[Objective] This study aimed to provide a basis for enriching the Punica granatum L. germplasm resources through investigating Punica granatum L. vari- eties in Binchuan. [Method] In this study, biological traits of P...[Objective] This study aimed to provide a basis for enriching the Punica granatum L. germplasm resources through investigating Punica granatum L. vari- eties in Binchuan. [Method] In this study, biological traits of Punica granatum L. vari- eties in Binchuan （including two local varieties-＇Binchuan Red Coat＇ and ＇Binchuan Green Coat＇, ＇Cyan Coat and Soft Seeds＇ and ＇Little Red Coat＇ introduced from Huili, Sichuan, ＇Acid Pomegranate＇ introduced from Shandong Province and ＂Ma Pomegranate＂ from Fengqiu, Henan） were investigated and their major fruit qualities were also analyzed. [Result] ＂Cyan Coat and Soft Seeds＇ and ＂Ma Pomegranate＇ grew well with good fruit quality, which adapted well to the climate and environment in Binchuan; ＂Little Red Coat＇ showed average performance in growth and major fruit qualities with inferior flavour; ＂Binchuan Red Coat＇ and ＇Binchuan Green Coat＇ also showed average performance in major fruit qualities and and inferior flavour; ＇Acid Pomegranate＇ grew while was inferior in flavour. [Conclusion] This study pro- vides references for presenting the directions for studies of P. granatum L. germplasm resources and determining the genetic relationship among germplasm resources, as well as breeding, introduction and cultivation of P. granatum L., further providing a variety basis for pomegranate production.展开更多
BACKGROUND Proteomic signatures of Ming's infiltrative gastric cancer(IGC)remain unknown.AIM To elucidate the molecular characteristics of IGC at the proteomics level.METHODS Twelve pairs of IGC and adjacent norma...BACKGROUND Proteomic signatures of Ming's infiltrative gastric cancer(IGC)remain unknown.AIM To elucidate the molecular characteristics of IGC at the proteomics level.METHODS Twelve pairs of IGC and adjacent normal tissues were collected and their proteomes were analyzed by high performance liquid chromatography tandem mass spectrometry.The identified peptides were sequenced de novo and matched against the SwissProt database using Maxquant software.The differentially expressed proteins(DEPs)were screened using|log2(Fold change)|>1 and P-adj<0.01 as the thresholds.The expression levels of selected proteins were verified by Western blotting.The interaction network of the DEPs was constructed with the STRING database and visualized using Cytoscape with cytoHubba software.The DEPs were functionally annotated using clusterProfiler,STRING and DAVID for Gene Ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)pathways.P<0.05 was considered statistically significant.RESULTS A total of 7361 DEPs were identified,of which 94 were significantly up-regulated and 223 were significantly down-regulated in IGC relative to normal gastric tissues.The top 10 up-regulated proteins were MRTO4,BOP1,PES1,WDR12,BRIX1,NOP2,POLR1C,NOC2L,MYBBP1A and TSR1,and the top 10 down-regulated proteins were NDUFS8,NDUFS6,NDUFA8,NDUFA5,NDUFC2,NDUFB8,NDUFB5,NDUFB9,UQCRC2 and UQCRC1.The up-regulated proteins were enriched for 9 biological processes including DNA replication,ribosome biogenesis and initiation of DNA replication,and the cellular component MCM complex.Among the down-regulated proteins,17 biological processes were enriched,including glucose metabolism,pyruvic acid metabolism and fatty acidβ-oxidation.In addition,the mitochondrial inner membrane,mitochondrial matrix and mitochondrial proton transport ATP synthase complex were among the 6 enriched cellular components,and 11 molecular functions including reduced nicotinamide adenine dinucleotide dehydrogenase activity,acyl-CoA dehydrogenase activity and nicotinamide adenine dinucleotide binding were also enriched.The significant KEGG pathways for the up-regulated proteins were DNA replication,cell cycle and mismatch repair,whereas 18 pathways including oxidative phosphorylation,fatty acid degradation and phenylalanine metabolism were significantly enriched among the down-regulated proteins.CONCLUSION The proteins involved in cell cycle regulation,DNA replication and mismatch repair,and metabolism were significantly altered in IGC,and the proteomic profile may enable the discovery of novel biomarkers.展开更多
