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石榴低温响应因子CBF基因家族鉴定及其表达分析 被引量:9
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作者 刘龙博 郑树轩 郑洁 《西北农业学报》 CAS CSCD 北大核心 2022年第9期1154-1167,共14页
CBF(C-repeat binding factor)是AP2家族的一类转录激活因子,在植物响应低温胁迫和提高植物耐寒性方面具有重要作用。虽然多个石榴品种的基因组已经发布,但仍缺乏对其CBF基因家族的全面研究。为全面分析石榴(Punica granatum L.)CBF基... CBF(C-repeat binding factor)是AP2家族的一类转录激活因子,在植物响应低温胁迫和提高植物耐寒性方面具有重要作用。虽然多个石榴品种的基因组已经发布,但仍缺乏对其CBF基因家族的全面研究。为全面分析石榴(Punica granatum L.)CBF基因家族分子生物学特性,本文对鉴定到的PgCBFs成员进行了生物信息和表达分析。结果表明,石榴全基因组中有7个CBF基因家族成员,蛋白序列中除包含AP2结构域外,还具有CBF特征序列PKKPAGRxKFxETRHP和DSAWR;7个成员集中分布在染色体1和4上,编码蛋白质氨基酸长度为201~267aa,分子质量为21.69~29.81ku;进化分析显示PgCBFs基因家族成员分布在GroupⅡ~Ⅳ亚组中,与水稻CBF成员组成的GroupⅠ存在明显区分;除PgCBF2、PgCBF4、PgCBF5基因结构中含有1~2个内含子外,其余与其他物种类似,属内含子缺失型;编码的蛋白序列均含有保守基序Motif1~7;蛋白二级结构主要为不规则卷曲和α-螺旋,三级结构较为相似。PgCBFs基因家族扩增主要来源于串联重复,并与拟南芥、苹果、桃分别存在2对、5对和4对共线性关系;GO注释显示PgCBFs多与转录调控、低温胁迫或激素诱导相关;启动子区含有多种顺势作用元件,主要为胁迫刺激、激素诱导和光响应元件;基因表达分析发现除PgCBF6外,其余成员在根中高度表达,在低温胁迫处理下PgCBF在根和韧皮部表达量显著上调,其中PgCBF7能够快速响应并持续应答低温诱导。结合进化树、共线性、启动子以及表达分析,推测PgCBF7可能与石榴幼苗低温胁迫调控相关。本研究可为深入研究石榴CBF基因家族生物学功能提供理论基础。 展开更多
关键词 石榴(Punica granatum L.) CBF(c-repeat binding factor)基因家族 生物信息学 基因表达分析 低温胁迫 PgCBF7
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Molecular Mechanism Underlying Plant Response to Cold Stress 被引量:1
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作者 Yiwei Cao Delight Hwarari +2 位作者 Yasmina Radani Yuanlin Guan Liming Yang 《Phyton-International Journal of Experimental Botany》 SCIE 2023年第9期2665-2682,共18页
Low temperature stress is one of the most important factors limiting plant growth and geographical distribution.In order to adapt to low temperature,plants have evolved strategies to acquire cold tolerance,known as,co... Low temperature stress is one of the most important factors limiting plant growth and geographical distribution.In order to adapt to low temperature,plants have evolved strategies to acquire cold tolerance,known as,cold acclimation.Current molecular and genomic studies have reported that annual herbaceous and perennial woody plants share similar cold acclimation mechanisms.However,woody perennials also require extra resilience to survive cold winters.Thus,trees have acquired complex dynamic processes to control the development of dormancy and cold resistance,ensuring successful tolerance during the coldest winter season.In this review,we systemically described how woody plants perceive and transduce cold stress signals through a series of physiological changes such as calcium signaling,membrane lipid,and antioxidant changes altering downstream gene expression and epigenetic modification,ultimately bud dormancy.We extended the discussion and reviewed the processes endogenous phytohormones play in regulating the cold stress.We believe that this review will aid in the comprehension of underlying mechanisms in plant acclimation to cold stress. 展开更多
关键词 Calcium signaling cold stress c-repeat binding factor(CBF) DORMANCY plants
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Isolation and Characterization of a C-repeat Binding Transcription Factor from Maize 被引量:6
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作者 Lei Wang Yanzhong Luo Lan Zhang Jun Zhao Zhiqiu Hu Yunliu Fan Chunyi Zhang 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2008年第8期965-974,共10页
C-repeat binding proteins (CBFs) are a group of transcription factors that have been proven to be important for stress tolerance in plants. Many of these transcription factors transactivate the promoters of cold-reg... C-repeat binding proteins (CBFs) are a group of transcription factors that have been proven to be important for stress tolerance in plants. Many of these transcription factors transactivate the promoters of cold-regulated genes via binding to low temperature-or dehydration-responsive c/s-elements, thus conferring plants cold acclimation. In the present study, we isolated a C-repeat binding transcription factor from maize using the yeast one-hybrid system with the C-repeat motif from the promoter of the Arabidopsis COR15a gene as bait. The isolated transcription factor is highly similar to the Arabidopsis CBF3 in their predicted amino acid sequences, and is therefore designated ZmCBF3. Point mutation analyses of the ZmCBF3-binding c/s-element revealed (A/G)(C/T)CGAC as the core binding sequence. Expression analyses showed that ZmCBF3 was upregulated by both abscisic acid and low temperature, and was actively expressed during embryogenesis, suggesting that ZmCBF3 plays a role in stress response in maize. 展开更多
关键词 c-repeat DNA-BINDING transcription factor Zea mays ZmCBF3
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Insights into the regulation of C-repeat binding factors in plant cold signaling 被引量:50
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作者 Jingyan Liu Yiting Shi Shuhua Yang 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2018年第9期780-795,共16页
