces challenges such as data scarcity,overconfidence in predictions and lack of interpretability.This study addresses these by employing Template Element Replacement to generate a perovskite chemical space containing physically unstable virtual structures,enhancing model understanding of XRD-crystal structure relationships and improving classification accuracy by~5%.A Bayesian-VGGNet model was developed,achieving 84%accuracy on simulated spectra and 75%on external experimental data,while simultaneously estimating prediction uncertainty.Evaluation using Bayesian methods revealed low entropy values,indicating high model confidence.Quantifying the importance of input features to crystal symmetry,aligning significant features of seven crystal systems with physical principles.These approaches enhance the model’s robustness and reliability,making it suitable for practical applications. 展开更多
关键词 perovskite chemical space phase identification interpretable analysis understanding material structures physically unstable virtual structuresenhancing model understanding template element replacement confidence evaluation deep learning
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A machine learning model with minimize feature parameters for multi-type hydrogen evolution catalyst prediction
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作者 Chao Wang Bing Wang +3 位作者 Changhao Wang Aojian Li Zhipeng Chang Ruzhi Wang 《npj Computational Materials》 2025年第1期1218-1230,共13页
The vast chemical compositional space presents challenges in catalyst development using traditional methods.Machine learning(ML)offers new opportunities,but current ML models are typically limited to screening a singl... The vast chemical compositional space presents challenges in catalyst development using traditional methods.Machine learning(ML)offers new opportunities,but current ML models are typically limited to screening a single catalyst type.In this work,we developed an efficient ML model to predict hydrogen evolution reaction(HER)activity across diverse catalysts.By minimizing features,we introduced a key energy-related featureφ=Nd0^(2)=ψ0,which correlates with HER free energy.Using just ten features,the Extremely Randomized Trees model achieved R^(2)=0.922.We predicted 132 new catalysts from the Material Project database,among which several exhibited promising HER performance.The time consumed by theML model for predictions is one 200,000th of that required by traditional density functional theory(DFT)methods.The model provides an efficient approach for discovering high-performance HER catalysts using a small number of key features and offers insights for the development of other catalysts. 展开更多
关键词 hydrogen evolution reaction catalyst prediction feature minimization traditional methodsmachine learning ml offers chemical compositional space machine learning density functional theory minimizing featureswe
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Computational Pharmacology Study of Tougu Xiaotong Granule(透骨消痛颗粒) in Preventing and Treating Knee Osteoarthritis 被引量:17
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作者 郑春松 叶蕻芝 +1 位作者 徐筱杰 刘献祥 《Chinese Journal of Integrative Medicine》 SCIE CAS 2009年第5期371-376,共6页
Objective: To study the pharmacological properties of Tougu Xiaotong Granule (透骨消痛颗粒, TGXTG) in preventing and treating knee osteoarthritis (KOA) at the molecular level. Methods: The computational methods,... Objective: To study the pharmacological properties of Tougu Xiaotong Granule (透骨消痛颗粒, TGXTG) in preventing and treating knee osteoarthritis (KOA) at the molecular level. Methods: The computational methods, including principal component analysis, molecular docking, target-ligand space distribution, and the predictions of absorption, distribution, metabolism, excretion and toxicity (ADMET), were introduced to characterize the molecules in TGXTG. Results: The structural properties of molecules in TGXTG were more diverse than those of the drug/drug-like molecules, and TGXTG could interact with significant target enzymes related to KOA. In addition, the cluster of effective components was preliminarily identified by the target-ligand space distributions. As to the results of ADMET properties, some of them were unsatisfactory, and were merely regarded as references here. Conclusion: Based on this computational pharmacology study, TGXTG is a broad- spectrum recipe inhibiting many important target enzymes, which could effectively postpone the degeneration of cartilage by coordinately inhibiting the biological effects of cytokines, matrix metallopeptidase 3, and oxygen free radicals. 展开更多