基金Supported by the Special Fund for Scientific Research of Department of Education of Yunnan Province(2011Y445)~~
文摘[Objective] This study aimed to provide a basis for enriching the Punica granatum L. germplasm resources through investigating Punica granatum L. vari- eties in Binchuan. [Method] In this study, biological traits of Punica granatum L. vari- eties in Binchuan （including two local varieties-＇Binchuan Red Coat＇ and ＇Binchuan Green Coat＇, ＇Cyan Coat and Soft Seeds＇ and ＇Little Red Coat＇ introduced from Huili, Sichuan, ＇Acid Pomegranate＇ introduced from Shandong Province and ＂Ma Pomegranate＂ from Fengqiu, Henan） were investigated and their major fruit qualities were also analyzed. [Result] ＂Cyan Coat and Soft Seeds＇ and ＂Ma Pomegranate＇ grew well with good fruit quality, which adapted well to the climate and environment in Binchuan; ＂Little Red Coat＇ showed average performance in growth and major fruit qualities with inferior flavour; ＂Binchuan Red Coat＇ and ＇Binchuan Green Coat＇ also showed average performance in major fruit qualities and and inferior flavour; ＇Acid Pomegranate＇ grew while was inferior in flavour. [Conclusion] This study pro- vides references for presenting the directions for studies of P. granatum L. germplasm resources and determining the genetic relationship among germplasm resources, as well as breeding, introduction and cultivation of P. granatum L., further providing a variety basis for pomegranate production.
基金Supported by National Natural Science Foundation of China,No.81871979Natural Science Foundation of Fujian Province,No.2021J02056,No.2021J05276 and No.2020CXB048Medical and Health Sciences Foundation of Xiamen,No.3502Z20199171 and No.3502Z20204002.
文摘BACKGROUND Proteomic signatures of Ming's infiltrative gastric cancer(IGC)remain unknown.AIM To elucidate the molecular characteristics of IGC at the proteomics level.METHODS Twelve pairs of IGC and adjacent normal tissues were collected and their proteomes were analyzed by high performance liquid chromatography tandem mass spectrometry.The identified peptides were sequenced de novo and matched against the SwissProt database using Maxquant software.The differentially expressed proteins(DEPs)were screened using|log2(Fold change)|>1 and P-adj<0.01 as the thresholds.The expression levels of selected proteins were verified by Western blotting.The interaction network of the DEPs was constructed with the STRING database and visualized using Cytoscape with cytoHubba software.The DEPs were functionally annotated using clusterProfiler,STRING and DAVID for Gene Ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)pathways.P<0.05 was considered statistically significant.RESULTS A total of 7361 DEPs were identified,of which 94 were significantly up-regulated and 223 were significantly down-regulated in IGC relative to normal gastric tissues.The top 10 up-regulated proteins were MRTO4,BOP1,PES1,WDR12,BRIX1,NOP2,POLR1C,NOC2L,MYBBP1A and TSR1,and the top 10 down-regulated proteins were NDUFS8,NDUFS6,NDUFA8,NDUFA5,NDUFC2,NDUFB8,NDUFB5,NDUFB9,UQCRC2 and UQCRC1.The up-regulated proteins were enriched for 9 biological processes including DNA replication,ribosome biogenesis and initiation of DNA replication,and the cellular component MCM complex.Among the down-regulated proteins,17 biological processes were enriched,including glucose metabolism,pyruvic acid metabolism and fatty acidβ-oxidation.In addition,the mitochondrial inner membrane,mitochondrial matrix and mitochondrial proton transport ATP synthase complex were among the 6 enriched cellular components,and 11 molecular functions including reduced nicotinamide adenine dinucleotide dehydrogenase activity,acyl-CoA dehydrogenase activity and nicotinamide adenine dinucleotide binding were also enriched.The significant KEGG pathways for the up-regulated proteins were DNA replication,cell cycle and mismatch repair,whereas 18 pathways including oxidative phosphorylation,fatty acid degradation and phenylalanine metabolism were significantly enriched among the down-regulated proteins.CONCLUSION The proteins involved in cell cycle regulation,DNA replication and mismatch repair,and metabolism were significantly altered in IGC,and the proteomic profile may enable the discovery of novel biomarkers.