Cold temperatures, a major abiotic stress, threaten the growth and development of plants, worldwide. To cope with this adverse environmental cue, plants from temperate climates have evolved an array of sophisticated m... Cold temperatures, a major abiotic stress, threaten the growth and development of plants, worldwide. To cope with this adverse environmental cue, plants from temperate climates have evolved an array of sophisticated mechanisms to acclimate to cold periods, increasing their ability to tolerate freezing stress. Over the last decade, significant progress has been made in determining the molecular mechanisms underpinning cold acclimation, including following the identification of several pivotal components, including candidates for cold sensors, protein kinases, and transcription factors. With these developments, we have a better understanding of the CBF-dependent cold-signaling pathway. In this review, we summarize recent progress made in elucidating the cold-signaling pathways, especially the C-repeat binding factor-dependent pathway, and describe the regulatory function of the crucial components of plant cold signaling. We also discuss the unsolved questions that should be the focus of future work. 展开更多
关键词 Insights into the regulation of c-repeat binding factors in plant cold signaling ICE FLC
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Isolation and Expression Analysis of Two Cold-Inducible Genes Encoding Putative CBF Transcription Factors from Chinese Cabbage (Brassica pekinensis Rupr) 被引量:3
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作者 Yong Zhang Tong-Wen Yang +4 位作者 Li-Jing Zhang Teng-Guo Zhang Cui-Xia Di Shi-Jian Xu Li-Zhe An 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2006年第7期848-856,共9页
Two homologous genes of the Arabidopsis C-repeat/dehydration-responsive element binding factors (CBF/ DREB1) transcriptional activator were isolated by RT-PCR from Chinese cabbage (Brassica pekinensis Rupr. cv. Qin... Two homologous genes of the Arabidopsis C-repeat/dehydration-responsive element binding factors (CBF/ DREB1) transcriptional activator were isolated by RT-PCR from Chinese cabbage (Brassica pekinensis Rupr. cv. Qinbai 5) and were designated as BcCBF1 and BcCBF2. Each encodes a putative CBF/DREB1 protein with an AP2 (Apetal2) DNA-bindlng domain, a putative nuclear localization signal, and a possible acidic activation domain. Deduced amino acid sequences show that BcCBF1 is very similar to the Arabidopsis CBF1, whereas BcCBF2 Is different in that it contains two extra regions of 24 and 20 amino acids in the acidic domain. The mRNA accumulation profiles indicated that the expression of BcCBF1 and BcCBF2 is strongly induced by cold treatment, but does not respond similarly to dehydration or abscisic acid (ABA) treatment. However, the cold-induced accumulation of BcCBF2 mRNA was rapid but short-lived compared with that of BcCBFI. The mRNA levels of both BcCBF1 and BcCBF2 were higher in leaves than in roots when plants were exposed to cold, whereas, salt stress caused higher accumulation of BcCBF2 mRNA in roots than in leaves, suggesting that the organ specificity of the gene expression of the BcCBFs is probably stress dependent. In addition, the accumulation of BcCBF1 and BcCBF2 mRNAs was greatly enhanced by light compared with darkness when seedlings were exposed to cold. It is concluded that the two BcCBF proteins may be involved in the process of plant response to cold stress through an ABA-independent pathway and that there is also a cross-talk between the light signaling conduction pathway and the cold response pathway in B. pekinensis as in Arabidopsis. 展开更多
关键词 Brassica pekinensis cold acclimation cold induced gene c-repeat/dehydration-responsive element binding factors (CBF/DREB1) expression pattern.
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Identification, occurrence, and validation of DRE and ABRE Cis-regulatory motifs in the promoter regions of genes of Arabidopsis thaliana 被引量:5
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作者 Sonal Mishra Aparna Shukla +9 位作者 Swati Upadhyay Sanchita Pooja Sharma Seema Singh Ujjal J.Phukan Abha Meena Feroz Khan Vineeta Tripathi Rakesh Kumar Shukla Ashok Shrama 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2014年第4期388-399,共12页
Plants posses a complex co-regulatory network which helps them to elicit a response under diverse adverse conditions. We used an in silico approach to identify the genes with both DRE and ABRE motifs in their promoter... Plants posses a complex co-regulatory network which helps them to elicit a response under diverse adverse conditions. We used an in silico approach to identify the genes with both DRE and ABRE motifs in their promoter regions in Arabidopsis thaliana. Our results showed that Arabidopsis contains a set of 2,052 genes with ABRE and DRE motifs in their promoter regions. Approximately 72~o or more of the total predicted 2,052 genes had a gap distance of less than 40o bp between DRE and ABRE motifs. For positional orientation of the DRE and ABRE motifs, we found that the DR form (one in direct and the other one in reverse orientation) was more prevalent than other forms. These predicted 2,o52 genes include 155 transcription factors. Using microarray data from The Arabidopsis Information Resource (TAIR) database, we present 44 transcription factors out of 155 which are upregulated by more than twofold in response to osmotic stress and ABA treatment. Fifty-one transcripts from the one predicted above were validated using semiquantitative expression analysis to support the microarray data in TAIR. Taken together, we report a set of genes containing both DRE and ABRE motifs in their promoter regions in A. thaliana, which can be useful to understand the role of ABA under osmotic stress condition. 展开更多
关键词 Abscisic acid abscisic acid-responsive elements dehydration-responsive element osmotic stress response
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