关键词 Tougu Xiaotong Granule OSTEOARTHRITIS chemical space virtual screening computational pharmacology
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Potential Synergistic and Multitarget Effect of Herbal Pair Chuanxiong Rhizome-Paeonia Albifora Pall on Osteoarthritis Disease:A Computational Pharmacology Approach 被引量:6
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作者 叶蕻芝 郑春松 +2 位作者 徐筱杰 吴明霞 刘献祥 《Chinese Journal of Integrative Medicine》 SCIE CAS 2011年第9期698-703,共6页
Objective:To study the polypharmacological mechanism of herbal pair Chuanxiong Rhizome-Paeonia Albifora Pall(HP CXR-PAP) on the treatment for osteoarthritis(OA).Methods:Chemical space was used to discuss the sim... Objective:To study the polypharmacological mechanism of herbal pair Chuanxiong Rhizome-Paeonia Albifora Pall(HP CXR-PAP) on the treatment for osteoarthritis(OA).Methods:Chemical space was used to discuss the similarities and differences between the molecule sets of HP CXR-PAP and drugs.Docking protocol was used to study the interaction between HP CXR-PAP and OA target enzymes.The similarities and differences of HP CXR-PAP and drugs in target spaces were elucidated by network features.Results:The plots between the molecule sets of HP CXR-PAP and drugs in chemical space had the majority in the same region, and compounds from HP CXR-PAP covered a much larger additional region of space than drug molecules, which denoted the diverse structural properties in the molecule set of HP CXR-PAP.The molecules in HP CXR-PAP had the properties of promiscuous drugs and combination drug,and both HP CXR-PAP ligand-target interaction network and drug ligand-target interaction network were similar in the interaction profiles and network features,which revealed the effects of multicomponent and multitarget.Conclusion:The clue of potential synergism was obtained in curing OA disease by Chinese medicine,which revealed the advantages of Chinese medicine for targeting osteoarthritis disease. 展开更多
关键词 herbal pair Chuanxiong Rhizome-Paeonia Albifora Pall chemical space virtual screening target space computational pharmacology OSTEOARTHRITIS
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Phase-pure two-dimensional Fe_(X)GeTe_(2) magnets with near-room-temperature Tc
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作者 Govindan Kutty Rajendran Nair Zhaowei Zhang +16 位作者 Fuchen Hou§ Ali Abdelaziem Xiaodong Xu Steve Wu Qing Yang Nan Zhang Weiqi Li Chao Zhu Yao Wu Heng Weiling Lixing Kang Teddy Salim Jiadong Zhou Lin Ke Junhao Lin Xingji Li Weibo Gao Zheng Liu 《Nano Research》 SCIE EI CSCD 2022年第1期457-464,共8页
Two-dimensional(2D)ferromagnets with out-of-plane(OOP)magnetic anisotropy are potential candidates for realizing the next-generation memory devices with ultra-low power consumption and high storage density.However,a s... Two-dimensional(2D)ferromagnets with out-of-plane(OOP)magnetic anisotropy are potential candidates for realizing the next-generation memory devices with ultra-low power consumption and high storage density.However,a scalable approach to synthesize 2D magnets with OOP anisotropy directly on the complimentary metal-oxide semiconductor(CMOS)compatible substrates has not yet been mainly explored,which hinders the practical application of 2D magnets.This work demonstrates a cascaded space confined chemical vapor deposition(CS-CVD)technique to synthesize 2D FexGeTe_(2) ferromagnets.The weight fraction of iron(Fe)in the precursor controls the phase purity of the as-grown FexGeTe2.As a result,high-quality Fe_(3)GeTe_(2) and Fe_(5)GeTe_(2) flakes have been grown selectively using the CS-CVD technique.Curie temperature(Tc)of the as-grown FexGeTe2 can be up to-280 K,nearly room temperature.The thickness and temperature-dependent magnetic studies on the Fe_(5)GeTe_(2) reveal a 2D Ising to 3D XY behavior.Also,Terahertz spectroscopy experiments on Fe_(5)GeTe_(2) display the highest conductivity among other FexGeTe_(2) 2D magnets.The results of this work indicate a scalable pathway for the direct growth and integration of 2D ternary magnets on CMOS-based substrates to develop spintronic memory devices. 展开更多
关键词 cascaded space confined chemical vapor deposition(CVD) van der Waals(vdW) FERROMAGNETISM out of plane anisotropy iron germanium telluride terahertz
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